TCONS_00011963 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011963
Unique NameTCONS_00011963
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length5281

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011963 ID=TCONS_00011963|Name=TCONS_00011963|organism=Clytia hemisphaerica|type=transcript|length=5281bp
cttcatttttgcctttttttctgtcaaatgAAAGAGTAAAGAATGCTGTT
GACACGTGTGAACCGACCCTTTACTTCGCATCAGAGCAGACAGATCAGAA
AGAATCGAGTTGGAGGAGCTGGTAGCAGTAAAATGACCGATATTGATCAC
TCGCCACAGCTTGGAGGCTATGATGCTGACTTCGTTAACGGTCTGCCAAC
CGAATATGAATGTCCGATATGTCAAATGGCGTTCAAAGATCCGGTACAAT
TAGAAGAATGTGGACATCGGTTTTGCCAGTCGTGTTTGAATGAGATCAAA
CGAAGGTGTTTTTGGATAAAGCAGCGCGAAGAGCAGTCTTGGGATTGATG
ATCAAATGTGATAATGCAAAGAGAAAATGTGACTGGACTGGAGAGCTAAG
TACAATAGAGgaCCATTTGAAGACGTGTCCGTACGCTGATATCATGTGTC
CGAATGAACAATGTCAAGACTCATTCCCAAGGAGAGCTCTTCAAAACCAT
CTTCAATCAAGATGTAAATTTCGTATATTGGCTTGTCAATTCTGTAAAGA
AAAATGTGTTTATAAAGACATCAAgACTCACATGAAGCAATGCAAACGAG
TACCTTTGGAATGTATCAATAAATGTGGTGTCAAAGATATCCCAAGGGAG
GAGatgggGGCACATATCAACGAATGTCCGTTATCAGTTTTACCGTGTCC
ATATTCTGATATCGGATGTCCTTATAAGGGTCGTAAAGATGTACTCGATG
AACATGTCCGTCTCACAGTAAACGACCATCTCGCTATGGCGGTCGCTAAA
GTGCGAGCGAACGAATCACGCTCCATCTGCACGAACGGTCTCTTTATTTG
GCCTATCAAAAACTTTCGCGCACAATTTGAAGCAGCTAAATTATCAGACG
AGGAATTAGCGATTTTCAGTCAGCCCTTCTATACTTCACAGTATGGGTAT
AAATTACGCATCAAAGCTTATCTAAATGGACGTGACCGAGGCAAAGGAAC
CCATCTGTCCTTATATCTTATTATTATGAAAGGCGAGTATGACGCACTCC
TAGAGTGGCCTTTcaaccaaaaaatcacattttatCTCTTGGATCAAGGC
GATCAACGCAAACATAAAGTACATCAATTGAGTCCTAATCGATCGCTACC
AAACGTCCGCGCGGTCTTTAATAAACCATCGGGAAAAGAGAACTTGGGAA
TAGGTAATCCCAGTTTTGTTTCACATGAAGTTATTGATGCTGGTGATTAT
GTGCATGATAATACGATATACATCAAATGTGAAATTGAATCTTTAAATGG
TTGATATGGGGAGCTTTTCTTGAATCATTTCAAAGAAGACTCCGGTTGTA
TGTACAATCAACTCTCTCCAATTCGAACCTttacaatttgaatttttctg
taattcgaactaagatATTAGTCCTCTCAGCTGAAAAGTCGCTTAAATTA
CCCCCCGTAATTCTGATtccttctataattcgaagaagATTTTAggcccc
ttgaagatcgaattagagagagtcaacagTATACGCTATTGAATCATGAT
GGTTATGGATACACTTATTCGGATACACCCGAGAGATACCAGTGTTTGTC
CTCTCTAACACTCAATTTATTCTCGAGTTTGTTTATTGAAGGGCCCAAAC
AACTCGATCAACTTAAGAAGAAATTCTAGTGAAAGAGCTTCGTGCTATGG
AGATTTCAGTCTAAATTCAAAGTTCACAGTACTTATGTAGCTACAAATTg
cttacttaaaaaaaaataatcgccaacaatagatcttttcataaattacg
ttaggaacatcacttgccttgttttgaaattattgccatggtgattaatt
CCTAATTCATCAAAAAATCACTTCATGTCTCAAGGGTCATAAtgaccatg
gtaattgtttgaatacgaggcaagtgatgttcgtgacgtaatttatgaaa
aggtcttcCTGTAGTTTCTTTTCCTACAGAATCAGACAAATTTCCACTCT
CATCAATTCACTGAACTTTCAAAATATCATTTAGTTTACGGTATcgaaat
taaaattaaacttgtacataatattttttctttNACAAATTTCCACTCTC
ATCAATTCTCTGAACTTTGAAAATATCATTTAGTTTTAAATTTTACGGTA
TcgaaattaaaattaaacttGTACATAATatgtaatattttttcttttgc
taAATAATTTGttaatatatctctaatccaataaaaattcaaaataaatc
tgctaataatatttctaaatatacatttaaatgctatgagattaaaaatt
ttcttttatacaTTTATTGAAATCTTAATTAAAAAatcatgtttaaaaaa
attttataagaatctttGAGAATTAATTTTATCGGGATTTTATCACATCA
TAAACTTGAGCTTGCATGCCTTATTTCCTCTCTTTCTCTAATTTGTGTTT
AATTCGAAGaaacttttcgatttttaatGATCTAAAttcgggacgagatg
gagtttttacaagctcttatttgatttggttggtcgtcaatcagtaataa
aacaattttgttactttttctaaagaacgcgtcatttttgttacttcaaa
tgaccaatttaattattaaagtatcttataaaaactccatctcatctgtt
