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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012035 ID=TCONS_00012035|Name=TCONS_00012035|organism=Clytia hemisphaerica|type=transcript|length=1676bp
CTTTTGCAAaaacttctttttcaatttttgtaaatttcattAGATAGATT
CGATTCGGATTGAAGGTGAGGATCAGTTGAACCAACATGATGCTGAAAGC
ACTTCACAAGTATCAATTGCAACTGTTGGCTTTGCAAAGTTTGGCAGACA
ACGCAGTCAAAAGCCTCTTGATAAACGCATTACAAGTCTGGTTAGGTAAC
caagaaaatggggaaaatcCAAATAAAGATTCGATCAACAAAGTTCTTAG
TAAATTTTTGAGAAGTGAAAAGAACTCCTTGAAGAGAGGCTATTTCTTAG
CTTCGTTTGCAAAATTACAGAGTTTGATTTACGAGGATGTCACATTGCAG
AAGATCAAAGAGGAGATAGATATCTCTAAGCTGGATGTTCTCCTGGTTAT
CGAGATTCTGGAAAACACAGCTCTCGGTCAATTGGAGGTAGTTGCAAATC
TATCAAAAGCTTTGANGGAGATAGATATCTCTAAGCTGGATGTTCTCCTG
GTTATCGAGATTCTGGAAAACACAGCTCTCGGTCAATTGGAGGTAGTTGC
AAAGCTATCAAAAGCTTTGAAAGTGATTTCTAATTATCGTGTATTGGTTG
CCAATGAAAACAGTGAAGCATTCTGGGAGCAATTTGAGGAAAATGAAGAT
GGTGTGCTTTTGAGTTTTGATGCTGGTGGTCCAAAAACATGGTCTACTAT
TTGGAAAGAGAATACAAAGAGTGTTATGGATGTGGtgaaacatttacacc
aaagcaaTATGCTGAATGCTGTTGATTATCATCATCATTTGGAAGAGATA
AGACTCTTTGGAAAGTGGTCTAAACAAGAAATTCTTCAGAATTGGTATCA
CCAGATTGAAAAGCAGATCAAATCTTTATCTTTCTTACACAAGATTGAAA
AGCAAGTTCAGAAATATAAAGAAGTTGAGATTGTATTGAGAATCACAAAT
ATTGGTTTGAAGATTAGGAAAAATGATGAGAGCTTTCTGTCCTCTTTTGT
TGCGTATTTGAAATCATTCTTCTACGAATCAAACACCAGAGTGGAACCAG
ACACAATTGGTCGTATCGAAGATATCGAATTAGATTCTGAATTTGCCGAC
ATGGTTAATATAAAGATGGGCTGCTTGATTAGTGCCTTATTTGGCGACCA
AGGGTTGGTGGAGAATTCCTTGGTCGAAGTTTCGAAAGGGGTTAAAGTCA
CCGAGGCTAAAGACGAGGAAGATCGTTTGTTGCCAATAACATTGACATTT
GAACTTGTCCAAAAACATAACTTCTGTAAATCTAGTTCGACCGAATCTTA
TGAATTGTGGAAAACACTATCCGAAGAGATTACTCAATGCATCAAAGACA
CAATGTCGATTGATGTGGATTTGTTCAGAACAAGCTGGTTGAAGGAGGCT
AATGGTAATAAAGTCACCGTTTTTATCATCAAGTATTCCTTAAAGCCTTG
GTTGCAATCTGAATGTGAAAACCTTATCCAGAATCTCCAAGACTGGACAC
AATTTACAACACCTGTTATCGGTGTGATGAACAACGATCAAATCATGGCA
AACCTAGCTACAATGGTGTACCGAATTTCAACTTATAATCATCACTTCTT
TGATGTGTTGGAGAATTTTTCAGTAGCTTTTAACGAGAAATCGTTCACCA
CTGTCGCACTTGCTGATGAAATAAAG Run BLAST on NCBI transcript from alignment at sc0000136:445102..447375+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012035 ID=TCONS_00012035|Name=TCONS_00012035|organism=Clytia hemisphaerica|type=transcript|length=2274bp|location=Sequence derived from alignment at sc0000136:445102..447375+ (Clytia hemisphaerica)
CTTTTGCAAaaacttctttttcaatttttgtaaatttcattAGATAGATT
CGATTCGGATTGAAGGTGAGGTAAGTGATGGACAGTGATGTTTGAGTGTG
GCCGGTGATTGGATTAAGCAACTTGTTCACATAATTCGGAAGGGTGGGGA
TAAAATAGATGCTTGGGTATTTCCGTATAAAATCAAATTCCTTCAAGTAA
AGGTGTAAAGTGTACAATTAAGTACTCTCTCTAAAGGTCGTATTTACACT
TTGACGGTCTCTCTAACGGTccaaaagccaaaaaatgtaaaaagggAAGT
TTTGCGTTCCTCGCATAACCGATACTATCCAATCATAAAGTCCGCTCACT
TTAACTATGCACCCTTTTCTATCCGCTACCGTGTTGAAACCACATTAGCG
TAATTAGATTAATTGTCTCTTGACAGTGGCTTCCACATGATAAAAAAAGA
GTGCCCACTAAAGCGAATTAGCCTGTACTACCCCGCCGCCAAGggcgttt
tttatattttgaaaaaaaacttgtcATAACTTcgcgttatcttttcagtc
agcgaagaagagtCTGGTACAGGCTAAAGCGAATGAACTTCAGTACTCTC
