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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011980 ID=TCONS_00011980|Name=TCONS_00011980|organism=Clytia hemisphaerica|type=transcript|length=2286bp
GTTTAATTTGGtaataattttgtattttggtTGTAAGGATACAGGTATAT
TGTATGTACAATAATAAGTTTGTCACGGAAAGGACTAGTTATTAATATTA
TCGAGATAATGTAAAATATTTACAGTATTAATACAGGCTCAAAAACAGAC
aaacaaatatataaaaaaactaatGCATACCAAAGCAAAAACACCAGaat
attgaaacaaataaaacatGGAACTGGGTAGGACTTAACAAACAATTCCA
AAATTCccatgacaaaaaaaaagaaagaaaagcacGAAAAGTGGATAAAT
TGAGacgataaaaaatatatataaactGAAAAATAATACATTATTATTAA
CCGTGCACAAAATCTAAGTGAAGGGTCTTAAGCCACTTTAACGATACTtg
acgtcaattgacgtttagAAATCCATTTAGATGAAAACATCATCTTGTTT
AGGGAACAAATTTGTAAACAGATTTAATCATAAAACAAACAGTCAATATG
ACATCAGGAAAATTGCAACATgggttttgaaaataaatgaaaaattggcC
GAAATAATATTTGATGTCATCTTAAAAAGTTTGCTCTGAGGATAACAAAC
TGTTGAGCTAAACAGATAAGAAAgtaattaaaatgaaaatataattcAGC
TAAATCACTCATTTCCTTGTCCAGGATAAGGAATTACGTTGATTGTAAAT
TAGTGTGCAATTGATTCATGCAAAGAAAGTAAGGCTGACCCACTCCACTC
CAAATTTTTGTACACTTAACAAATaagatttcactttttttaaattcata
tgAAAAATAATATCCTTCTAAAGTGCtaataaaaatatcattttgttgtt
tttagtcATCAGTTaagaaaaaagatatttaaacCATAAAAACTCTAAAA
CATACGTCTATTTACAAACATCAGCTCTATATTATGACACAAACCACCAA
CTTAATCTCCTTTACTACAGTATAAGTCCTTTAGAGATTTTAGTTCTTCT
ATTAGAGCTTTATTTTGGTTTTCTAGTACTGCAACTCTATTTTCTAGACA
TtttacatattcttttttcttCCGCCTGCATTCTCTGGCTGCTTCcctaa
aaatgaacaaaatcataaatttaGTTAATGTTATACTGACTAAAATGCTG
ATTTGGAGCTTTAAATTCAAGATCAATCAGCTGTTTGGTTAACAGCAGTA
TTTCATGCATTGAATTTAGCAAGCATAGTTTTTTCATCCTGAAATAGAta
aatttttagcttgtaagaAATCCATAAAATGCATCACAAATTGCAAATGC
GATGCCTTAATTTGGTATCTGGTGTTTTCTGCTAACTTTCTAAATTTGTT
AAAGAAATTCAGTTTCAGATTTAGAAACTGTTCTtgataaaatggtgaaa
attatTGTAAAAATCAAGCAATATTTACCTATTTTTGTATAACCTTAGTT
CTCTTTTCCTAGTTGCTTCTTCTGCCATTTGTTGAGGAGACGCTAGCGTT
GCACTTTCCAATCCAACAGGAAGAGAACCTTTTATTGTGTAAGCctgaaa
agtaaaatttgaaatttagtaAGATGCATATCTCTATTTCTTCTTATCTA
AAGATGAGCGGAATTAGACCAACGTCCGGTATTACACTAGCAGAATTATG
TTCATCCATTAAATTCTACGTACCTGGCCATCATTTAGCTGAACCACTGT
GCCACCAACTGAAGATGGGGGAGCAATTACGCCATTGAGTTGAATACTTT
GATATTGTTGTTGTGCTTGTTGCTGAGCCTGTTGCTGTTGTTGCTGGTGC
TGATGTTGCTGTTGAGCTTGTTGTTGTTTATCTGTCAATTCTTCTGGTCC
ACCAGGACTTGAAGCATCACTACTTCCATTATCATCATAGTTTTCCATTT