aAATTCTTACATACCCAACCAGCTTCAGCCACATTTAAAACACACATTTC
AAATTCTGCTGTACAACTAAGATGCTCcttaagaaaatgagaaaatcatA
AAAGAATGGAATTTATATAAATAGAAATACATTTTTAATgtgaattttta
taaaatacaatcaactctctctaattcgaacctctactatttgaacgttt
tttttaattcgaacTACAACCAATATATCATGGCACATAACACCCCCCTC
CACTCCGAACAATGTTGGAGGGAAATAAATATTGCTTGGCCGGTCCTTAG
CTTGCCCCAACAACATTTTTTGGGGGGAAGAGAAGGGGATGCTCATTTTT
GTGCTTTTGTGCCAAAGGTTTTGTCAATGTATTTGTCCTCTCAGCTagaa
attagtataaaatactttctgtaattcgaatcttcctCTAATTTGAAGAA
CATCTTTGGGCCCTtgaatgtcgaattagagagagtcaactaattgctcc
atttttttctaaaacgcattttgtttactttgagaatcgaaaattttttg
attaaacaaaaataatttccgtttattttaacttttctaaattcaaaagg
atgataaattttcaggattttacTCAATTTAAAATCGTCTACTTTTTTAC
ACATTAcctacagtgtgtcccaaaaaaaggacGCATTTTTTATATTAAAT
AAAATCCTCCTTGTTTatgccaaattttatgacttgtatTACTTgatatt
tcaatctcaaaaagcTTTCCAATAATCTTGGGtattgaatatctattgat
tgaacagagaattgctaacttatttcaattattttaagtCCAGTTTGGAT
AATGAGTTtcgaggattttactttatacagaaatttgtccgctttttcCG
GGACACGCTATACATGTAACATTTATTCAATCTGATGAATATGCATTTTT
CTTAGATGTAAAGCTTTCAGCAAGTGACATAATAATAGCTGGAAGATCTT
CAATCATTTTTTCAGGATATTTCATAATATTCGTATCACTCAGTGCTCCA
GTGTATATAAATCCATTATAACTCATTATTGAAATCGACGACCCGATGCT
ATCCTTACCGGGTGGCCAGAAGACTAAAGAACTTAATTTATTTCCAGCAA
GCATTAACTCGTGGGATGGCCCTTGGACATTAGATACAATCATTACAGCA
TTACTAGCAGATGATCGAATGATCTCCTGCATAGCACAGTTCGGTGTCAT
TTCAGCTAAAAGACGCAACCCAATTCGCATACTCATTCCTTCTAAAGAAT
CTTTCCTAGACTTCATTCGATCGtgaatttccaaaatatttctgaTCGAA
TCGGCGCTTGATGTGGGTAGCGGAAGCATAGTAATGTTTATTTTATTACT
GAATTCTTTAGCCTGTTCAAGTGAAAGCCTGGTATCTAACGGTATACACG
TGATCAAATTATGAGGCGCCTTTTCGTTCTTTTTTCGGAAAAAGTTATGT
AGGCTAGTTGCTATGCAACCCAAAATGACATCATTGATCGTGACATTTAA
GTTTCGTTTGATAATTTTGATAAGTTCCAGATTAATTGGTCGAGCGTAAA
TATAACGTTTCTTTCCGGATAAGGAGGCTTCCGGACAGTTCAACGATGTC
GGGCGCGTCCATTGCGGAGCTAAGGTTTTCGCCACATTGTAAGGGTagta
aattgaagattttaGATAAATCATTGATTTTTGTGTAAAGGAAATCTGAT
GTTCTGGGCCAGCTAAGTATCCATTATTGTTGGAATCGTCACACAAATGG
TTTATGAGAAAATACATAAGAGAAGTTCCATCAGCTAAACAATGTGAAAT
CCGTACTATAATTCCGGATTGTATGAACCCATCTGTATTTCTACAATGAA
CTACAACAAATTCCCATGGCGATTTATTGTCTGAGGATCGAAGTGGACGT
TCAGCAAGTTTGGATATTAAGTCTTGTAACTGATTTTTAGATCGGCATGG
ATTTTCACTCCATTCGTAAACATGATCTTTAAGTTTGAAATTCGTTTCTT
CCAACCAGTAATAATTTAAGTATCCTGTATGAACATATTCAGTCACTCTT
GGATATAATAACTTCCCTGTTTTTGTATTACGTGCTTTAACTAATTTTCG
GTCCATTAAACCCTGGAATTTTTTAATACCCAATTTCCCTTCAAGCATTA
ATAGACAGTTGATGTCGGTACGATTTCGGGGCGTATCAGTTAACCAGGGC
GTTTCCTCAGTTTTGAAATGTAAGGCTCTGTATAAGATTCGATAGACGAT
TTCTTCTAGTTTACGAGTTATGAGGATTGTCATGCTGAATGGGAGCAAAG
GAATTGTGGTGCAGATAATGATGGTCCATGACGTCACCAGAAAAATCAAG
AATCCAAAACGACTGAGTAGTTTCAATATCATTGCTGCAGAATGTTGTTA
CTTTTTGTTCGTCTGAAAGATAGAATAGATCAAGGATTTATAAATCAAGA
TTTATTCAAAGTTGGAAAAGCTAGACATGGTTCATCCTGTATCAGACTCT
CTCATTCCAACATCCAACAAAAATTGATCATCGAACACATCACAGtacaa
attgaaaaatcataaaacgTAAATGTTTAAA
Run BLAST on NCBI

transcript from alignment at sc0000134:405930..420182+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011963 ID=TCONS_00011963|Name=TCONS_00011963|organism=Clytia hemisphaerica|type=transcript|length=14253bp|location=Sequence derived from alignment at sc0000134:405930..420182+ (Clytia hemisphaerica)
cttcatttttgcctttttttctgGTATTCTAATATTTTGGTATTGCGttt
