|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011991 ID=TCONS_00011991|Name=TCONS_00011991|organism=Clytia hemisphaerica|type=transcript|length=4157bpRun BLAST on NCBI protein sequence of TCONS_00011991-protein >TCONS_00011991-protein ID=TCONS_00011991-protein|Name=TCONS_00011991-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1012bp NQQRHKTSKYIACQSSYQNKRHQAVLLKFVIQRQINMEGTPSPPPPPIDQRun BLAST on NCBI transcript from alignment at sc0000134:435814..479109- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011991 ID=TCONS_00011991|Name=TCONS_00011991|organism=Clytia hemisphaerica|type=transcript|length=43296bp|location=Sequence derived from alignment at sc0000134:435814..479109- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000134:435814..479109- >TCONS_00011991 ID=TCONS_00011991|Name=TCONS_00011991|organism=Clytia hemisphaerica|type=CDS|length=45585bp|location=Sequence derived from alignment at sc0000134:435814..479109- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011991 vs. Swiss-Prot (Human)
Match: RAPH1 (Ras-associated and pleckstrin homology domains-containing protein 1 OS=Homo sapiens GN=RAPH1 PE=1 SV=3) HSP 1 Score: 275.018 bits (702), Expect = 2.098e-75 Identity = 129/281 (45.91%), Postives = 196/281 (69.75%), Query Frame = 1
Query: 1357 ESKELTPEEQEARIKAEKMKIALEKMKAASFQKLFIKVLNTEKQTWKTMMVDQTWTVRDVTQKMVSKDDVEIEPNWCILEKLPDLDMERIMEDHEFVLNTALDWSRETENMLVFANRRDKYLLFRNPQNFLLSDYHSAEDARLAEKSKDLLLEEFFSKENTQIPQIEGLLSVRKGGSKKWEKHYVVLRASGVYYNPKGKQK-TRELSCLVQFEHNNIYLGVGYKKKYKAPTDHVICLKHPKIQNIKSKHIIYLCADDSKTMYHWLTCIRMAKYGYNMYEDY 2196
+ + +T EEQ A++KAEK+++ALEK+K A +KL I+V ++ + KTMMVD+ TVR V ++ K +W ++E + +L MERI EDHE ++ L+W+R+++N L+F R +KY LF+NPQN+LL +AE +A+++K++LLEE F + +P+IEG+L ++ G K W+K Y +LRASG+YY PKGK K +R+L C +Q +H N+Y G Y+ KYKAPTD+ + LKHP+IQ KS++I YLC DD +T++ W+ IR+AKYG +Y +Y
Sbjct: 238 QGQPITEEEQAAKLKAEKIRVALEKIKEAQVKKLVIRVHMSDDSS-KTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIFMERIEKYALFKNPQNYLLGKKETAE---MADRNKEVLLEECFCGSSVTVPEIEGVLWLKDDGKKSWKKRYFLLRASGIYYVPKGKAKVSRDLVCFLQLDHVNVYYGQDYRNKYKAPTDYCLVLKHPQIQK-KSQYIKYLCCDDVRTLHQWVNGIRIAKYGKQLYMNY 513 The following BLAST results are available for this feature:
BLAST of TCONS_00011991 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.