TCONS_00011952 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011952
Unique NameTCONS_00011952
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2128

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011952 ID=TCONS_00011952|Name=TCONS_00011952|organism=Clytia hemisphaerica|type=transcript|length=2128bp
CACAGAGGaggtcaacaacaacaacaatcttCAGTTTAACCAATCACTCT
TTTAGAAAATAAACATAATATAAAACACCAAAATGGTTTCCATCAAGACA
TCTTTGTTGTTGATTGTCGTATTCTGTTTGACATGGTTCGTACAAGATAC
TATAGGAGCATCGTGTGAGTTCAAGAAATCGAGTAATGGAACAGTTTCAG
GATCTTGTGGTGAATGCGTCGGCTATGATATCGAGTGCTTCTATTGCGAT
TCAACGAAGAAATGTGAAAAGCGTACGTCCGTGATCGTTAATAAAGACCA
ATGCTCAGGCAAATGGTATACCTACAGTCAATGCACAATTCCTGGTGTTG
TGTTGATTGTGATCGCACCACTGGCAGCAGTTCTTCTCCTGGTCTTCCTC
TGTTGTTGTGTGTATTGTATTTGTTGCCGCGATTGTTGTCGTGAGCGAAG
CCAAAGAAAATGGGCCAAAGAAGATTCGAAACGTGAAAACAGGAAGAACG
AGAGAGATGCCAAACATGCTGCAAGAGATGAAGAGCGTAAATTGAAACAC
GACCAGATTCGTGCAAAATATGGTCTCTTTAAAGACGATTCAAACAAATA
TCAAAAGTTCGATACTGATCCATAAAGCAGCCTCGTTTGCATGCGCTGAC
AGTAtattataattatttttctcactATTTTTTATAATCACGCATCACAT
GCACGTATTTTGGGGAGTTTTTTTGTCGTAAATTATTCCGCTTCTTTGTA
TACTGGGATgtctatacacgttttttttataagaacatccaaaatttgca
tgtaactttttgaattttaagcctaaaaatgttcttaacatgttcttatt
ttagccattttttgagtctttttgtccattttcttcagaaattgggtgtt
ttagagtccgcgaagccttaaaatgttcttaactttttcttagcattttg
gcaaTCAAAGCCTTGtgttatagtttgttcttataaaaaataacgtGTAT
TCGATATATCCTTCAATGTATCTAATGCTTTGAAGAAAATCATCAATTGA
TagtcatgacgtaatcttttagacggtcgtttttgtgtttttccatGCAA
AAGATAGTATCATGTTACAATTAAGACGTCATTTTATATGACTAATACCT
TTTTCCTTATGCTTAGAAAAACCTCAAACTGTCGCTCAATTATGATTTCT
CTTGTCAATAGAATTCCATTTAATCAATGATATACATTATTGTAATGTCT
TCAACATCACAccatggacccaacagctgattggttgtggAGTgggacgt
aaaatcagtcaatacatcacTTGCAactaatcagctgttgggtccgtgat
gtaatgttagaagacattacaatggtgcatatcatatagcgcccattttt
ctttcaaaacctAATACATAAAATTACTTTAGGAGTACGATGAAGTCTTT
CTTGGAATATCCATGCctcttttcagctttttttggGCCTTACTGTATTA
AATATTATTGAAGTCTTCatctaaaaacaattatatattttgtttattGT
TCAGGTTTATATAATGATTGATTGGTATTTTTTAATTGTTCACACGTTCG
GTACGATCTATTTAGCACGCATCATTAGTTAGTAGTAGTAGTATATTATT
ATCTtgctcttatttttaaaaaaatattcgagaatcatttttcattatat
ttttgtGCATCGGGAGTCTacgatgtttttttttgtcgtcgATTTTAGAC
TTGCTTTCAGGAAAAATCCATTCATGGGGTGGACGATTTATAGACATATA
TATTTCAATTTGTCAACCCCTTGACACGAATCAAATCTACCCTGGACATT
TTTCAGAATTCTTTCGTTATCTTTCACACTCTATCAATGTTTTTCTTGAA
GAGTGCTTTTTCTGTCACctttgacttcaaaaatgaaaaaataaacccta
gcttaaattctttgaaaaaagtcttttctttgtttcattGTGTATTATAC
ggaatattatatatttttgtaaaactttttcTAATGATGTATAATCTGTT
TTTTTGTTACTCAACGATGGTATTTTAGGGAATGATTTTcttcgaaatat
ttttgattgttCATGATTTTCGTTAAAT
Run BLAST on NCBI

transcript from alignment at sc0000134:306955..312587+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011952 ID=TCONS_00011952|Name=TCONS_00011952|organism=Clytia hemisphaerica|type=transcript|length=5633bp|location=Sequence derived from alignment at sc0000134:306955..312587+ (Clytia hemisphaerica)