gtcttttttttgctaACGACAAAAAGTACGAATTAATTTAATGAATTGTG
TCTATTCGCTTTAATtgtgcaatatttttattttgcttgCCATTTTCCAT
CAAATGTAACAAattatataccgttgaaaagatcaTTTGGAGCGCTATAA
TTGTTTAGtcaaaataattcaaaagattttagaaaatgaagatgaaaatt
gaagaagaaaatttttatccttagatagaaacttcatttttgaaatagcA
GCAGAAAAATGGGGTTTTTGTTTCTAACGAACTACCTTCTATAGCCTTAG
ACTGTGAAATGACTATGGAAAATAAatcgttcgagttatggagatatACG
AGTTTTTAGAGACTCAAGTCTCAgcaatatttcttttcattttattgaGA
AACAAATTAAGAGTAACAGTAAATTCGACTCTTGCTTTTAGGGAAGTTTT
TAACGCGCAatgaattttggttgtttttctaTCGGTCAACTGTTTTTCTA
TTCAAATAACAGttccgtagcaactggggggggggggggaagggggggNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAACATT
TGAGTTTTATCGATGTTCGAATTATGGATGAATTCGATTTTAGGGTTCGA
AATTTAGGGTCAAATTCTGGAGTAATTCGAGTAATCCACGAATGGTGGGA
GAAATTCGAATTGTTAATGGTCAAGTAATAGGGAAATTCAAGTTACTGGG
TTCAAAATTATGGAAAAATCTGAGCTATTTAGGGTCGAGTTATAGAGGAC
TTAGAGGAATTTATTGAGTTTCGTGTCAATGAAAAATTCGAGTCttcttt
aaagttgattttatatttttttttcagtcaaatgAAAGAGTAAAGAATGC
TGTTGACACGTGTGAACCGACCCTTTACTTCGCATCAGGTGAGTTTAATT
AAGATTTTTATACCCCACGCCACTTACTTTAATTGGGTagatttttcgcg
gggatttttAAATCTCGTGGTCGAGcttatcaaattttttaatattatcG
AAACATTGGAATAAAATGTttacaggtaatatttcaaatcgAATAATAGG
TGTCTTCTACTTTGGAATAGAGTTAGGGAGATACGCATTACaatatcaaa
agttgaatttgaatttcgatgACGGTGTGGATTTAGAAAATTTCGCTGat
tacaaaaaataacaatttttagcgtaaatttaatttttcggATGGACCCT
TTCCTTATTCCCAATGGACTTAATATCGCCGTTGACACCCAATTCCGCAA
AAtctgcgaaaatttatcccattaaagtatatttACACCCCTCGTCAAGC
CATGATTTTTTACACAGCTATGTAAAGTGAATCCTTAAAATATGAGTCTT
CAaggttttcaaaagaaaacatttacaacgcaaatttgggccaaatttcg
GATTTGTGGAAGTTGCTTCATTCaattttatctttttgtttATGCCCAAA
ACTCCTTGGGACTCCTTAGCTCTTAAACATCGGAAAGCCAACATGATATG
cccaaaaaattatattttcgaaaattgggctccatcagattttaaaccag
aaaaaaataccaagacAGTTGCATGTTTTCAAGCTTACACATCTCTATGC
TATGTTGttgttatctttttttctcgaacattttcattttcattcagtat
gtttCCGACTACCtatatcaggtaggtccattcagcatgttgcttgttaa
gtTCTCTTGCCAATTTCcacgatggtgatattcttagcttaTTCTTAAAC
TTTTTGACCATTTATTATGAACATCtaataaagtatattcttatgaaaaa
agcgtgtacaattTTATTGTCTAATTCTCATCTCTGGTGACATTTCCAAT
AATCTTGTCCATCTTTCTGAGTTgcacgttgtttttttataaaaacatcc
aaaatttttgaagcctttagatgttcttaattgtttgaggcttaagccta
aaaatgttcttaacatgttcttattttctccattccGTGagaatttttgt
tcattttccttcaaaatcgGGTTAAGccgtccgcgaagccttaaaatgtt
ctcaacttgttcttaatattttggccatcgaagccttatgttcttatata
gtttgttcttataaaaaacgtgtagaagaTTAAGtaatgaattgtttttt
tttgtagcaCTTGATAATTGGCCCTGTTCTAACCTTTTAGCACTGTAAAA
GAGTAATCAatattaaagattttgtttttaaataagagtaatatcgtttg
ctcaattttaattcacaagctttttcacattggattgacacgaatgtgga
gcaagattggtcagaatgaggaaaagaaaaataatttttttcgcttatgt
cagcataatataacaataggcagacactgtcctgatacgAAATATGTGTN
TACAAGtatttgcttatatcagcataatataacaataggcagacacagTC
CTGATacgaaatatgtgtctgatatgaaacgggaacagttatgtaagaat
aaaacctttaaagggtGCTCAccatgataaaaaaactcacttAAAATAGT
CTTCGTTGCTAATGGTAACTCCCTTAAAAAAACTCTTGTTTTTAAATAGG
TGAATAGAGTGTTTGAAAGAGATATATTCAAGAtaacttttaatatttta
taaGTTAGTTATTCTAACTTATCTATTGGAACCCTTCTCTTCAATtcaat
tttgtgtttttcaggGAATAGTTGTTTgtcaaatgaagaaaaaatccact
ttttttcaaaaattatcttttcattgACTTAGAATGACAATCTGTCGGTG
CTatcttattgaaatttttagatTGACGGATAGAGTTAATAAGTTTTATC
CaatctctgaaaatttttttgacaaaaaaaatttaaagattatATTTCTT
