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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012080 ID=TCONS_00012080|Name=TCONS_00012080|organism=Clytia hemisphaerica|type=transcript|length=1349bp
aaaatttgatcaagTTTTACAATTACTTTGAATACATTTATTAACCAAAG
TACGGAACATTTGTTCTGTACATTCCAATTTCCTCAAATCAATCTCAAAA
TTCTCTTCTTGAAGAACGACTAAATCTTCGTTCCGCAAATTATACGGTTC
GTTCgtttcatttttcaagcttGCCACAATGACCGGTGCGTTATTTTGAG
GCCGGGAACGCTTGATATCAGACGAGACTTCAATCAAAGAGATGAAAGAC
TCGCGTTTTGATTTACGGTAGGCTAGTATAAAACCGTCAGACGAGAGCAG
CAAATCTCGGTACGCCCGAACATTTTTCCGACACCATTCGGTGCAAACGA
CTGAAATACGAATATCGTAATGTGATAATCCGACGTTATTGTTGATTGGC
GGTAATATCATTGGCGTGCTAAAACGCCTTTCTCCACTTACGCCTCTAGC
ACAAAAATCATTACTTTTCATGTCCTGTTGCGTGAATGTTCGGCACATAG
TCGTTTTACCGATAGCTTCGTCGCCGATAACGAGAATACTAACGCTACCA
CGATGCATAGCCGTTGTGCTTGACTTCCGACGGGTTTTCGTTAAAACACT
TGCTACTAAATTCGGTGGCTGTAAAACTGTACTTGATTTACGTCGACTCT
TAGGTAAAACAGTAACTGTCTCAGGCGTTGTTTGCATTCCACCTTCATCT
ATTTTGGGCGTAGAGGGCGGACAAAGAGTTTCATCAATCTTTAAATTTCC
TCTACTAAACTTCCTTAATACCTTCATTGTTGTGTTTTGAAGTAAGATAA
GATAAAGGTAGTTTCAGAAACCGCAAACAATTCACCaaaaaatgaaacaa
gaaaCTCGTTCCGTTCCGACTTTCCCAGTTTTCGTTCAAACCAAGTAAAT
TTGATGCAAACACACAAAATGTCGTTTCCAAAATAAGGTTACAAACAGTA
AAATCAACCCAGGGTTGTTGTGAAGTGTTTTTCCAGTCCCGTTCTGTTTA
AAAACCAATCAGATAACTGTACGTAGAGTTTTAAACTCTATGCCGTGACT
AGTTCCTTTTTCCCGACTTCAAATTTGACCATATATCTAATTAATGAAAG
CTGCACGTTGAGTCTTTAACTCTCACGAACAGGTTTATAATATACCGCGA
CTGATTCCTTTTTCCTTGACTTCAAAGTGTGACTAAAGTACCTTCTTTTC
CGATAACCATGTATATTTTAAATCACGTTCACCATTTCCTTTCTCTTGAA
ACAAaaagtgaatcaaaaataaagttGATGAATCACTGACAACTAAATTT
CCAAAGATGGTATGAAAATCAATGAGTATATATCCTGCCTTGAAAACAC Run BLAST on NCBI protein sequence of TCONS_00012080-protein >TCONS_00012080-protein ID=TCONS_00012080-protein|Name=TCONS_00012080-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp
MKVLRKFSRGNLKIDETLCPPSTPKIDEGGMQTTPETVTVLPKSRRKSST
VLQPPNLVASVLTKTRRKSSTTAMHRGSVSILVIGDEAIGKTTMCRTFTQ
QDMKSNDFCARGVSGERRFSTPMILPPINNNVGLSHYDIRISVVCTEWCR
KNVRAYRDLLLSSDGFILAYRKSKRESFISLIEVSSDIKRSRPQNNAPVI
VASLKNETNEPYNLRNEDLVVLQEENFEIDLRKLECTEQMFRTLVNKCIQ
SNCKT Run BLAST on NCBI transcript from alignment at sc0000136:332058..333406 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012080 ID=TCONS_00012080|Name=TCONS_00012080|organism=Clytia hemisphaerica|type=transcript|length=1349bp|location=Sequence derived from alignment at sc0000136:332058..333406 (Clytia hemisphaerica)
GTGTTTTCAAGGCAGGATATATACTCATTGATTTTCATACCATCTTTGGA
AATTTAGTTGTCAGTGATTCATCaactttatttttgattcactttTTGTT
TCAAGAGAAAGGAAATGGTGAACGTGATTTAAAATATACATGGTTATCGG
AAAAGAAGGTACTTTAGTCACACTTTGAAGTCAAGGAAAAAGGAATCAGT
CGCGGTATATTATAAACCTGTTCGTGAGAGTTAAAGACTCAACGTGCAGC
TTTCATTAATTAGATATATGGTCAAATTTGAAGTCGGGAAAAAGGAACTA
GTCACGGCATAGAGTTTAAAACTCTACGTACAGTTATCTGATTGGTTTTT
AAACAGAACGGGACTGGAAAAACACTTCACAACAACCCTGGGTTGATTTT
