|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011986 ID=TCONS_00011986|Name=TCONS_00011986|organism=Clytia hemisphaerica|type=transcript|length=1408bp
tgaaaatattcaaacaaaaaggaaatttcacAAGTTGTTAAGAATTACCA
AAAATTGATTCTGATTTAAAATCAAAGCCAGTATAAGGCATGGGTACGGA
CCccaatttaatttgatttcaTTATATAAGATGGGGTTGGGTTTCATTTC
AATGTTATTACATCATAATTAGTTAATTTTTAAGGAGAAATCAGATTAGT
AATTTTTGAATGATTTGCAACTCAGTATAAAAGGGTTCAACATGAAGAAC
TGACATCACAGTTCACttgaccaccaatcaaacaacaaacaacaaagcAG
CAAAAGGAAAAAGATTCAATATTTATTAAAGATCTTGAATTAATTCAGCA
AAATGGCTTTGGTTTTTGTTCTAATCTCAATTGCATTATGCTTATGCAGT
AAGTATAtatactttgaatttttttatgaaaaatagttAATTGGTCTGTA
AATCTAATTTGATGACAATTTCTTTAGTCATTTCTGCTCATttctaaaaa
ttgttttaacAGTTTTCAGGTTTCCCTTTTATTAacttaattctttttca
aaatgagtGCATAGCCCTAAGGCTacaaaaaacaatgatattggTCTCAT
TCCAAGTTCTATTTGACCTGTTTTTCCTTTCCAGAACAGACACCTTCACC
AAATTCTTTGCTATGCCAtcaatcgtttttttttaatttccataACAGAC
ACCTTCCAATCGACATATGGTTTGTACGAGAAATGGAACAACAAAAATGA
ACTCAATCCTTACTTTATGAACGTCACTGGTCAAACACCTCCACCCAAGC
TTTGTTTTGATTCGATGTGCAATGGAAAAGCTGATGGAAATTATGAGGTT
AGATATCCAAATGGGGAATATGACCCAAATTATTTCTTGCAATGCTCTGG
AGGACAAGCTAACTGCCAACCCTGCTGGCCACAATCTTTAGAGTTCAGTC
AAACTTGCAATCAATGTTTGTACAGCCGTGATGACGAATGCTACACAACA
GAGGCTTGGAAACCAGCTTCAACCTATGATTGCCCTGACATCTGCGGACG
TATGGGACCAGAAGGACGGATGAACATCCGTGACCCTCAACAACCACGTC
AATATGTTGCTTGTTGGAATGGAATGACTGTTGGTTGCGTCAAATGTCCA
GGAAATCTTCTCTTCAACGAAACATTCAATGCTTGTTTGTACAATGGGAA
ATACTGGACACAATCAATCAATTAAGATAATCCTGATGAAAGTCTAGTTT
TGGTTAGATCCCTGCTGATAAGCAAATAAGTCTAAAAgtgctaaaatatt
tattccacAGTCGATAAATTCTATTATAATATATTATTTCTATCAACCTT
GACTTGACTTAactttataatttataatttttgattttgacttaaCTCTA
TAAAAGTG Run BLAST on NCBI transcript from alignment at sc0000134:395071..396897- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011986 ID=TCONS_00011986|Name=TCONS_00011986|organism=Clytia hemisphaerica|type=transcript|length=1827bp|location=Sequence derived from alignment at sc0000134:395071..396897- (Clytia hemisphaerica)
TGAAAATATTCAAACAAAAAGGAAATTTCACAAGTTGTTAAGAATTACCA
AAAATTGATTCTGATTTAAAATCAAAGCCAGTATAAGGCATGGGTACGGA
CCCCAATTTAATTTGATTTCATTATATAAGATGGGGTTGGGTTTCATTTC
AATGTTATTACATCATAATTAGTTAATTTTTAAGGAGAAATCAGATTAGT
AATTTTTGAATGATTTGCAACTCAGTATAAAAGGGTTCAACATGAAGAAC
TGACATCACAGTTCACTTGACCACCAATCAAACAACAAACAACAAAGCAG
CAAAAGGAAAAAGATTCAATATTTATTAAAGATCTTGAATTAATTCAGCA
AAATGGCTTTGGTTTTTGTTCTAATCTCAATTGCATTATGCTTATGCAGT
AAGTATATATACTTTGAATTTTTTTATGAAAAATAGTTAATTGGTCTGTA
AATCTAATTTGATGACAATTTCTTTAGTCATTTCTGCTCATTTCTAAAAA
TTGTTTTAACAGTTTTCAGGTTTCCCTTTTATTAACTTAATTCTTTTTCA
AAATGAGTGCATAGCCCTAAGGCTACAAAAAACAATGATATTGGTCTCAT
TCCAAGTTCTATTTGACCTGTTTTTCCTTTCCAGAACAGACACCTTCACC
AAATTCTTTGCTATGCCATCAATCGTTTTTTTTTAATTTCCATAACAGAC
