TCONS_00012013 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012013
Unique NameTCONS_00012013
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length675

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012013 ID=TCONS_00012013|Name=TCONS_00012013|organism=Clytia hemisphaerica|type=transcript|length=675bp
gTTGGGGATCGTTGTGAATTCTGAGGAATCGAAACTATAATCTTCCAAAA
AAATTCATACAGACAACATTCAAGGAATTATACTGGTATAAAAATGTTGA
ACAATCATACTGTGGCAGCTATCAGTTCTTCTCCGCATGCCACACGCATG
CGTATGGAACGAAATTCTTCAATGAAAAGGAGCCGAAGAATCTCGGAACC
TTTGAAGGCGCCCGATGCAACAAAACTCGATGTCCCACCACGATGGCAAA
GTGATGAAGTCAATAAATCTAAAAAGGTTTCCGTGTATAAAATGGACCTA
GATGAACCTTCAATTTCAACTGCTGGTCCGCAAAATAGACATCGTAAGAT
TTCCCGTGTGACGTCATCTCCGGTACCTGTACAACAGCATCGACCATCAT
CACGTAAAATATCGGCCCTTGAGTCTATCTATGATTTACAGCCCGGCGAG
ATTGACTGCCCATGCTTATTACACTGCAAACGGaaccaaagtttaaaaga
tTTGAAGAGAATTAATGAGCGAAACAGAAAGAAAAGTGCTTACTTGATGG
CAAATAATACGTCAGTCAGGGAAATGGTTTCAGTTGGGACTCAAACTGAG
CCGATAAAGAAATCAGGATTCAAACGGTTTATGACCTCCCTAAAGAACTG
ACATTGTATTTGTTGGGGGAATAAA
Run BLAST on NCBI

protein sequence of TCONS_00012013-protein

>TCONS_00012013-protein ID=TCONS_00012013-protein|Name=TCONS_00012013-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MLNNHTVAAISSSPHATRMRMERNSSMKRSRRISEPLKAPDATKLDVPPR
WQSDEVNKSKKVSVYKMDLDEPSISTAGPQNRHRKISRVTSSPVPVQQHR
PSSRKISALESIYDLQPGEIDCPCLLHCKRNQSLKDLKRINERNRKKSAY
LMANNTSVREMVSVGTQTEPIKKSGFKRFMTSLKN
Run BLAST on NCBI

transcript from alignment at sc0000134:288338..289012

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012013 ID=TCONS_00012013|Name=TCONS_00012013|organism=Clytia hemisphaerica|type=transcript|length=675bp|location=Sequence derived from alignment at sc0000134:288338..289012 (Clytia hemisphaerica)
TTTATTCCCCCAACAAATACAATGTCAGTTCTTTAGGGAGGTCATAAACC
GTTTGAATCCTGATTTCTTTATCGGCTCAGTTTGAGTCCCAACTGAAACC
ATTTCCCTGACTGACGTATTATTTGCCATCAAGTAAGCACTTTTCTTTCT
GTTTCGCTCATTAATTCTCTTCAAatcttttaaactttggttCCGTTTGC
AGTGTAATAAGCATGGGCAGTCAATCTCGCCGGGCTGTAAATCATAGATA
GACTCAAGGGCCGATATTTTACGTGATGATGGTCGATGCTGTTGTACAGG
TACCGGAGATGACGTCACACGGGAAATCTTACGATGTCTATTTTGCGGAC
CAGCAGTTGAAATTGAAGGTTCATCTAGGTCCATTTTATACACGGAAACC
TTTTTAGATTTATTGACTTCATCACTTTGCCATCGTGGTGGGACATCGAG
TTTTGTTGCATCGGGCGCCTTCAAAGGTTCCGAGATTCTTCGGCTCCTTT
TCATTGAAGAATTTCGTTCCATACGCATGCGTGTGGCATGCGGAGAAGAA
CTGATAGCTGCCACAGTATGATTGTTCAACATTTTTATACCAGTATAATT
CCTTGAATGTTGTCTGTATGAATTTTTTTGGAAGATTATAGTTTCGATTC
CTCAGAATTCACAACGATCCCCAAc

Coding sequence (CDS) from alignment at sc0000134:288338..289012

>TCONS_00012013 ID=TCONS_00012013|Name=TCONS_00012013|organism=Clytia hemisphaerica|type=CDS|length=558bp|location=Sequence derived from alignment at sc0000134:288338..289012 (Clytia hemisphaerica)
TCAGTTCTTTAGGGAGGTCATAAACCGTTTGAATCCTGATTTCTTTATCG
GCTCAGTTTGAGTCCCAACTGAAACCATTTCCCTGACTGACGTATTATTT
GCCATCAAGTAAGCACTTTTCTTTCTGTTTCGCTCATTAATTCTCTTCAA
atcttttaaactttggttCCGTTTGCAGTGTAATAAGCATGGGCAGTCAA
TCTCGCCGGGCTGTAAATCATAGATAGACTCAAGGGCCGATATTTTACGT
GATGATGGTCGATGCTGTTGTACAGGTACCGGAGATGACGTCACACGGGA
AATCTTACGATGTCTATTTTGCGGACCAGCAGTTGAAATTGAAGGTTCAT
CTAGGTCCATTTTATACACGGAAACCTTTTTAGATTTATTGACTTCATCA
CTTTGCCATCGTGGTGGGACATCGAGTTTTGTTGCATCGGGCGCCTTCAA
AGGTTCCGAGATTCTTCGGCTCCTTTTCATTGAAGAATTTCGTTCCATAC
GCATGCGTGTGGCATGCGGAGAAGAACTGATAGCTGCCACAGTATGATTG
TTCAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006747XLOC_006747Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012013-proteinTCONS_00012013-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012013-exon-sc0000134-1491911889:288338..289012TCONS_00012013-exon-sc0000134-1491911889:288338..289012Clytia hemisphaericaexon
TCONS_00012013-exon-sc0000134-1510915933:288338..289012TCONS_00012013-exon-sc0000134-1510915933:288338..289012Clytia hemisphaericaexon
TCONS_00012013-exon-sc0000134-1575043694:288338..289012TCONS_00012013-exon-sc0000134-1575043694:288338..289012Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134supercontigsc0000134:288338..289012 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0761325	0.0742412	0	0	3.18274	1.866	3.81733	5.77297	3.65686	5.72161	5.9392	2.6873	0.708867	0.315499	0.216153	0.185572	13.7166	5.15498	0.0809305	0.169376	22.8189	20.0344	4.97565	6.03144	10.1358	11.891	0.208786	0	0.591508	0.0860933
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012013 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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