TGACTGGAGAATCTGCTGCCAGGTCATCAAGAATTTTTCTAGATAAAAAG
GAAGATTTTCATCTAAAAAACCTGGTGATATACACCATAAAATGAAATAT
ACTTTCATGATCTCCAACAAATCATCACTTAAACCAGTTAAAAAGGGGAA
AAATAAGCTCATAATTTGCAAGGCATTCTTCAACCCAATTCCAAGCAAGC
TGCCTGTTCCTAATAACTTGCATAAATTTTACgcgcaaaaataaaaacaa
acaaaaactatgTGCAGGTCCAAAAATTTGTCTAGCTTTACTAcagtgag
attgggtaacttacatcagtggaggctaacatgcatagccctaaaaTAAA
AGACCTGGCCGAtcattaaaaaatacaactacgcag Run BLAST on NCBI transcript from alignment at sc0000134:270191..272533- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011980 ID=TCONS_00011980|Name=TCONS_00011980|organism=Clytia hemisphaerica|type=transcript|length=2343bp|location=Sequence derived from alignment at sc0000134:270191..272533- (Clytia hemisphaerica)
GTTTAATTTGGTAATAATTTTGTATTTTGGTTGTAAGGATACAGGTATAT
TGTATGTACAATAATAAGTTTGTCACGGAAAGGACTAGTTATTAATATTA
TCGAGATAATGTAAAATATTTACAGTATTAATACAGGCTCAAAAACAGAC
AAACAAATATATAAAAAAACTAATGCATACCAAAGCAAAAACACCAGAAT
ATTGAAACAAATAAAACATGGAACTGGGTAGGACNACCAAAGCAAAAACA
CCAGAATATTGAAACAAATAAAACATGGAACTGGGTAGGACTTAACAAAC
AATTCCAAAATTCCCATGACAAAAAAAAAGAAAGAAAAGCACGAAAAGTG
GATAAATTGAGACGATAAAAAATATATATAAACTGAAAAATAATACATTA
TTATTAACCGTGCACAAAATCTAAGTGAAGGGTCTTAAGCCACTTTAACG
ATACTTGACGTCAATTGACGTTTAGAAATCCATTTAGATGAAAACATCAT
CTTGTTTAGGGAACAAATTTGTAAACAGATTTAATCATAAAACAAACAGT
CAATATGACATCAGGAAAATTGCAACATGGGTTTTGAAAATAAATGAAAA
ATTGGCCGAAATAATATTTGATGTCATCTTAAAAAGTTTGCTCTGAGGAT
AACAAACTGTTGAGCTAAACAGATAAGAAAGTAATTAAAATGAAAATATA
ATTCAGCTAAATCACTCATTTCCTTGTCCAGGATAAGGAATTACGTTGAT
TGTAAATTAGTGTGCAATTGATTCATGCAAAGAAAGTAAGGCTGACCCAC
TCCACTCCAAATTTTTGTACACTTAACAAATAAGATTTCACTTTTTTTAA
ATTCATATGAAAAATAATATCCTTCTAAAGTGCTAATAAAAATATCATTT
TGTTGTTTTTAGTCATCAGTTAAGAAAAAAGATATTTAAACCATAAAAAC
TCTAAAACATACGTCTATTTACAAACATCAGCTCTATATTATGACACAAA
CCACCAACTTAATCTCCTTTACTACAGTATAAGTCCTTTAGAGATTTTAG
TTCTTCTATTAGAGCTTTATTTTGGTTTTCTAGTACTGCAACTCTATTTT
CTAGACATTTTACATATTCTTTTTTCTTCCGCCTGCATTCTCTGGCTGCT
TCCCTAAAAATGAACAAAATCATAAATTTAGTTAATGTTATACTGACTAA
AATGCTGATTTGGAGCTTTAAATTCAAGATCAATCAGCTGTTTGGTTAAC
AGCAGTATTTCATGCATTGAATTTAGCAAGCATAGTTTTTTCATCCTGAA
ATAGATAAATTTTTAGCTTGTAAGAAATCCATAAAATGCATCACAAATTG