ACGGTCCACATAACAGACCTAGGTATGTTCAACCTATAAATTTATCTTTC
TTCGATTTCACTCATCAGGATCAGTTGAACCAACATGATGCTGAAAGCAC
TTCACAAGTATCAATTGCAACTGTTGGCTTTGCAAAGTTTGGCAGACAAC
GCAGTCAAAAGCCTCTTGATAAACGCATTACAAGTCTGGTTAGGTAACca
agaaaatggggaaaatcCAAATAAAGATTCGATCAACAAAGTTCTTAGTA
AATTTTTGAGAAGTGAAAAGAACTCCTTGAAGAGAGGCTATTTCTTAGCT
TCGTTTGCAAAATTACAGAGTTTGATTTACGAGGATGTCACATTGCAGAA
GATCAAAGAGGAGATAGATATCTCTAAGCTGGATGTTCTCCTGGTTATCG
AGATTCTGGAAAACACAGCTCTCGGTCAATTGGAGGTAGTTGCAAATCTA
TCAAAAGCTTTGANGGAGATAGATATCTCTAAGCTGGATGTTCTCCTGGT
TATCGAGATTCTGGAAAACACAGCTCTCGGTCAATTGGAGGTAGTTGCAA
AGCTATCAAAAGCTTTGAAAGTGATTTCTAATTATCGTGTATTGGTTGCC
AATGAAAACAGTGAAGCATTCTGGGAGCAATTTGAGGAAAATGAAGATGG
TGTGCTTTTGAGTTTTGATGCTGGTGGTCCAAAAACATGGTCTACTATTT
GGAAAGAGAATACAAAGAGTGTTATGGATGTGGtgaaacatttacaccaa
agcaaTATGCTGAATGCTGTTGATTATCATCATCATTTGGAAGAGATAAG
ACTCTTTGGAAAGTGGTCTAAACAAGAAATTCTTCAGAATTGGTATCACC
AGATTGAAAAGCAGATCAAATCTTTATCTTTCTTACACAAGATTGAAAAG
CAAGTTCAGAAATATAAAGAAGTTGAGATTGTATTGAGAATCACAAATAT
TGGTTTGAAGATTAGGAAAAATGATGAGAGCTTTCTGTCCTCTTTTGTTG
CGTATTTGAAATCATTCTTCTACGAATCAAACACCAGAGTGGAACCAGAC
ACAATTGGTCGTATCGAAGATATCGAATTAGATTCTGAATTTGCCGACAT
GGTTAATATAAAGATGGGCTGCTTGATTAGTGCCTTATTTGGCGACCAAG
GGTTGGTGGAGAATTCCTTGGTCGAAGTTTCGAAAGGGGTTAAAGTCACC
GAGGCTAAAGACGAGGAAGATCGTTTGTTGCCAATAACATTGACATTTGA
ACTTGTCCAAAAACATAACTTCTGTAAATCTAGTTCGACCGAATCTTATG
AATTGTGGAAAACACTATCCGAAGAGATTACTCAATGCATCAAAGACACA
ATGTCGATTGATGTGGATTTGTTCAGAACAAGCTGGTTGAAGGAGGCTAA
TGGTAATAAAGTCACCGTTTTTATCATCAAGTATTCCTTAAAGCCTTGGT
TGCAATCTGAATGTGAAAACCTTATCCAGAATCTCCAAGACTGGACACAA
TTTACAACACCTGTTATCGGTGTGATGAACAACGATCAAATCATGGCAAA
CCTAGCTACAATGGTGTACCGAATTTCAACTTATAATCATCACTTCTTTG
ATGTGTTGGAGAATTTTTCAGTAGCTTTTAACGAGAAATCGTTCACCACT
GTCGCACTTGCTGATGAAATAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012035-exon-sc0000136-1491911889:445102..445171 | TCONS_00012035-exon-sc0000136-1491911889:445102..445171 | Clytia hemisphaerica | exon |
| TCONS_00012035-exon-sc0000136-1510915933:445102..445171 | TCONS_00012035-exon-sc0000136-1510915933:445102..445171 | Clytia hemisphaerica | exon |
| TCONS_00012035-exon-sc0000136-1575043694:445102..445171 | TCONS_00012035-exon-sc0000136-1575043694:445102..445171 | Clytia hemisphaerica | exon |
| TCONS_00012035-exon-sc0000136-1491911889:445770..447375 | TCONS_00012035-exon-sc0000136-1491911889:445770..447375 | Clytia hemisphaerica | exon |
| TCONS_00012035-exon-sc0000136-1510915933:445770..447375 | TCONS_00012035-exon-sc0000136-1510915933:445770..447375 | Clytia hemisphaerica | exon |
| TCONS_00012035-exon-sc0000136-1575043694:445770..447375 | TCONS_00012035-exon-sc0000136-1575043694:445770..447375 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000136 | supercontig | sc0000136:445102..447375 + |
Blast
The following BLAST results are available for this feature:
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