CAAGCAACAAGCTCACGATAAAAACAGCTGGTTTTAGTATTGAAAGTTAT
acactaaatttttttttcttgtttatgaaaatttaagtgTAAATTGTTCT
TGAAAGTTTTATCAATacttttgattgatttattgagaACTTGTGTTTTC
TTGAATATCGATTCTTCTCTTTTTCGATTCACTTTCCCGAATTCAATATT
TCTTGAATTCGTTtaaagagaaatatttttaaattaatatatatttttta
caacaagTGTATATAATATCAAAATCAGAATTTCTGTTACTAAGAAATTT
ACATAACTTAAAACAAGGATATTTATGTTTTTCCATGTTCTCAAGCTGGG
ATAtttttgttacaaattttttctctttttttatgtGTTTACTTAAAATT
TAGTCGTAAAGTTCTCTATTTCTCTcggatttatttttcaaattatattt
ttcttgatatttttaatgGGATGTCTTAAAAGGACTAAGGAGGAGTTAAA
GTTGCtcatttcaagtttttctttgttttttttttcatatgttCTCTTAA
AGTGTTTGGCACCAAAATAAAATAGGGCTGGAAcgtggggggaggggggt
tggcggatgaggggtatgtgtgaTGTGTGGTATGTGCGATGAGCGGACGA
AACCTTCGTAAACCGATTCTAAGAGAAAacatttttagtgaaaaagtgcc
CCGCAGAGAAACTTtaactagtttactagtctattaagaatacttcattt
ttttctactttAGAGCAGACAGATCAGAAAGAATCGAGTTGGAGGAGCTG
GTAGCAGTAAAATGACCGATATTGATCACTCGCCACAGCTTGGAGGCTAT
GATGCTGACTTCGTTAACGGTCTGCCAACCGAATATGAATGTCCGATATG
TCAAATGGCGTTCAAAGATCCGGTACAATTAGAAGAATGTGGACATCGGT
TTTGCCAGTCGTGTTTGAATGAGATCAAACGAAGGTACGTGCCCTTTTTA
AACCCACCCATTTTACACTGGTCATCGATCCGCCATAgacccaaaaataa
cgccaataatgGCCGGTGTAAAAGAACGGATAGATAAGTTATTAGGAGAT
CTTAAAGATCTTAAGCGCTAAAACGACTTAAAATTTAAccattgaaattt
tcaatagaattgTAGTTTTTCACTATAAATTATCCTTACAAGTCATTGTG
ATTTATTTGAGTGTTTTTTTGCGAATTTGATTtagaattcaatttttata
ataaGATGTTTGTGTGATTTGCTAAGTGTCTGAAGAAATTTAGCCACGTT
ACGGCTTAGTACATTGTTGTAACGTATATACTTTTTCATATTGTAGACAA
AATGGCGGTATCCTAACTTGTCCATTGGACCGTCAAGAAGTTGACCCTGA
TAAAGTgagtaaaagctttttttaaaagaagttatttttgttttctagtT
CTAAGTACAAAGGTGCATaaggtgtttttttataagaacatccaaaactt
ttgaagccttcggatgttcttaactttttgagttttttataAACAAGTTG
TTCCCCTTTCACGGTTAAAAAGTTTATATCTATATCGCTAAtatcattct
tttttttcatgGGAAACTGCCAgcctaaaataatttaaaactttttcatc
ttAAGTACATAGTGAATAGAAAACATTATCCAAAAATTACACGTTAGCTC
AAAATATTAAACGAACAATATGTATCACGAAGAGCAGAAAGTTTTTAGTT
TCTTAAATCTTTGAAACTTTATTTTACgctttaatttttcataaaacgtG
ATAGTTAGTTTTCAAGTTAGAGTTTTTCATTCGAGAGATTGAGAGAAAAC
GTGCCCAGTCTTAATAAACTTATAAGTCTTATAACAAGCACAAATACTGC
GCTGTTCTGAAGGATTCACAACTAGTACATAACTAATAATTCAACATTCA
TCCAATGTTATATAATGTGGATGATATGAACGTTCGGATTGGATTTGTAT
TTACGCTAGCCGACTGTAACTTGAAATCAGATACTTTTTACTATCCCAGT
ATTCTAAAGTTCTTCAGGGGTGgtgaaaatgaacttttttagcgattttc
agACCTTCAACGTACAGAGACCCGATGATATCTACGGAAATTTTACGAGC
ATTGCCGTAGAGGAGATCTATACTACGTTatacgtgagatacactctggt
gcAGAGTAGCCGAGGGTGTGGTGTGGTGGTGTGTCTTGATACTACAATAG
TATTTATTTAATTCCAGGTGTTTTTGGATAAAGCAGCGCGAAGAGCAGTC
TTGGGATTGATGATCAAATGTGATAATGCAAAGAGAAAATGTGACTGGAC
TGGAGAGCTAAGTACAATAGAGGTATGCTCCATTTGAAATCGTTAGTacc
gaaattaaaaaatcaagacCCCGACATTTTTAATCGAACAGGGCCTTTCT
TCTGTCTGCCTTTTTATCATAGCTTAGTTTAAAATCTGTCTCAATGGTAT
AGGCAGctatactttttgaaaaattaattgaaacatttCCCGCGACATTT
CCTTTCCAGGACTCTTGTTTGAGTGGATTAGAAACACTATCTTTAAATGA
ATTTTAGTCTAGAAAACTAGTTTTAGCGGCCACTGTTAACCTTACCTTAA
GCAAGTTTCAAGTTTCAATAAGATTTTAACGAAGATGTGAAGAGGAATAA
Tagacttttttataaattacgtcacgaacatcacttgcctcgttttgaaa
ttattgccaaggtgattaactcccagcggatttttttaaaactactttct
attcataaaaaaatcatttaatgtctcaagggatataatcaccatgttaa
ttgtttgaatacgaggcaagtgatgattgtgacataatttatgaaaaggt
ctattatattatgctttttttgaatttcaggaCCATTTGAAGACGTGTCC
GTACGCTGATATCATGTGTCCGAATGAACAATGTCAAGACTCATTCCCAA