ACCTTCCAATCGACATATGGTTTGTACGAGAAATGGAACAACAAAAATGA
ACTCAATCCTTACTTTATGAACGTCACTGGTCAAACACCTCCACCCAAGC
TTTGTGAGTTAACAACCCCTTTTTATTTGAAATCCTTCCATTTTTTCTGT
AGATTTTAACAAATAAAAGTTATATTTTGCAGGACAAATTTTCCTGGTGG
ATACAAACACAAAGTTTTGATTTGAAACTTTTGGTTAAAATGTTTGGTAA
AAACCATTGGTTTGCTAACCTTATTTTAAGCACCCCTTGAAAATATGCAT
CCTTTCTGAACTATAGGTTTTGATTCGATGTGCAATGGAAAAGCTGATGG
AAATTATGAGGTTAGATATCCAAATGGGGAATATGACCCAAATTATTTCT
TGCAATGCTCTGGAGGACAAGCTAACTGCCAACCCTGCTGGCCACAATCT
TTAGAGTTCAGTCAAACTTGCAATCAATGTTTGTACAGCCGTGATGGTAA
GACTAAAAGAATCATTTTATAGAAATATTACATTATTCAGACTTTTTCAA
TATGTTCAGTCACCTACCAAGAGACAAGACTCATTCAAGAGACTATGGCA
ATCAAATTAATGTTCTAAAAAGAACTTGCTGCTATACTCTATTCAGCTAA
TTTTTTTTACTTTTTAAACTTAATTTTTATTGAATTTCTATCTCATCCAT
AGACGAATGCTACACAACAGAGGCTTGGAAACCAGCTTCAACCTATGATT
GCCCTGACATCTGCGGACGTATGGGACCAGAAGGACGGATGAACATCCGT
GACCCTCAACAACCACGTCAATATGTTGCTTGTTGGAATGGAATGACTGT
TGGTTGCGTCAAATGTCCAGGAAATCTTCTCTTCAACGAAACATTCAATG
CTTGTTTGTACAATGGGAAATACTGGACACAATCAATCAATTAAGATAAT
CCTGATGAAAGTCTAGTTTTGGTTAGATCCCTGCTGATAAGCAAATAAGT
CTAAAAGTGCTAAAATATTTATTCCACAGTCGATAAATTCTATTATAATA
TATTATTTCTATCAACCTTGACTTGACTTAACTTTATAATTTATAATTTT
TGATTTTGACTTAACTCTATAAAAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011986-exon-sc0000134-1575043694:396095..396897 | TCONS_00011986-exon-sc0000134-1575043694:396095..396897 | Clytia hemisphaerica | exon |
| TCONS_00011986-exon-sc0000134-1575043694:395702..395881 | TCONS_00011986-exon-sc0000134-1575043694:395702..395881 | Clytia hemisphaerica | exon |
| TCONS_00011986-exon-sc0000134-1575043694:395071..395495 | TCONS_00011986-exon-sc0000134-1575043694:395071..395495 | Clytia hemisphaerica | exon |
| TCONS_00011986-exon-sc0000134-1510915933:396095..396897 | TCONS_00011986-exon-sc0000134-1510915933:396095..396897 | Clytia hemisphaerica | exon |
| TCONS_00011986-exon-sc0000134-1510915933:395702..395881 | TCONS_00011986-exon-sc0000134-1510915933:395702..395881 | Clytia hemisphaerica | exon |
| TCONS_00011986-exon-sc0000134-1510915933:395071..395495 | TCONS_00011986-exon-sc0000134-1510915933:395071..395495 | Clytia hemisphaerica | exon |
| TCONS_00011986-exon-sc0000134-1491911889:396095..396897 | TCONS_00011986-exon-sc0000134-1491911889:396095..396897 | Clytia hemisphaerica | exon |
| TCONS_00011986-exon-sc0000134-1491911889:395702..395881 | TCONS_00011986-exon-sc0000134-1491911889:395702..395881 | Clytia hemisphaerica | exon |
| TCONS_00011986-exon-sc0000134-1491911889:395071..395495 | TCONS_00011986-exon-sc0000134-1491911889:395071..395495 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000134 | supercontig | sc0000134:395071..396897 - |
Blast
The following BLAST results are available for this feature:
|
