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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012083 ID=TCONS_00012083|Name=TCONS_00012083|organism=Clytia hemisphaerica|type=transcript|length=1344bp
ATGCAAAACGACGGTAAGCTTTGAAGATTTTAATTTCTACAAAATCTGTT
TTTCTTCCGGACAAACTGTATATACCATAGATCTTTCCTACTTATTACAG
TCGGTTGATAATGCTATCAAAGATCGATTCTATCAAGTTATCACTCCACT
CATCAAGGCGTCTAAAAGCACCTTTGATAGAACGGTAAATCTTGTAAACC
ATCGGCGGTTTATAAAGCCCGGTAATCTCCAAAGCTCTGATCATACACTC
ATTCATTGCTTCTGACGTTGCACCATATTTATCCATCTCCTTCAAATATA
TTTCAAGCTCTTCTTTAATCTCTGGAAGATGTTCTTCTATAGCATCTCTT
GTTTTACGAGTAGTTTCGAcgaaatctaatgaaaatcggGCTTCAATTTT
ACAAATAGCACTTTCTTTAAAGCACTCTAACAACACTTTCAAACCGTCCT
CCGTTTTGAAATAATCACTAAAGACATCACCCATAACATCAAGATATGTT
TGGCTAAATCCACGTAGCAAATTCATCTTTTCGGTGAAAAGACACGGCAT
ATGGCCAGCTTTCAGGAAATCCGATAACCGTTGAAACAGGTTCTCGACAA
CTTCAAAATAGTTGCTTTCTTCTTCCCATATTTGCCAGATACTTTCAGGA
GTTTCCTCAATCAAACTGTTCATAATTGTCTTAATGAGATAAGAGGATAA
CTTTCGGTCGTTATTCTGGTCTGCAAAATGTTGTGTTTGAACTGTGAAAA
TCAATTTCGCCAATAGGAAACATTTCTTTTGAAACACACTTCGTTCCCTA
GCTAATATAATCTCAGCTTGAGAGAAAGAGAGTCGCCATGAGGCTTTCTC
GTCATCTGCAGATTTCCATACAAGGTGACAACCTTCTTGGTGGATCTGAG
CCATGACCTCTGGCTTAGGCCAATATCTGTTTTTGTTGAACCACGGTGTG
ACAAAGTCTGGCCAAAACTCAAGATGCAGACAAGGTACATTGTCATAATT
CGTGtttgaaaatatagaaaaaacaGATCCTACAATGGATTCGGGACCTg
ttaaatttttgttgatttttctttcCACAGATGGTCTACCTGCTTGAATA
TCTTCTTCGAAAAAATCCTCATACAGGTCGCCGTATTGTACGTGCTGTTG
AGGTTTAGTGGCTTCGGCAGTTCTTAAAATCTCCATTATTTCAGAACGTT
GTTCTTCTACAATATTCTTTAACAATTCTTCTGTTGCATGTATATCATAa
tctcgggtaaattaatgcgtgtccaaattttcgttaattcttcggaccca
tcatcacccctcctagcataataaattatacctttaaagaagcg Run BLAST on NCBI protein sequence of TCONS_00012083-protein >TCONS_00012083-protein ID=TCONS_00012083-protein|Name=TCONS_00012083-protein|organism=Clytia hemisphaerica|type=polypeptide|length=363bp
MEILRTAEATKPQQHVQYGDLYEDFFEEDIQAGRPSVERKINKNLTGPES
IVGSVFSIFSNTNYDNVPCLHLEFWPDFVTPWFNKNRYWPKPEVMAQIHQ
EGCHLVWKSADDEKASWRLSFSQAEIILARERSVFQKKCFLLAKLIFTVQ
TQHFADQNNDRKLSSYLIKTIMNSLIEETPESIWQIWEEESNYFEVVENL
FQRLSDFLKAGHMPCLFTEKMNLLRGFSQTYLDVMGDVFSDYFKTEDGLK
VLLECFKESAICKIEARFSLDFVETTRKTRDAIEEHLPEIKEELEIYLKE
MDKYGATSEAMNECMIRALEITGLYKPPMVYKIYRSIKGAFRRLDEWSDN
LIESIFDSIINRL Run BLAST on NCBI transcript from alignment at sc0000136:434096..435439 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012083 ID=TCONS_00012083|Name=TCONS_00012083|organism=Clytia hemisphaerica|type=transcript|length=1344bp|location=Sequence derived from alignment at sc0000136:434096..435439 (Clytia hemisphaerica)
cgcttctttaaaggtataatttattatgctaggaggggtgatgatgggtc
cgaagaattaacgaaaatttggacacgcattaatttacccgagatTATGA
TATACATGCAACAGAAGAATTGTTAAAGAATATTGTAGAAGAACAACGTT
CTGAAATAATGGAGATTTTAAGAACTGCCGAAGCCACTAAACCTCAACAG
CACGTACAATACGGCGACCTGTATGAGGATTTTTTCGAAGAAGATATTCA
AGCAGGTAGACCATCTGTGgaaagaaaaatcaacaaaaatttaacAGGTC
CCGAATCCATTGTAGGATCtgttttttctatattttcaaaCACGAATTAT
GACAATGTACCTTGTCTGCATCTTGAGTTTTGGCCAGACTTTGTCACACC
GTGGTTCAACAAAAACAGATATTGGCCTAAGCCAGAGGTCATGGCTCAGA