GGAGAGCTCTTCAAAACCATCTTCAATCAAGATGTAAATTTCGTATATTG
GCTTGTCAATTCTGTAAAGAAAAATGTGTTTATAAAGACATCAAggtatg
tacacgtttttttataagaacatccaaaattttttaaagccttcgaatgt
tcttaatttttagttttaagcctaaaaatgtttttaacatgttctttttc
accattttgggagtatttttgtccatttatCTAAGAAATCGgttgtgttt
tagagtccacaaagccttaaaatgttctttaaaactcgttcttaacattt
tggtcatcgaagccttatgttgttatatagtttgttcttatataaaaacg
aGTCTTCTTCCAAGCAGTATGTAGTATGAACCTCAAAACTACAAAACGAC
AGGTAGTATGTATATACGAATTCTTTAGTAAAGCGGCACCCTAATATCAG
tttactttaatttttcaatatttttttcattcgcCAGACTCACATGAAGC
AATGCAAACGAGTACCTTTGGAATGTATCAATAAATGTGGTGTCAAAGAT
ATCCCAAGGGAGGAGGTATGTAGTTAATATTATATTAAACCACCAGAAAA
ACCGGAAGAGATCGAAAGATACGTTAGGGTTTTGCTCATTCTCTCACGAG
GTTTCCAATTAGAATTAGTTCTCTGTCGAGATTCGATGTAGCAGGCATGA
AAACTATCAAGCCAAAATTTGATTGGATATTAATAGTTTGTTAGTTAATG
TATGCAGTTTTGAACCAATAAGAACTTGTTTACtgatatttttcgtgtaa
aTGACCAAAGAACCAAGGcaaagaaaattgaattataCAAAACATATTGT
AAATTCTAATTCTCTGATGGGTTGTTTGAAAAGGACCTGTTTTTCAAATC
AtcacttaaatatttttttcattttcatatggGGTGCATATCATTGAACT
GAGATTCGTTTTGATATTGTAGTTTTttcagagagagagagagagagaga
gagagcttTAAGATTGAAAATCAACTGGCGCtattctaatatttaaaatA
TTAGACTTTGCTTAAACTTCTATATGAAAAGGAGGaatattttgtaatat
tttatcaaaactgtatttttattctctttctttttataacaaGCTCTTAC
TAAGTGACTGATAAAATTACAATATACAGTACTGTACGCGAGGACTTTGT
GATGTTTTGATGGCGATATCTATTTGGGAACTTTTCACCAAAAGCTCAAA
TTCTTTCATGCTAAAATTTcttaaatagaaaatatttataatttgtattt
tttttttcagatgggGGCACATATCAACGAATGTCCGTTATCAGTTTTAC
CGTGTCCATATTCTGATATCGGATGTCCTTATAAGGTAAGGGAGTGCTTC
CAATGGAAATACTTTTcacccatagatttataaacaTCTTCTTAtagaca
tctagcccttcggggtttacagaaatctgtgttTTCACCATTTAATAGCC
TATGGTGAAGCTAATTTTCGTGTTGGACAGTTCCCGtcaaaatatattat
atttgtaTAGCAAATGAAGCTCTTTACCTTCCTTACAttgaaattttcga
atttttaaggtcaggcattttttaaactttattatTCTATTGATTTTCAG
GGTCGTAAAGATGTACTCGATGAACATGTCCGTCTCACAGTAAACGACCA
TCTCGCTATGGCGGTCGCTAAAGTGCGAGCGAACGAATCACGCTCCATCT
GCACGAACGGTCTCTTTATTTGGCCTATCAAAAACTTTCGCGCACAATTT
GAAGCAGCTAAATTATCAGACGAGGAATTAGCGATTTTCAGTCAGCCCTT
CTATACTTCACAGTATGGGTATAAATTACGCATCAAAGCTTATCTAAATG
GACGTGACCGAGGCAAAGGAACCCATCTGTCCTTATATCTTATTATTATG
AAAGGCGAGTATGACGCACTCCTAGAGTGGCCTTTcaaccaaaaaatcac
attttatCTCTTGGATCAAGGCGATCAACGCAAACATAAAGTACATCAAT
TGAGTCCTAATCGATCGCTACCAAACGTCCGCGCGGTCTTTAATAAACCA
TCGGGAAAAGAGAACTTGGGAATAGGTAATCCCAGTTTTGTTTCACATGA
AGTTATTGATGCTGGTGATTATGTGCATGATAATACGATATACATCAAAT
GTGAAATTGAATCTTTAAATGGTTGATATGGGGAGCTTTTCTTGAATCAT
TTCAAAGAAGACTCCGGTTGTATGTACAATCAACTCTCTCCAATTCGAAC
CTttacaatttgaatttttctgtaattcgaactaagatATTAGTCCTCTC
AGCTGAAAAGTCGCTTAAATTACCCCCCGTAATTCTGATtccttctataa
ttcgaagaagATTTTAggccccttgaagatcgaattagagagagtcaaca
gTATACGCTATTGAATCATGATGGTTATGGATACACTTATTCGGATACAC
CCGAGAGATACCAGTGTTTGTCCTCTCTAACACTCAATTTATTCTCGAGT
TTGTTTATTGAAGGGCCCAAACAACTCGATCAACTTAAGAAGAAATTCTA
GTGAAAGAGCTTCGTGCTATGGAGATTTCAGTCTAAATTCAAAGTTCACA
GTACTTATGTAGCTACAAATTgcttacttaaaaaaaaataatcgccaaca
atagatcttttcataaattacgttaggaacatcacttgccttgttttgaa
attattgccatggtgattaattCCTAATTCATCAAAAAATCACTTCATGT
CTCAAGGGTCATAAtgaccatggtaattgtttgaatacgaggcaagtgat
gttcgtgacgtaatttatgaaaaggtcttcCTGTAGTTTCTTTTCCTACA
GAATCAGACAAATTTCCACTCTCATCAATTCACTGAACTTTCAAAATATC
