TCONS_00011921 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011921
Unique NameTCONS_00011921
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011921 ID=TCONS_00011921|Name=TCONS_00011921|organism=Clytia hemisphaerica|type=transcript|length=1472bp
cttttaagatttttagatttctagaaaattagttttaaagagaaaaCTTT
TTTGTGACACACCCGGTATTTTGTTGTGACCATAAATTTTATCATATACG
TgtcattattaaatatttcatccAGTTTCATCAGTTCATGTTCCAGCATT
GTACATTTCATCATCATACGTTTAACATTAAACATTTTAACATCATTTGT
TATCTCATTATGCACTTTAACATTTTACCTTCAACAATACCCTTGTCTTT
GTGACCCATTGCGATCCACTCCATTGGCCACTAGATTgaaaaatccttcc
aaagattgCCCATTTTTTACACCACCACAAGATGAATAAGCACACTTAAC
CTTCCTCCTGACCTTACCCCTGATTTTGTTCCTTAATTCTTTGGTTGTTT
TTAGTATTCATAATGTCTGATCATGCTAATGTTGTAAAAAATCTGCACAA
AAGTTTGAGAAATGAATTCAAACATGGAATATCTGAAGATGAAATTTGGG
ATAAACACATCCAGAATAAAGAATCCCTCCAAAATTATGCAGAATCGATG
TGTTCGTTGGCAAAGAATTCATGGAGAATGGATAATAATAATAGAATCAA
ATGGTGTTTAGCAACGATTTCATATTATTATGAAGGTGGTCTACTCAAAG
TCTTGagaaaagaattaaaaacaaagaagtttGAAGATTTACGAAGTAAT
AATATTGAAGAGTCTCCTGAGGAGCACCAAAggattaattttgagattga
aaatacagtttttgaaattgaagacACAAAGAAATTACTACTAGATGTTG
GGAGTTGTTATAATCCTTTCGGAGAAACTGTAGAATACACCAGTATTGCA
ATCGATATTGCACCTGCCAATGAGGATGTCATATTTTGTGAtttcttgaa
tttgaatttttctgcTGTGAATGAAGCATACACTCAGATAGATGAcatta
aaacaaatttaaagtCTGGAAGTCTGTTGACAAATACTTtcaatgttgtt
gttttttctttgttacTGTCATATTTCCCATCTCCCAAACAGAGGCTCAA
GTGTTGCGTGAATGCCTCCTATGCATTGAAAATTAATGGACTCATATTAA
TTATAACACCTGATTCCTCACATCAAAACAGGCACCAAGGTATGATGAAG
TCCTGGAAAAATGCATTAGAGGAAATCGGTTTTGTGCGCTTCAAATACGA
AAAACTTGAACATTTACATTGTATGGCATACAGGAAAGTGAAAGAGTCGG
CTATTACTGAATCTTTGATGGATGCTTTATCAGGATCGTTCTACATACCA
CAAGATTTTCAAGAAGTTGATAATGAGAGTCAGTTGCAGAATTAAAGCTA
AAGACAATGGTTTTTTCTAGTCTAGACTTTATATGAATATTATatgtcaa
ttttaattttgtatgaaattattattaaacaAATTATTGtgatgattttt
taaattttattaaataaaaagC
Run BLAST on NCBI

transcript from alignment at sc0000134:59533..61004+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011921 ID=TCONS_00011921|Name=TCONS_00011921|organism=Clytia hemisphaerica|type=transcript|length=1472bp|location=Sequence derived from alignment at sc0000134:59533..61004+ (Clytia hemisphaerica)
cttttaagatttttagatttctagaaaattagttttaaagagaaaaCTTT
TTTGTGACACACCCGGTATTTTGTTGTGACCATAAATTTTATCATATACG
TgtcattattaaatatttcatccAGTTTCATCAGTTCATGTTCCAGCATT
GTACATTTCATCATCATACGTTTAACATTAAACATTTTAACATCATTTGT
TATCTCATTATGCACTTTAACATTTTACCTTCAACAATACCCTTGTCTTT
GTGACCCATTGCGATCCACTCCATTGGCCACTAGATTgaaaaatccttcc
aaagattgCCCATTTTTTACACCACCACAAGATGAATAAGCACACTTAAC
CTTCCTCCTGACCTTACCCCTGATTTTGTTCCTTAATTCTTTGGTTGTTT
TTAGTATTCATAATGTCTGATCATGCTAATGTTGTAAAAAATCTGCACAA
AAGTTTGAGAAATGAATTCAAACATGGAATATCTGAAGATGAAATTTGGG
ATAAACACATCCAGAATAAAGAATCCCTCCAAAATTATGCAGAATCGATG
TGTTCGTTGGCAAAGAATTCATGGAGAATGGATAATAATAATAGAATCAA
ATGGTGTTTAGCAACGATTTCATATTATTATGAAGGTGGTCTACTCAAAG
TCTTGagaaaagaattaaaaacaaagaagtttGAAGATTTACGAAGTAAT
AATATTGAAGAGTCTCCTGAGGAGCACCAAAggattaattttgagattga
aaatacagtttttgaaattgaagacACAAAGAAATTACTACTAGATGTTG
GGAGTTGTTATAATCCTTTCGGAGAAACTGTAGAATACACCAGTATTGCA
ATCGATATTGCACCTGCCAATGAGGATGTCATATTTTGTGAtttcttgaa