TCCACCAAGAAGGTTGTCACCTTGTATGGAAATCTGCAGATGACGAGAAA
GCCTCATGGCGACTCTCTTTCTCTCAAGCTGAGATTATATTAGCTAGGGA
ACGAAGTGTGTTTCAAAAGAAATGTTTCCTATTGGCGAAATTGATTTTCA
CAGTTCAAACACAACATTTTGCAGACCAGAATAACGACCGAAAGTTATCC
TCTTATCTCATTAAGACAATTATGAACAGTTTGATTGAGGAAACTCCTGA
AAGTATCTGGCAAATATGGGAAGAAGAAAGCAACTATTTTGAAGTTGTCG
AGAACCTGTTTCAACGGTTATCGGATTTCCTGAAAGCTGGCCATATGCCG
TGTCTTTTCACCGAAAAGATGAATTTGCTACGTGGATTTAGCCAAACATA
TCTTGATGTTATGGGTGATGTCTTTAGTGATTATTTCAAAACGGAGGACG
GTTTGAAAGTGTTGTTAGAGTGCTTTAAAGAAAGTGCTATTTGTAAAATT
GAAGCccgattttcattagatttcgTCGAAACTACTCGTAAAACAAGAGA
TGCTATAGAAGAACATCTTCCAGAGATTAAAGAAGAGCTTGAAATATATT
TGAAGGAGATGGATAAATATGGTGCAACGTCAGAAGCAATGAATGAGTGT
ATGATCAGAGCTTTGGAGATTACCGGGCTTTATAAACCGCCGATGGTTTA
CAAGATTTACCGTTCTATCAAAGGTGCTTTTAGACGCCTTGATGAGTGGA
GTGATAACTTGATAGAATCGATCTTTGATAGCATTATCAACCGACTGTAA
TAAGTAGGAAAGATCTATGGTATATACAGTTTGTCCGGAAGAAAAACAGA
TTTTGTAGAAATTAAAATCTTCAAAGCTTACCGTCGTTTTGCAT Coding sequence (CDS) from alignment at sc0000136:434096..435439 >TCONS_00012083 ID=TCONS_00012083|Name=TCONS_00012083|organism=Clytia hemisphaerica|type=CDS|length=1092bp|location=Sequence derived from alignment at sc0000136:434096..435439 (Clytia hemisphaerica)
ATGGAGATTTTAAGAACTGCCGAAGCCACTAAACCTCAACAGCACGTACA
ATACGGCGACCTGTATGAGGATTTTTTCGAAGAAGATATTCAAGCAGGTA
GACCATCTGTGgaaagaaaaatcaacaaaaatttaacAGGTCCCGAATCC
ATTGTAGGATCtgttttttctatattttcaaaCACGAATTATGACAATGT
ACCTTGTCTGCATCTTGAGTTTTGGCCAGACTTTGTCACACCGTGGTTCA
ACAAAAACAGATATTGGCCTAAGCCAGAGGTCATGGCTCAGATCCACCAA
GAAGGTTGTCACCTTGTATGGAAATCTGCAGATGACGAGAAAGCCTCATG
GCGACTCTCTTTCTCTCAAGCTGAGATTATATTAGCTAGGGAACGAAGTG
TGTTTCAAAAGAAATGTTTCCTATTGGCGAAATTGATTTTCACAGTTCAA
ACACAACATTTTGCAGACCAGAATAACGACCGAAAGTTATCCTCTTATCT
CATTAAGACAATTATGAACAGTTTGATTGAGGAAACTCCTGAAAGTATCT
GGCAAATATGGGAAGAAGAAAGCAACTATTTTGAAGTTGTCGAGAACCTG
TTTCAACGGTTATCGGATTTCCTGAAAGCTGGCCATATGCCGTGTCTTTT
CACCGAAAAGATGAATTTGCTACGTGGATTTAGCCAAACATATCTTGATG
TTATGGGTGATGTCTTTAGTGATTATTTCAAAACGGAGGACGGTTTGAAA
GTGTTGTTAGAGTGCTTTAAAGAAAGTGCTATTTGTAAAATTGAAGCccg
attttcattagatttcgTCGAAACTACTCGTAAAACAAGAGATGCTATAG
AAGAACATCTTCCAGAGATTAAAGAAGAGCTTGAAATATATTTGAAGGAG
ATGGATAAATATGGTGCAACGTCAGAAGCAATGAATGAGTGTATGATCAG
AGCTTTGGAGATTACCGGGCTTTATAAACCGCCGATGGTTTACAAGATTT
ACCGTTCTATCAAAGGTGCTTTTAGACGCCTTGATGAGTGGAGTGATAAC
TTGATAGAATCGATCTTTGATAGCATTATCAACCGACTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012083-exon-sc0000136-1491911889:434096..435439 | TCONS_00012083-exon-sc0000136-1491911889:434096..435439 | Clytia hemisphaerica | exon |
| TCONS_00012083-exon-sc0000136-1510915933:434096..435439 | TCONS_00012083-exon-sc0000136-1510915933:434096..435439 | Clytia hemisphaerica | exon |
| TCONS_00012083-exon-sc0000136-1575043694:434096..435439 | TCONS_00012083-exon-sc0000136-1575043694:434096..435439 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000136 | supercontig | sc0000136:434096..435439 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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