ATTTAGTTTACGGTATcgaaattaaaattaaacttgtacataatattttt
tctttNACAAATTTCCACTCTCATCAATTCTCTGAACTTTGAAAATATCA
TTTAGTTTTAAATTTTACGGTATcgaaattaaaattaaacttGTACATAA
TatgtaatattttttcttttgctaAATAATTTGttaatatatctctaatc
caataaaaattcaaaataaatctgctaataatatttctaaatatacattt
aaatgctatgagattaaaaattttcttttatacaTTTATTGAAATCTTAA
TTAAAAAatcatgtttaaaaaaattttataagaatctttGAGAATTAATT
TTATCGGGATTTTATCACATCATAAACTTGAGCTTGCATGCCTTATTTCC
TCTCTTTCTCTAATTTGTGTTTAATTCGAAGaaacttttcgatttttaat
GATCTAAAttcgggacgagatggagtttttacaagctcttatttgatttg
gttggtcgtcaatcagtaataaaacaattttgttactttttctaaagaac
gcgtcatttttgttacttcaaatgaccaatttaattattaaagtatctta
taaaaactccatctcatctgttaAATTCTTACATACCCAACCAGCTTCAG
CCACATTTAAAACACACATTTCAAATTCTGCTGTACAACTAAGATGCTCc
ttaagaaaatgagaaaatcatAAAAGAATGGAATTTATATAAATAGAAAT
ACATTTTTAATgtgaatttttataaaatacaatcaactctctctaattcg
aacctctactatttgaacgttttttttaattcgaacTACAACCAATATAT
CATGGCACATAACACCCCCCTCCACTCCGAACAATGTTGGAGGGAAATAA
ATATTGCTTGGCCGGTCCTTAGCTTGCCCCAACAACATTTTTTGGGGGGA
AGAGAAGGGGATGCTCATTTTTGTGCTTTTGTGCCAAAGGTTTTGTCAAT
GTATTTGTCCTCTCAGCTagaaattagtataaaatactttctgtaattcg
aatcttcctCTAATTTGAAGAACATCTTTGGGCCCTtgaatgtcgaatta
gagagagtcaactaattgctccatttttttctaaaacgcattttgtttac
tttgagaatcgaaaattttttgattaaacaaaaataatttccgtttattt
taacttttctaaattcaaaaggatgataaattttcaggattttacTCAAT
TTAAAATCGTCTACTTTTTTACACATTAcctacagtgtgtcccaaaaaaa
ggacGCATTTTTTATATTAAATAAAATCCTCCTTGTTTatgccaaatttt
atgacttgtatTACTTgatatttcaatctcaaaaagcTTTCCAATAATCT
TGGGtattgaatatctattgattgaacagagaattgctaacttatttcaa
ttattttaagtCCAGTTTGGATAATGAGTTtcgaggattttactttatac
agaaatttgtccgctttttcCGGGACACGCTATACATGTAACATTTATTC
AATCTGATGAATATGCATTTTTCTTAGATGTAAAGCTTTCAGCAAGTGAC
ATAATAATAGCTGGAAGATCTTCAATCATTTTTTCAGGATATTTCATAAT
ATTCGTATCACTCAGTGCTCCAGTGTATATAAATCCATTATAACTCATTA
TTGAAATCGACGACCCGATGCTATCCTTACCGGGTGGCCAGAAGACTAAA
GAACTTAATTTATTTCCAGCAAGCATTAACTCGTGGGATGGCCCTTGGAC
ATTAGATACAATCATTACAGCATTACTAGCAGATGATCGAATGATCTCCT
GCATAGCACAGTTCGGTGTCATTTCAGCTAAAAGACGCAACCCAATTCGC
ATACTCATTCCTTCTAAAGAATCTTTCCTAGACTTCATTCGATCGtgaat
ttccaaaatatttctgaTCGAATCGGCGCTTGATGTGGGTAGCGGAAGCA
TAGTAATGTTTATTTTATTACTGAATTCTTTAGCCTGTTCAAGTGAAAGC
CTGGTATCTAACGGTATACACGTGATCAAATTATGAGGCGCCTTTTCGTT
CTTTTTTCGGAAAAAGTTATGTAGGCTAGTTGCTATGCAACCCAAAATGA
CATCATTGATCGTGACATTTAAGTTTCGTTTGATAATTTTGATAAGTTCC
AGATTAATTGGTCGAGCGTAAATATAACGTTTCTTTCCGGATAAGGAGGC
TTCCGGACAGTTCAACGATGTCGGGCGCGTCCATTGCGGAGCTAAGGTTT
TCGCCACATTGTAAGGGTagtaaattgaagattttaGATAAATCATTGAT
TTTTGTGTAAAGGAAATCTGATGTTCTGGGCCAGCTAAGTATCCATTATT
GTTGGAATCGTCACACAAATGGTTTATGAGAAAATACATAAGAGAAGTTC
CATCAGCTAAACAATGTGAAATCCGTACTATAATTCCGGATTGTATGAAC
CCATCTGTATTTCTACAATGAACTACAACAAATTCCCATGGCGATTTATT
GTCTGAGGATCGAAGTGGACGTTCAGCAAGTTTGGATATTAAGTCTTGTA
ACTGATTTTTAGATCGGCATGGATTTTCACTCCATTCGTAAACATGATCT
TTAAGTTTGAAATTCGTTTCTTCCAACCAGTAATAATTTAAGTATCCTGT
ATGAACATATTCAGTCACTCTTGGATATAATAACTTCCCTGTTTTTGTAT
TACGTGCTTTAACTAATTTTCGGTCCATTAAACCCTGGAATTTTTTAATA
CCCAATTTCCCTTCAAGCATTAATAGACAGTTGATGTCGGTACGATTTCG
GGGCGTATCAGTTAACCAGGGCGTTTCCTCAGTTTTGAAATGTAAGGCTC
TGTATAAGATTCGATAGACGATTTCTTCTAGTTTACGAGTTATGAGGATT
GTCATGCTGAATGGGAGCAAAGGAATTGTGGTGCAGATAATGATGGTCCA
