TCONS_00012077 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012077
Unique NameTCONS_00012077
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length320

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012077 ID=TCONS_00012077|Name=TCONS_00012077|organism=Clytia hemisphaerica|type=transcript|length=320bp
CAGTTCTAGacaacaaaacataaaataatcttacaataccattgaaaaaa
tacaaaaattatacTGAAAACATCACCAGGGGATTTCCCCAGAtatgtta
gaaaaaataatataaatacaaaaacatCGTAAAAATGAGGTTAAAAAAAC
TATGTATGCATTTCCATCCAACCCAACAAATAATagtgaaataaaaatta
aatattcttcCACAGTCAACAGTGTATATGTATATTTGAATTACAGATTG
TCATTgttagtttgtatttttttcagtgCATATGACTTCACTATTTCTCT
GAATATAAATCACAGGTGAC
Run BLAST on NCBI

transcript from alignment at sc0000136:282238..282557

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012077 ID=TCONS_00012077|Name=TCONS_00012077|organism=Clytia hemisphaerica|type=transcript|length=320bp|location=Sequence derived from alignment at sc0000136:282238..282557 (Clytia hemisphaerica)
GTCACCTGTGATTTATATTCAGAGAAATAGTGAAGTCATATGcactgaaa
aaaatacaaactaacAATGACAATCTGTAATTCAAATATACATATACACT
GTTGACTGTGgaagaatatttaatttttatttcactATTATTTGTTGGGT
TGGATGGAAATGCATACATAGTTTTTTTAACCTCATTTTTACGatgtttt
tgtatttatattattttttctaacataTCTGGGGAAATCCCCTGGTGATG
TTTTCAgtataatttttgtattttttcaatggtattgtaagattatttta
tgttttgttgtCTAGAACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006788XLOC_006788Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012077-exon-sc0000136-1491911889:282238..282557TCONS_00012077-exon-sc0000136-1491911889:282238..282557Clytia hemisphaericaexon
TCONS_00012077-exon-sc0000136-1510915933:282238..282557TCONS_00012077-exon-sc0000136-1510915933:282238..282557Clytia hemisphaericaexon
TCONS_00012077-exon-sc0000136-1575043694:282238..282557TCONS_00012077-exon-sc0000136-1575043694:282238..282557Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000136supercontigsc0000136:282238..282557 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.83964	2.12193	0.72369	0.484094	0	0.34056	0.410871	0.384652	1.92237	0.736285	1.71543	0.576819	1.60377	1.84523	0.824139	0.418828	0.110613	0.702977	0	0.0694076	4.88339	4.42675	3.81767	4.20052	0	0	5.89121	4.60423	3.89761	4.33527
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012077 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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