TCONS_00011892 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011892
Unique NameTCONS_00011892
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length459

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011892 ID=TCONS_00011892|Name=TCONS_00011892|organism=Clytia hemisphaerica|type=transcript|length=459bp
gctgataagtggtaATTTAACAGGCTCCATATTTTGGGGTGGTAGGAAAT
CCATGCCACTAAGTCCAGttcctttttggagaaaaacaaacagaaagcAT
GACttaatttctttccaaatttgggaggtattttcatgtttttatcatAG
TTTCATAAATTTTAATGAGAATATAATCCATTGCTATGGtgtttttatat
gatttttgaAACGAAAAGTGAAAAGATTTCATATTATGTTGGATTCAGCT
TCAGCGCCATTAAGATCATGTATCAGATAGCAAAATTCCGTCAGACGTAT
AGACCCTAGTCTAGTATTACGCTAACACAGCGTTCGCACCGTCTTTTCTC
GATTATAATATCCCCGTTTCGACTTACTGTATTTCCTCGATTTGTGAGTA
CAAAAACACATTCTATCGATGAAAATCTACGAGAGGTTTTGTGAGCTTTT
GTACAGAAG
Run BLAST on NCBI

transcript from alignment at sc0000133:76363..76821

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011892 ID=TCONS_00011892|Name=TCONS_00011892|organism=Clytia hemisphaerica|type=transcript|length=459bp|location=Sequence derived from alignment at sc0000133:76363..76821 (Clytia hemisphaerica)
CTTCTGTACAAAAGCTCACAAAACCTCTCGTAGATTTTCATCGATAGAAT
GTGTTTTTGTACTCACAAATCGAGGAAATACAGTAAGTCGAAACGGGGAT
ATTATAATCGAGAAAAGACGGTGCGAACGCTGTGTTAGCGTAATACTAGA
CTAGGGTCTATACGTCTGACGGAATTTTGCTATCTGATACATGATCTTAA
TGGCGCTGAAGCTGAATCCAACATAATATGAAATCTTTTCACTTTTCGTT
tcaaaaatcatataaaaacaCCATAGCAATGGATTATATTCTCATTAAAA
TTTATGAAACTatgataaaaacatgaaaatacctcccaaatttggaaaga
aattaaGTCATgctttctgtttgtttttctccaaaaaggaaCTGGACTTA
GTGGCATGGATTTCCTACCACCCCAAAATATGGAGCCTGTTAAATtacca
cttatcagc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006677XLOC_006677Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011892-exon-sc0000133-1491911889:76363..76821TCONS_00011892-exon-sc0000133-1491911889:76363..76821Clytia hemisphaericaexon
TCONS_00011892-exon-sc0000133-1510915933:76363..76821TCONS_00011892-exon-sc0000133-1510915933:76363..76821Clytia hemisphaericaexon
TCONS_00011892-exon-sc0000133-1575043694:76363..76821TCONS_00011892-exon-sc0000133-1575043694:76363..76821Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000133supercontigsc0000133:76363..76821 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.141911	0.138386	0	0	0.191375	0.151227	0.912245	0.854032	0.119586	1.03688	1.00642	0.47256	0.660664	0.980151	0.322327	0.605336	0.53266	0.109192	0.150855	0	0.274415	0.602325	0	0	0.152364	1.35981	0.194588	0	0.15751	0.320956
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011892 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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