TGACGTCACCAGAAAAATCAAGAATCCAAAACGACTGAGTAGTTTCAATA
TCATTGCTGCAGAATGTTGTTACTTTTTGTTCGTCTGAAAGATAGAATAG
ATCAAGGATTTATAAATCAAGATTTATTCAAAGTTGGAAAAGCTAGACAT
GGTTCATCCTGTATCAGACTCTCTCATTCCAACATCCAACAAAAATTGAT
CATCGAACACATCACAGtacaaattgaaaaatcataaaacgTAAATGTTT
AAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006712XLOC_006712Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011963-exon-sc0000134-1491911889:405930..405952TCONS_00011963-exon-sc0000134-1491911889:405930..405952Clytia hemisphaericaexon
TCONS_00011963-exon-sc0000134-1510915933:405930..405952TCONS_00011963-exon-sc0000134-1510915933:405930..405952Clytia hemisphaericaexon
TCONS_00011963-exon-sc0000134-1575043694:405930..405952TCONS_00011963-exon-sc0000134-1575043694:405930..405952Clytia hemisphaericaexon
TCONS_00011963-exon-sc0000134-1491911889:408907..408967TCONS_00011963-exon-sc0000134-1491911889:408907..408967Clytia hemisphaericaexon
TCONS_00011963-exon-sc0000134-1510915933:408907..408967TCONS_00011963-exon-sc0000134-1510915933:408907..408967Clytia hemisphaericaexon
TCONS_00011963-exon-sc0000134-1575043694:408907..408967TCONS_00011963-exon-sc0000134-1575043694:408907..408967Clytia hemisphaericaexon
TCONS_00011963-exon-sc0000134-1491911889:411743..411963TCONS_00011963-exon-sc0000134-1491911889:411743..411963Clytia hemisphaericaexon
TCONS_00011963-exon-sc0000134-1510915933:411743..411963TCONS_00011963-exon-sc0000134-1510915933:411743..411963Clytia hemisphaericaexon
TCONS_00011963-exon-sc0000134-1575043694:411743..411963TCONS_00011963-exon-sc0000134-1575043694:411743..411963Clytia hemisphaericaexon
TCONS_00011963-exon-sc0000134-1491911889:413247..413351TCONS_00011963-exon-sc0000134-1491911889:413247..413351Clytia hemisphaericaexon
TCONS_00011963-exon-sc0000134-1510915933:413247..413351TCONS_00011963-exon-sc0000134-1510915933:413247..413351Clytia hemisphaericaexon
TCONS_00011963-exon-sc0000134-1575043694:413247..413351TCONS_00011963-exon-sc0000134-1575043694:413247..413351Clytia hemisphaericaexon
TCONS_00011963-exon-sc0000134-1491911889:413910..414074TCONS_00011963-exon-sc0000134-1491911889:413910..414074Clytia hemisphaericaexon
TCONS_00011963-exon-sc0000134-1510915933:413910..414074TCONS_00011963-exon-sc0000134-1510915933:413910..414074Clytia hemisphaericaexon
TCONS_00011963-exon-sc0000134-1575043694:413910..414074TCONS_00011963-exon-sc0000134-1575043694:413910..414074Clytia hemisphaericaexon
TCONS_00011963-exon-sc0000134-1491911889:414467..414544TCONS_00011963-exon-sc0000134-1491911889:414467..414544Clytia hemisphaericaexon
TCONS_00011963-exon-sc0000134-1510915933:414467..414544TCONS_00011963-exon-sc0000134-1510915933:414467..414544Clytia hemisphaericaexon
TCONS_00011963-exon-sc0000134-1575043694:414467..414544TCONS_00011963-exon-sc0000134-1575043694:414467..414544Clytia hemisphaericaexon
TCONS_00011963-exon-sc0000134-1491911889:415290..415364TCONS_00011963-exon-sc0000134-1491911889:415290..415364Clytia hemisphaericaexon
TCONS_00011963-exon-sc0000134-1510915933:415290..415364TCONS_00011963-exon-sc0000134-1510915933:415290..415364Clytia hemisphaericaexon