tttgaatttttctgcTGTGAATGAAGCATACACTCAGATAGATGAcatta
aaacaaatttaaagtCTGGAAGTCTGTTGACAAATACTTtcaatgttgtt
gttttttctttgttacTGTCATATTTCCCATCTCCCAAACAGAGGCTCAA
GTGTTGCGTGAATGCCTCCTATGCATTGAAAATTAATGGACTCATATTAA
TTATAACACCTGATTCCTCACATCAAAACAGGCACCAAGGTATGATGAAG
TCCTGGAAAAATGCATTAGAGGAAATCGGTTTTGTGCGCTTCAAATACGA
AAAACTTGAACATTTACATTGTATGGCATACAGGAAAGTGAAAGAGTCGG
CTATTACTGAATCTTTGATGGATGCTTTATCAGGATCGTTCTACATACCA
CAAGATTTTCAAGAAGTTGATAATGAGAGTCAGTTGCAGAATTAAAGCTA
AAGACAATGGTTTTTTCTAGTCTAGACTTTATATGAATATTATatgtcaa
ttttaattttgtatgaaattattattaaacaAATTATTGtgatgattttt
taaattttattaaataaaaagC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006699XLOC_006699Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011921-exon-sc0000134-1491911889:59533..61004TCONS_00011921-exon-sc0000134-1491911889:59533..61004Clytia hemisphaericaexon
TCONS_00011921-exon-sc0000134-1510915933:59533..61004TCONS_00011921-exon-sc0000134-1510915933:59533..61004Clytia hemisphaericaexon
TCONS_00011921-exon-sc0000134-1575043694:59533..61004TCONS_00011921-exon-sc0000134-1575043694:59533..61004Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134supercontigsc0000134:59533..61004 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.92098	3.00733	1.70972	1.46023	2.49606	1.87437	2.2588	3.1272	0.686289	0.897174	0	0.521887	0.825936	0.373023	1.48086	1.4011	1.78161	1.44806	1.03355	0	1.14431	0.834122	10.8397	9.53057	0	0.520259	1.10257	1.12324	4.63262	6.34089
Blast
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BLAST of TCONS_00011921 vs. Swiss-Prot (Human)
Match: BMT2 (Probable methyltransferase BMT2 homolog OS=Homo sapiens GN=BMT2 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 3.605e-63
Identity = 138/316 (43.67%), Postives = 180/316 (56.96%), Query Frame = 2 
Query:  425 ANVVKNLHKSLRNEFKHGISEDEIWDKHIQNKESLQNYAESMCSLAKNSW--RMDNNNRIKWCLATISYYYE-GGLLKVLRKE-----LKTKKFEDLRSNNIEESPEEHQRINFEIENTVFEIE----DTKKLLLDVGSCYNPFGETVEYTSIAIDIAPANEDVIFCDFLNLNFSAVNEAYTQ-IDDIKTNLKSG--SLLTNTFNVVVFSLLLSYFPSPKQRLKCCVNASYALKINGLILIITPDSSHQNRHQGMMKSWKNALEEIGFVRFKYEKLEHLHCMAYRKVKESAITESLMDALSGSFYIPQDFQEVDNE 1327
            + VVK++H+ LR +++     D+IW +H +++E+L  YA +M +LA N W    +   RI+WC +    Y++ GG  K L K+     L TK    L  N  E S  E    N    N  F  E      K  LLDVGSC+NPF +  E+ ++ IDI PA E V  CDFLNL      +     ID     LK+   SL    F+VVVFSLLLSYFPSP QR  CC  A   L +NGL+LIITPDSSHQNRH  MMKSWK A+E +GF RFKY K  H+H MA+RK+     ++ +     G  YIPQDF  +++E
Sbjct:   37 SGVVKSVHRRLRKKYREVGDFDKIWREHCEDEETLCEYAVAMKNLADNHWAKTCEGEGRIEWCCSVCREYFQNGGKRKALEKDEKRAVLATKTTPAL--NMHESSQLEGHLTNLSFTNPEFITELLQASGKIRLLDVGSCFNPFLKFEEFLTVGIDIVPAVESVYKCDFLNLQLQQPLQLAQDAIDAFLKQLKNPIDSLPGELFHVVVFSLLLSYFPSPYQRWICCKKAHELLVLNGLLLIITPDSSHQNRHAMMMKSWKIAIESLGFKRFKYSKFSHMHLMAFRKISLKTTSDLVSRNYPGMLYIPQDFNSIEDE 350
The following BLAST results are available for this feature:
BLAST of TCONS_00011921 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BMT23.605e-6343.67Probable methyltransferase BMT2 homolog OS=Homo sa... [more]
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