CACAGAGGaggtcaacaacaacaacaatcttCAGTTTAACCAATCACTCT
TTTAGAAAATAAACATAATATAAAACACCAAAATGGTTTCCATCAAGACA
TCTTTGTTGTTGATTGTCGTATTCTGTTTGACATGGTTCGTACAAGATAC
TATAGGTAAGTATTACTTGGTTAAAATATTTGATCATACTTCTGCTAGTT
TCAAATTATATTTAGCTACGGCTTTCTATAGAATACAAGGCTGACTAGGT
ACAATAAAGTACAAGCTAGAAGACCTCCGTTGGTCCCTTTTTCTTATCAT
GCAGTAAATAGGCTTCAATTCCGAGTTTGATTATATTTTACACTTGTATA
AATGCCCAAGTACGGAGTTCTGAGAATCTAGGTTTTCAGGAAAGGCCAAT
TTTATTGCCctgtaaaagattttcaaagatcgaaatattttgattgtttt
cttcAGGAGCATCGTGTGAGTTCAAGAAATCGAGTAATGGAACAGTTTCA
GGATCTTGTGGTGAATGCGTCGGCTATGATATCGAGGTAtactattttct
tttgtaataGTATATATCTCTTTCATTGCAAATTGATGATCTGTAAAGTT
CGCTAAGCTTGCTAAGTTAATGTTCACAATATTTGATTAAGGAATAAATC
ATTACCACCCCCTGTTTTAGTATTCCGTTCAGGAATTATTTAgctgatga
aaataaaattacagAGAAAATTCTCAATATAGATAGGAACTCGAATATTT
TTACgcttaaattttaaatttgtaaTGTCTTTTCAAATGGAGATAAGTTT
CCATTTGTAGTTTTCTAATGGGGACCAAATTTTATGCTAATAATGTATAT
AGTGGAGTGTCCATAACTCAGACACGCACGGAGAACAcaatttttttcga
gttatggagacttgtTTATTAGGGTTTCTTAACTAAAGAGATCAGAAAAT
TTGTTCTAGTTAAGGAAACATTCCAGTAATAGAGGTTCAAGCTccgggtt
cgagttatggagactccattgtATTATTACTTATATCCTTTATTTTCTCG
TTTCGCAGTGCTTCTATTGCGATTCAACGAAGAAATGTGAAAAGCGTACG
TCCGTGATCGTTAATAAAGACCAATGCTCAGGCAAATGGTATACCTACAG
TCAATGCACAAGTATGTGTTTAAATTCTATGTACTGTTCAGATCTTTTCT
TCGGTGATATCTTGTATTGTTATAGGCAAGTTGTGGGAAAATACAAAGTC
GTCATATAGCTGTTGAGAAGAAATTTAAGTGGTGGTGTTGAGCTTCTCAA
GAATTTTCTAGCCCGTGCGGACAAATCCCCCGTCCgacttttatttaatt
ttccctGCGAAACCGTTTATTATAGGCTATAATATTATCTACTATATCTA
CTATTAACTCATCTTAATTCTTTCACTTTTAGTTCCTGGTGTTGTGTTGA
TTGTGATCGCACCACTGGCAGCAGTTCTTCTCCTGGTCTTCCTCTGTTGT
TGTGTGTATTGTATTTGTTGCCGCGATTGTTGTCGTGAGCGAAGCCAAAG
AAAGTAAGTATCCTCAAAGGTAGAAGAGGAGAAGCGGTCAGAAatataac
acccctgtatcagtgacccggtaGCGTTAGAACTCACCGGGGTAACtatg
aaaatggtaaaatttcGCCAGGTGATTTTGAGGtcttgaaatttcatttt
tggtgagaattttctcatcaattttcacatcgattttcACCGGGTCAAGG
ACAGTGAgatttttcaattgaaaaaaattatatatagtaatttttgatga
tttttgacaGGGTTGACCTACCTACATAATGTTATTAATGTCCTGGGCAT
AAATTTAAATTTCCAAAGCAGAGTCAGAGGCAGAGTTAGAAAATTTCGGT
TAATTTTGAACCGGGCTCACTCATTATCCCACTGGGGCTTAAAATTAGAC
CATTTTTGGCAATTCTTTTCATCGGGTCACTGATGAACAGGGCCCgattg
ttcaaaagtggattagcgGCCGATTAGCTTAAGTCTGGATTAAATCACGA
TTAGCGCcgattaacgaaaatttgtctGTTGTTCAAAAAATATCACGATT
AAAAAAGCGATTAACTTAGACTTAAACACCCCAAAACTTAATCCTGCTCG
GGAGGTGGATTAAGGAAAGATTAAGCTTAAAACAAAGTGAGAAATGGCCG
CCATGAACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaatttcaaat
ttttcattttcccccatactttaaaaaaagggccaaaatcagaatccccc
cccctttataaaggggggggggaggacactatgacaGATTGAAAGATTTT
ATGAATGACAACACTTTTTGATGAGGACATTCGAATGCGCTTTCGCTTTT
CATGACAAGGCATTGTGTTTTTAACCAATCTTCTCAGACAAGATCTGCAA
AGACCTACACAGGGGTGTACAAACTATACTTTGTTAAGTTTCTTGATTAT
TTTAGCACAAAGCAAATAGCTAAACTGTCTGAAGCTCAAATCTGTTTTTG
TTGAAGAAAATACACAGTaatgaattttaaataaataggATTTGGATTTT
AAACTCCACTTTCTTGTTTCATCTTTTGTGCAGATGGGCCAAAGAAGATT
CGAAACGTGAAAACAGGAAGAACGAGAGAGATGCCAAACATGCTGCAAGG
TAAGACAATGgtcaaaaatggtaaaattagtAAAATTCAGATTGTGTata
ccattgcaatgtcttctgacaatacgtcattttttagaaaGGCTGATTGA
