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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012089 ID=TCONS_00012089|Name=TCONS_00012089|organism=Clytia hemisphaerica|type=transcript|length=2539bpRun BLAST on NCBI protein sequence of TCONS_00012089-protein >TCONS_00012089-protein ID=TCONS_00012089-protein|Name=TCONS_00012089-protein|organism=Clytia hemisphaerica|type=polypeptide|length=609bp QEFHEKITAKADLIQATGDAIVTFEEVACLTPRGRYAIRVYPTFLQLHGKRun BLAST on NCBI transcript from alignment at sc0000137:122329..134183+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012089 ID=TCONS_00012089|Name=TCONS_00012089|organism=Clytia hemisphaerica|type=transcript|length=11855bp|location=Sequence derived from alignment at sc0000137:122329..134183+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000137:122329..134183+ >TCONS_00012089 ID=TCONS_00012089|Name=TCONS_00012089|organism=Clytia hemisphaerica|type=CDS|length=20130bp|location=Sequence derived from alignment at sc0000137:122329..134183+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012089 vs. Swiss-Prot (Human)
Match: SSRP1 (FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP1 PE=1 SV=1) HSP 1 Score: 360.533 bits (924), Expect = 1.783e-111 Identity = 174/292 (59.59%), Postives = 230/292 (78.77%), Query Frame = 3
Query: 9 FHEKITAKADLIQATGDAIVTFEEVACLTPRGRYAIRVYPTFLQLHGKTYDYKIPHTTVLRLFLLPHQDNRFMFFVISMDPPIRQGQTRYPFLILQFERDEEMTCKLNLSEDEIENKYNNKITQDLSGPIFEVVSKVLNTICQRKITVPAQNFKSGANSCSITCSYKASNGLLYPLERGFIFVHKPAVHIRFDEIANVNFARGSTTGRTFDFEVELKNQGAAGTNNVVTFSSLPREEYSQLYEFVNKKQLRIXXXXXXXXXXXXXHLDAMMESDDEEHDAYLQKVKAEGRER 884
F + + +KAD+IQATGDAI F E+ CLTPRGRY IR+YPTFL LHGKT+DYKIP+TTVLRLFLLPH+D R MFFVIS+DPPI+QGQTRY FLIL F +DE+++ LN++E+E+E ++ ++T+++SG ++E+VS+V+ + RKITVP NF+ + + ITCSYKAS+GLLYPLERGFI+VHKP VHIRFDEI+ VNFARG+TT R+FDFE+E K QG TFSS+ REEY +L++FVN K+L IKN+G K+ D +SD+++HDAYL+++K EG+ R
Sbjct: 181 FAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPG-NFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETK-QGTQ-----YTFSSIEREEYGKLFDFVNAKKLNIKNRGLKEGMNPS--YDEYADSDEDQHDAYLERMKEEGKIR 463 The following BLAST results are available for this feature:
BLAST of TCONS_00012089 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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