ACTGTTTGTAACCTTATTTTGGAAACGACATTTTGTGTGTTTGCATCAAA
TTTACTTGGTTTGAACGAAAACTGGGAAAGTCGGAACGGAACGAGtttct
tgtttcattttttGGTGAATTGTTTGCGGTTTCTGAAACTACCTTTATCT
TATCTTACTTCAAAACACAACAATGAAGGTATTAAGGAAGTTTAGTAGAG
GAAATTTAAAGATTGATGAAACTCTTTGTCCGCCCTCTACGCCCAAAATA
GATGAAGGTGGAATGCAAACAACGCCTGAGACAGTTACTGTTTTACCTAA
GAGTCGACGTAAATCAAGTACAGTTTTACAGCCACCGAATTTAGTAGCAA
GTGTTTTAACGAAAACCCGTCGGAAGTCAAGCACAACGGCTATGCATCGT
GGTAGCGTTAGTATTCTCGTTATCGGCGACGAAGCTATCGGTAAAACGAC
TATGTGCCGAACATTCACGCAACAGGACATGAAAAGTAATGATTTTTGTG
CTAGAGGCGTAAGTGGAGAAAGGCGTTTTAGCACGCCAATGATATTACCG
CCAATCAACAATAACGTCGGATTATCACATTACGATATTCGTATTTCAGT
CGTTTGCACCGAATGGTGTCGGAAAAATGTTCGGGCGTACCGAGATTTGC
TGCTCTCGTCTGACGGTTTTATACTAGCCTACCGTAAATCAAAACGCGAG
TCTTTCATCTCTTTGATTGAAGTCTCGTCTGATATCAAGCGTTCCCGGCC
TCAAAATAACGCACCGGTCATTGTGGCaagcttgaaaaatgaaacGAACG
AACCGTATAATTTGCGGAACGAAGATTTAGTCGTTCTTCAAGAAGAGAAT
TTTGAGATTGATTTGAGGAAATTGGAATGTACAGAACAAATGTTCCGTAC
TTTGGTTAATAAATGTATTCAAAGTAATTGTAAAActtgatcaaatttt Coding sequence (CDS) from alignment at sc0000136:332058..333406 >TCONS_00012080 ID=TCONS_00012080|Name=TCONS_00012080|organism=Clytia hemisphaerica|type=CDS|length=768bp|location=Sequence derived from alignment at sc0000136:332058..333406 (Clytia hemisphaerica)
ATGAAGGTATTAAGGAAGTTTAGTAGAGGAAATTTAAAGATTGATGAAAC
TCTTTGTCCGCCCTCTACGCCCAAAATAGATGAAGGTGGAATGCAAACAA
CGCCTGAGACAGTTACTGTTTTACCTAAGAGTCGACGTAAATCAAGTACA
GTTTTACAGCCACCGAATTTAGTAGCAAGTGTTTTAACGAAAACCCGTCG
GAAGTCAAGCACAACGGCTATGCATCGTGGTAGCGTTAGTATTCTCGTTA
TCGGCGACGAAGCTATCGGTAAAACGACTATGTGCCGAACATTCACGCAA
CAGGACATGAAAAGTAATGATTTTTGTGCTAGAGGCGTAAGTGGAGAAAG
GCGTTTTAGCACGCCAATGATATTACCGCCAATCAACAATAACGTCGGAT
TATCACATTACGATATTCGTATTTCAGTCGTTTGCACCGAATGGTGTCGG
AAAAATGTTCGGGCGTACCGAGATTTGCTGCTCTCGTCTGACGGTTTTAT
ACTAGCCTACCGTAAATCAAAACGCGAGTCTTTCATCTCTTTGATTGAAG
TCTCGTCTGATATCAAGCGTTCCCGGCCTCAAAATAACGCACCGGTCATT
GTGGCaagcttgaaaaatgaaacGAACGAACCGTATAATTTGCGGAACGA
AGATTTAGTCGTTCTTCAAGAAGAGAATTTTGAGATTGATTTGAGGAAAT
TGGAATGTACAGAACAAATGTTCCGTACTTTGGTTAATAAATGTATTCAA
AGTAATTGTAAAActtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012080-exon-sc0000136-1491911889:332058..333406 | TCONS_00012080-exon-sc0000136-1491911889:332058..333406 | Clytia hemisphaerica | exon |
| TCONS_00012080-exon-sc0000136-1510915933:332058..333406 | TCONS_00012080-exon-sc0000136-1510915933:332058..333406 | Clytia hemisphaerica | exon |
| TCONS_00012080-exon-sc0000136-1575043694:332058..333406 | TCONS_00012080-exon-sc0000136-1575043694:332058..333406 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000136 | supercontig | sc0000136:332058..333406 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027417 | P-loop_NTPase |
Blast
The following BLAST results are available for this feature:
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