TGCATTGAATAGAAAAAAAGTAGGAAGGATACATATTTTTGTTACAATGG
TGCACATTTATGTGCATTTCTCGGCATAGTATCATCCCACAAACACTATT
TGTTCTTTCAAAGCTGGTTCACCACGTAGTTTTAACGTCTATCTAACGTT
CAAAACGATAcacaaacgttgaaacaatgatATAAATCAGCTGGGTTATT
AGTTATAACTGCTAGATACCGGCACTAAAAGGACACGTAAGGGTAGTTGG
GAAACTTTTCCAGAGAATAAGCCTGTTGGGTAGCTTTGTTTTAAGTGAAG
ACCCTCATAATACCATTCAAAATCTGTAATACTGTCTCTACTTTTCGTTT
TCCAGAGATGAAGAGCGTAAATTGAAACACGACCAGATTCGTGCAAAATA
TGGTAAGTCTTTTATTCTTTCTTTAAGTATATCTTGAAAACTGCCCAAAT
CGCCAGATTTGCTAGATTCCAGATTTTTCGTTGATTTTTGTGCTAGAATG
TTAAGtcgattaaatttcgcgtgCATTAATTTTCAATCCACTTAGTTATT
GTGCACGAATAATGCTTGTTTTAAATATACTAATGACATCATCATTAACG
CATACGTTAATTTCTTTTAATCCTCAGGTCTCTTTAAAGACGATTCAAAC
AAATATCAAAAGTTCGATACTGATCCATAAAGCAGCCTCGTTTGCATGCG
CTGACAGTAtattataattatttttctcactATTTTTTATAATCACGCAT
CACATGCACGTATTTTGGGGAGTTTTTTTGTCGTAAATTATTCCGCTTCT
TTGTATACTGGGATgtctatacacgttttttttataagaacatccaaaat
ttgcatgtaactttttgaattttaagcctaaaaatgttcttaacatgttc
ttattttagccattttttgagtctttttgtccattttcttcagaaattgg
gtgttttagagtccgcgaagccttaaaatgttcttaactttttcttagca
ttttggcaaTCAAAGCCTTGtgttatagtttgttcttataaaaaataacg
tGTATTCGATATATCCTTCAATGTATCTAATGCTTTGAAGAAAATCATCA
ATTGATagtcatgacgtaatcttttagacggtcgtttttgtgtttttcca
tGCAAAAGATAGTATCATGTTACAATTAAGACGTCATTTTATATGACTAA
TACCTTTTTCCTTATGCTTAGAAAAACCTCAAACTGTCGCTCAATTATGA
TTTCTCTTGTCAATAGAATTCCATTTAATCAATGATATACATTATTGTAA
TGTCTTCAACATCACAccatggacccaacagctgattggttgtggAGTgg
gacgtaaaatcagtcaatacatcacTTGCAactaatcagctgttgggtcc
gtgatgtaatgttagaagacattacaatggtgcatatcatatagcgccca
tttttctttcaaaacctAATACATAAAATTACTTTAGGAGTACGATGAAG
TCTTTCTTGGAATATCCATGCctcttttcagctttttttggGCCTTACTG
TATTAAATATTATTGAAGTCTTCatctaaaaacaattatatattttgttt
attGTTCAGGTTTATATAATGATTGATTGGTATTTTTTAATTGTTCACAC
GTTCGGTACGATCTATTTAGCACGCATCATTAGTTAGTAGTAGTAGTATA
TTATTATCTtgctcttatttttaaaaaaatattcgagaatcatttttcat
tatatttttgtGCATCGGGAGTCTacgatgtttttttttgtcgtcgATTT
TAGACTTGCTTTCAGGAAAAATCCATTCATGGGGTGGACGATTTATAGAC
ATATATATTTCAATTTGTCAACCCCTTGACACGAATCAAATCTACCCTGG
ACATTTTTCAGAATTCTTTCGTTATCTTTCACACTCTATCAATGTTTTTC
TTGAAGAGTGCTTTTTCTGTCACctttgacttcaaaaatgaaaaaataaa
ccctagcttaaattctttgaaaaaagtcttttctttgtttcattGTGTAT
TATACggaatattatatatttttgtaaaactttttcTAATGATGTATAAT
CTGTTTTTTTGTTACTCAACGATGGTATTTTAGGGAATGATTTTcttcga
aatatttttgattgttCATGATTTTCGTTAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006707XLOC_006707Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011952-exon-sc0000134-1491911889:306955..307109TCONS_00011952-exon-sc0000134-1491911889:306955..307109Clytia hemisphaericaexon
TCONS_00011952-exon-sc0000134-1510915933:306955..307109TCONS_00011952-exon-sc0000134-1510915933:306955..307109Clytia hemisphaericaexon
TCONS_00011952-exon-sc0000134-1575043694:306955..307109TCONS_00011952-exon-sc0000134-1575043694:306955..307109Clytia hemisphaericaexon
TCONS_00011952-exon-sc0000134-1491911889:307411..307490TCONS_00011952-exon-sc0000134-1491911889:307411..307490Clytia hemisphaericaexon