TCONS_00011963-exon-sc0000134-1575043694:415290..415364TCONS_00011963-exon-sc0000134-1575043694:415290..415364Clytia hemisphaericaexon
TCONS_00011963-exon-sc0000134-1491911889:415630..420182TCONS_00011963-exon-sc0000134-1491911889:415630..420182Clytia hemisphaericaexon
TCONS_00011963-exon-sc0000134-1510915933:415630..420182TCONS_00011963-exon-sc0000134-1510915933:415630..420182Clytia hemisphaericaexon
TCONS_00011963-exon-sc0000134-1575043694:415630..420182TCONS_00011963-exon-sc0000134-1575043694:415630..420182Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134supercontigsc0000134:405930..420182 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.265254	7.83583e-05	0.00459487	0.496315	0	0	0.383269	0	0.606624	0.664513	2.24796	0.728307	0	0.181278	0	0.234233	0	0	0.111556	0.130576	0	0.991419	1.36212e-09	0	0	0	0.00405892	0	0.588122	0.193007
Blast
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BLAST of TCONS_00011963 vs. Swiss-Prot (Human)
Match: TRAF4 (TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 3.148e-64
Identity = 133/408 (32.60%), Postives = 200/408 (49.02%), Query Frame = 3 
Query:  294 DQTKVFLDKAARRAVLGLMIKCDNAKRKCDWTGELSTIEDHLKTCPYADIMCPNEQCQDSFPRRALQNHLQSRCKFRILACQFC-----------------------KEKC-------------------------------VYKDIKTHMKQCKRVPLECINKCGVKDIPREEMGAHI-NECPLSVLPCPYSDIGCPYKGRKDVLDEHVRLTVNDHLAMAVAKV-----------RANESRSICTNGLFIWPIKNFRAQFEAAKLSDEELAIFSQPFYTSQYGYKLRIKAYLNGRDRGKGTHLSLYLIIMKGEYDALLEWPFNQKITFYLLDQGD----QRKHKVHQLSPNRSLPNVRAVFNKPSG------KENLGIGNPSFVSHEVIDAGDYVHDNTIYIKCEIE 1289
            D  K++ D      VLGL I+C +++  C W+G L  ++ HL TC +  I CPN +C     RR L  HLQ  C  R L C+FC                       + KC                               V+  I++H  QC R+P+ C N+CGV  + RE++  H+ + C  +++ CP+ D GC ++  K  +  HV  +V  HLAM  A V           R  E  S+ ++G+ IW I ++  + + AK +   L  FS  FYT +YGYKL++ A+LNG   G+GTHLSLY+ ++ G +D LLEWPF +++TF LLDQ D    + +H      P+ +  N    F KP        + +LG G P F+SH+ I   +YV D+ ++I+  +E
Sbjct:   62 DYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPN-RCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGMCPQESVYCENKCGARMMRRLLAQHATSECPKRTQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDSCNTALVLCPFKDSGCKHRCPKLAMARHVEESVKPHLAMMCALVSRQRQELQELRRELEELSVGSDGVLIWKIGSYGRRLQEAK-AKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPFARRVTFSLLDQSDPGLAKPQHVTETFHPDPNWKN----FQKPGTWRGSLDESSLGFGYPKFISHQDIRKRNYVRDDAVFIRAAVE 463

HSP 2 Score: 46.595 bits (109), Expect = 3.148e-64
Identity = 18/46 (39.13%), Postives = 26/46 (56.52%), Query Frame = 1 
Query:  160 LGGYDADFVNGLPTEYECPICQMAFKDPVQLEECGHRFCQSCLNEI 297
            + G+D  F+        CP+C    ++PVQ+  CGHRFC +CL E 
Sbjct:    1 MPGFDYKFLEKPKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEF 46
The following BLAST results are available for this feature:
BLAST of TCONS_00011963 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF43.148e-6432.60TNF receptor-associated factor 4 OS=Homo sapiens G... [more]
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