TCONS_00011890 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011890
Unique NameTCONS_00011890
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length443

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011890 ID=TCONS_00011890|Name=TCONS_00011890|organism=Clytia hemisphaerica|type=transcript|length=443bp
GCCTTTTTCTGAAGAAACGTGCCACATGACGTTACCTCTTTAGAAAGTGA
AATGtctctatcaaaattaaaacGTATCTTTTTCTTTGGCGGTTCAGTAA
TTTTAGAGGAAGGAGAGGCAGTAGTGGTGGTGGTTGAATTTAAAGATGAT
GGAACGTTGTATAATTCTTTGgggataatttttctttctggtATGAAGTT
GAGCGGTTGTGTTGCAAGGTTTAAGACAGGCTGATGTGGTGAAGTAGTTG
AAGACGAAATTGAAGACAAAGTTGAAGACGAAGTTGGAAAtataaataaa
gatttcttcttttgttgttgttgggaAATTGATGAAAGTTGTGGTGGTTG
AGTGGCATGATGACATTTACTTGACGACGATGGCACCACAGAAacactaa
aaaataagaaataaaaaatttggtttcatATTGTTCAAAGTAT
Run BLAST on NCBI

transcript from alignment at sc0000133:29423..29865

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011890 ID=TCONS_00011890|Name=TCONS_00011890|organism=Clytia hemisphaerica|type=transcript|length=443bp|location=Sequence derived from alignment at sc0000133:29423..29865 (Clytia hemisphaerica)
ATACTTTGAACAATatgaaaccaaattttttatttcttattttttagtgt
TTCTGTGGTGCCATCGTCGTCAAGTAAATGTCATCATGCCACTCAACCAC
CACAACTTTCATCAATTtcccaacaacaacaaaagaagaaatctttattt
ataTTTCCAACTTCGTCTTCAACTTTGTCTTCAATTTCGTCTTCAACTAC
TTCACCACATCAGCCTGTCTTAAACCTTGCAACACAACCGCTCAACTTCA
TaccagaaagaaaaattatcccCAAAGAATTATACAACGTTCCATCATCT
TTAAATTCAACCACCACCACTACTGCCTCTCCTTCCTCTAAAATTACTGA
ACCGCCAAAGAAAAAGATACgttttaattttgatagagaCATTTCACTTT
CTAAAGAGGTAACGTCATGTGGCACGTTTCTTCAGAAAAAGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006675XLOC_006675Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011890-exon-sc0000133-1491911889:29423..29865TCONS_00011890-exon-sc0000133-1491911889:29423..29865Clytia hemisphaericaexon
TCONS_00011890-exon-sc0000133-1510915933:29423..29865TCONS_00011890-exon-sc0000133-1510915933:29423..29865Clytia hemisphaericaexon
TCONS_00011890-exon-sc0000133-1575043694:29423..29865TCONS_00011890-exon-sc0000133-1575043694:29423..29865Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000133supercontigsc0000133:29423..29865 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.935853	0.295696	0	0	0.672755	0.235781	0.650826	0.872656	0.274718	0.823527	0.341919	0.223465	0.215482	0.13477	0.191327	0.225791	0.539568	0.349974	0.336732	0.358435	1.12443	0.769027	0.376802	2.34502	1.57975	2.2594	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011890 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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