TCONS_00011952-exon-sc0000134-1510915933:307411..307490TCONS_00011952-exon-sc0000134-1510915933:307411..307490Clytia hemisphaericaexon
TCONS_00011952-exon-sc0000134-1575043694:307411..307490TCONS_00011952-exon-sc0000134-1575043694:307411..307490Clytia hemisphaericaexon
TCONS_00011952-exon-sc0000134-1491911889:308013..308115TCONS_00011952-exon-sc0000134-1491911889:308013..308115Clytia hemisphaericaexon
TCONS_00011952-exon-sc0000134-1510915933:308013..308115TCONS_00011952-exon-sc0000134-1510915933:308013..308115Clytia hemisphaericaexon
TCONS_00011952-exon-sc0000134-1575043694:308013..308115TCONS_00011952-exon-sc0000134-1575043694:308013..308115Clytia hemisphaericaexon
TCONS_00011952-exon-sc0000134-1491911889:308387..308507TCONS_00011952-exon-sc0000134-1491911889:308387..308507Clytia hemisphaericaexon
TCONS_00011952-exon-sc0000134-1510915933:308387..308507TCONS_00011952-exon-sc0000134-1510915933:308387..308507Clytia hemisphaericaexon
TCONS_00011952-exon-sc0000134-1575043694:308387..308507TCONS_00011952-exon-sc0000134-1575043694:308387..308507Clytia hemisphaericaexon
TCONS_00011952-exon-sc0000134-1491911889:310238..310303TCONS_00011952-exon-sc0000134-1491911889:310238..310303Clytia hemisphaericaexon
TCONS_00011952-exon-sc0000134-1510915933:310238..310303TCONS_00011952-exon-sc0000134-1510915933:310238..310303Clytia hemisphaericaexon
TCONS_00011952-exon-sc0000134-1575043694:310238..310303TCONS_00011952-exon-sc0000134-1575043694:310238..310303Clytia hemisphaericaexon
TCONS_00011952-exon-sc0000134-1491911889:310760..310806TCONS_00011952-exon-sc0000134-1491911889:310760..310806Clytia hemisphaericaexon
TCONS_00011952-exon-sc0000134-1510915933:310760..310806TCONS_00011952-exon-sc0000134-1510915933:310760..310806Clytia hemisphaericaexon
TCONS_00011952-exon-sc0000134-1575043694:310760..310806TCONS_00011952-exon-sc0000134-1575043694:310760..310806Clytia hemisphaericaexon
TCONS_00011952-exon-sc0000134-1491911889:311032..312587TCONS_00011952-exon-sc0000134-1491911889:311032..312587Clytia hemisphaericaexon
TCONS_00011952-exon-sc0000134-1510915933:311032..312587TCONS_00011952-exon-sc0000134-1510915933:311032..312587Clytia hemisphaericaexon
TCONS_00011952-exon-sc0000134-1575043694:311032..312587TCONS_00011952-exon-sc0000134-1575043694:311032..312587Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134supercontigsc0000134:306955..312587 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.72914	8.78581	5.65876	6.59049	5.94896	4.21195	13.8903	13.0086	16.509	13.3352	12.666	12.0441	15.0902	15.2459	10.5094	8.16568	8.47541	8.86408	13.4187	14.1276	9.90765	10.4739	7.13533	7.91543	43.816	32.8008	12.1705	9.10266	12.1359	11.7899
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011952 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top