TCONS_00011898 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011898
Unique NameTCONS_00011898
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length442

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011898 ID=TCONS_00011898|Name=TCONS_00011898|organism=Clytia hemisphaerica|type=transcript|length=442bp
ttttttttgaaagaagcCTTTGTAGTGTTAAAACTTTGCTTAAcaacaaa
cggcgctacatcactaGTGTACAAGCAAAAGCAGATCTAGCTCTCTCAAc
gcgggtaccactttcaaaaaaactccgatcaaaacaTTTTGCTTGGGATT
GAGAAACTGCCTCCAGGGTTTACATTAAGCCTAGTAATCTTACCGGGTCA
CTGACACAGGGGTGCTGAAAgcccaactggcacacaacgttgtttcaacg
tttatctaatgttcacaacgtccatataacgttagatgaacgttgaaaca
acgttgtgtgccagccggGAGGAAAAGAATGATCTGCTGACAAACTGAAT
AGTACTTATGCTTTATGTACATTTTTATTTATGACTAGTTATATCCATGC
TTACATGCAAGACAAAAACATTCtacaaatatttgattttta
Run BLAST on NCBI

transcript from alignment at sc0000133:213108..213549

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011898 ID=TCONS_00011898|Name=TCONS_00011898|organism=Clytia hemisphaerica|type=transcript|length=442bp|location=Sequence derived from alignment at sc0000133:213108..213549 (Clytia hemisphaerica)
taaaaatcaaatatttgtaGAATGTTTTTGTCTTGCATGTAAGCATGGAT
ATAACTAGTCATAAATAAAAATGTACATAAAGCATAAGTACTATTCAGTT
TGTCAGCAGATCATTCTTTTCCTCccggctggcacacaacgttgtttcaa
cgttcatctaacgttatatggacgttgtgaacattagataaacgttgaaa
caacgttgtgtgccagttgggcTTTCAGCACCCCTGTGTCAGTGACCCGG
TAAGATTACTAGGCTTAATGTAAACCCTGGAGGCAGTTTCTCAATCCCAA
GCAAAAtgttttgatcggagtttttttgaaagtggtacccgcgTTGAGAG
AGCTAGATCTGCTTTTGCTTGTACACtagtgatgtagcgccgtttgttgT
TAAGCAAAGTTTTAACACTACAAAGgcttctttcaaaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006683XLOC_006683Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011898-exon-sc0000133-1491911889:213108..213549TCONS_00011898-exon-sc0000133-1491911889:213108..213549Clytia hemisphaericaexon
TCONS_00011898-exon-sc0000133-1510915933:213108..213549TCONS_00011898-exon-sc0000133-1510915933:213108..213549Clytia hemisphaericaexon
TCONS_00011898-exon-sc0000133-1575043694:213108..213549TCONS_00011898-exon-sc0000133-1575043694:213108..213549Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000133supercontigsc0000133:213108..213549 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.7106	3.0671	4.37124	4.40578	49.137	37.338	31.8364	38.2522	14.406	21.0304	12.6905	14.3617	6.20668	7.71893	2.40275	2.93609	3.24497	3.98754	5.9933	8.33787	4.07692	4.65974	4.29185	3.57884	8.26172	7.50264	4.82811	7.82536	1.51301	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011898 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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