CAAATGCGATGCCTTAATTTGGTATCTGGTGTTTTCTGCTAACTTTCTAA
ATTTGTTAAAGAAATTCAGTTTCAGATTTAGAAACTGTTCTTGATAAAAT
GGTGAAAATTATTGTAAAAATCAAGCAATATTTACCTATTTTTGTATAAC
CTTAGTTCTCTTTTCCTAGTTGCTTCTTCTGCCATTTGTTGAGGAGACGC
TAGCGTTGCACTTTCCAATCCAACAGGAAGAGAACCTTTTATTGTGTAAG
CCTGAAAAGTAAAATTTGAAATTTAGTAAGATGCATATCTCTATTTCTTC
TTATCTAAAGATGAGCGGAATTAGACCAACGTCCGGTATTACACTAGCAG
AATTATGTTCATCCATTAAATTCTACGTACCTGGCCATCATTTAGCTGAA
CCACTGTGCCACCAACTGAAGATGGGGGAGCAATTACGCCATTGAGTTGA
ATACTTTGATATTGTTGTTGTGCTTGTTGCTGAGCCTGTTGCTGTTGTTG
CTGGTGCTGATGTTGCTGTTGAGCTTGTTGTTGTTTATCTGTCAATTCTT
CTGGTCCACCAGGACTTGAAGCATCACTACTTCCATTATCATCATAGTTT
TCCATTTTGACTGGAGAATCTGCTGCCAGGTCATCAAGAATTTTTCTAGA
TAAAAAGGAAGATTTTCATCTAAAAAACCTGGTGATATACACCATAAAAT
GAAATATACTTTCATGATCTCCAACAAATCATCACTTAAACCAGTTAAAA
AGGGGAAAAATAAGCTCATAATTTGCAAGGCATTCTTCAACCCAATTCCA
AGCAAGCTGCCTGTTCCTAATAACTTGCATAAATTTTACGCGCAAAAATA
AAAACAAACAAAAACTATGTGCAGGTCCAAAAATTTGTCTAGCTTTACTA
CAGTGAGATTGGGTAACTTACATCAGTGGAGGCTAACATGCATAGCCCTA
AAATAAAAGACCTGGCCGATCATTAAAAAATACAACTACGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011980-exon-sc0000134-1575043694:272317..272533 | TCONS_00011980-exon-sc0000134-1575043694:272317..272533 | Clytia hemisphaerica | exon |
| TCONS_00011980-exon-sc0000134-1575043694:270191..272259 | TCONS_00011980-exon-sc0000134-1575043694:270191..272259 | Clytia hemisphaerica | exon |
| TCONS_00011980-exon-sc0000134-1510915933:272317..272533 | TCONS_00011980-exon-sc0000134-1510915933:272317..272533 | Clytia hemisphaerica | exon |
| TCONS_00011980-exon-sc0000134-1510915933:270191..272259 | TCONS_00011980-exon-sc0000134-1510915933:270191..272259 | Clytia hemisphaerica | exon |
| TCONS_00011980-exon-sc0000134-1491911889:272317..272533 | TCONS_00011980-exon-sc0000134-1491911889:272317..272533 | Clytia hemisphaerica | exon |
| TCONS_00011980-exon-sc0000134-1491911889:270191..272259 | TCONS_00011980-exon-sc0000134-1491911889:270191..272259 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000134 | supercontig | sc0000134:270191..272533 - |
Blast
The following BLAST results are available for this feature:
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