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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011847 ID=TCONS_00011847|Name=TCONS_00011847|organism=Clytia hemisphaerica|type=transcript|length=3325bp AAATGCACAGTACCAGGGTAAGGTAGCAAGATAGATATTTCTACTTCTCT GCAGATTTCTTGCAAGTAATAAGTCGTCATTCGTGCACTTTAGAAAAATG ACTTctttttgttttagaaaattagcaaaaataaCTATCCAAAATAAGTA ATTTAAAATATTATCTACTTGAAGAAATTATGTCAAAAGTGGCAGATTTT CAAGAGATCTCGAAAAGTTTTACCGATTACGAGAAGACTAAAGAAGAAAG ATGGGACCTTCCAAATCGTTGCTTAGTTCGTTATCGTATGGGTAATGGCG AGTGGAAATCGTTCTGGGAGCGGAGTCGTTTTCATGACAGCAGTGAAGAG AAAGGAGACGATTATCCTTGGAAGCAAGAAGATGAGAAACGTGTAGGTGA GGGTGAAGCACATGAGTACGCCATCCGAAGACTGGAACTCATTTTGAATC CAACAGATGACGAAGATAAGGACCCGTACACACGTCAACCGTTTAAAGGA TGTTTTCGAAGTAATAAATTTACTTATTATTTCGATACGTCAGCAATACA TTATCACTATGAATTACGACGAGTTGTGACGGTTAATTATCCAACTAAGA GGCGCGTTGAGGTGAAATATCCAGTGAATTTAATGCTCAATGATGAAGGA TCATTAATTTGTTGTCATCCGGTTGATGTGGCCGTTCTTCATGAGGGAAA AGAAGAATTCGAAACAGCTTTTGATTCCTCATCAAAGAAACCAAATATGG tcgtttttgaaaatattggtaCCTACAGCAATATCGGATATCAAAGATGG TTTTGGGGTGGCCGTAGGCTTAAAGATTTTCCAGAAGACTACAATTCAGA TGATCGAATGGAAGTCGAGATGTATTTTAATAATGCCCCAGCTTTCAGGG GCCGGGATTTGACTGATTTTCTCTCTGATCATCCCAATGTTTTCATACAT GCAAAGTATGGTTATTTCAAAGACGACACAGGTCTAAGGAGGACCAAAAT GTTCGATTCTCTCAATGAGAACCCCGGGTTCCCACTCTTCATCACACGTT TTACAGATGGTGATTGGAAAGTGTTGCATCGTCACATCTTGCAACTTGCT GAACAACAAATGGCTCAGAAAATGAAGAATGCAGGAATTTCAACTGAAGA GAAAGAAGAGGGTGATGATGAAAAGGAAAACATGAATGACGAACCTCTTG AGTAATAAACCGTTAAACTACTGTGGCTTGTTAGTGCCATGTGTAAACTa cttattcttgatatgcgtaagtcatttttctagcggaaacacccggaaaa atccgggatttgacccctctctgatactaaaaatagaaacacagaggttA AAATCCGGCTTTTTTTCAAGTGCTTCCGTTGGAAAATATGACATCTTACA TATCAAGAATACTTATAGATTCTTGTAAGTCGACTTACAAGTACTAAGTC GATACTTAATAGGGCTAAGTTGTAAGTCGACTTAGAACCTCTAAGTATaa gaagttttcttttttaataaatttcttaattactctgagtcgtaaaattt gttcatgaaattgacaatagatttattttaaagaatttatttgataacaa caagagcgacaaaaaaatcaaactttgaaagcaaaatttgaagaaaaaac attctACCGTGGTATcatagccatggtatatcatGGTATATCCATGTTTT TGcttacaggtatataataataagTTTTGTCGTTAGATTTGCcgtgttat tttttcaaaagcttctATGCCTGGTCATATAATTTCATGGATTTAGATTT CTACTGAGTTTGTACAATATTTTCCAGAGTATCTATCaagtttgaaaatg aaaatccttttttcttTGGAGGGGACTGATTTCATCTTTAGTTTacaggt tttatttttacataagtgttcccgtttcatatcagacacatatttcataa agacagtgtctgcctattgttatactatgctgatataagcagaaaatgtt tttattttcctctttcggatcaatcttgctccacatccgtgtcaattcaa tatatCAGAGGAAGTAAATGGAACTCTTATCTAAAGACAAAACCTTTTAA GTGATAATCCAAGGAATATATCTCACTACTGGGAATTCCACCAAGGCTTA TTTGACTTCGACATCGAGTGAcacaagatataagaaacaaataaaagaaa gaaaaaagaattcaaCATGTCTAACCGATTAGGACCATGTCCCGACAGCA TTACCAAGGCATTTACCGAACCTGACGATGATTCGTACGGTGATTACAAG ATGCGATGTTTGGTACGCTATCGTGTCGGGAATGAAGAATGGAAAATATT CTGGGAACGAAGTCGGAAATCTGAAGATGATATCAAACTGGAACGAGATT ATGAAAATTGGGAAGAAGATGATGATCTGAACTATAAAAGTTCAGATGGT ATCTCGTATATCTTACGAAGATTAGATTTAGTGTTGACAAAGCTTTCAGA AGAAACAGCTCATACTGATGCTGATGATAATAATGAAGtatggaaaaatt ttcaaggcTCTTCATTTCGCAGTGATAGGTATTCTTACGAGGTCGAAGCA TCTGTCATGCACTACCATTACGATGAAGGGAAAATTGTTTCAGTGAAACC CGATGATTATAAAACGATCATTTGCTCGAACCCAGGTCTCTTGCTGTTAA ACGGAGAAGATATGTTGACATTTTATAATCCAGTGGATGTTATGGCACTA AATgatgaagaaaagaaatttgaaaaacaagtcAATGAAGCTGGTAAAGT AGCCAGAATTGTCACATTGGAGTTAAACGGCCGTTCATTTAAATATGACT ATGAGTTTGAAAATTATTGGGATTTCCGACGTGAGTCTTATAATGCACCA AATCGAATGGAAGTTGaattatatttcaataaaacagtcagttttaggcC ATTCTTACAATTTGTCAAACGTCATCCTAACGTTATGTTACACATCAAAT ATGCTAACACCAGCAGTACCACTGGTTTCGACTTTTATAACAATAATCCT GGATATGCACTCTTTTTCACAAGTTTCACATCAGCTGATTGGAAAGTCTT TAATAAGTATTTGGCAAAACTTCATCAACTCAAACGAAACGAGTGGAAAG CGTATGTAGAGAATGTGCAGAAAATGTTGGAAGGAGCATCTCTGGAGACG CCTGGTGACCCGTTTGGTCTTCTGGAAGAAATTAAAGAGAAGGAGAAAGA AGCAACAAAACAGGATAataattaaccctttaagtgccgatgtcgtatat atacgacatgggctatataggaggg Run BLAST on NCBI protein sequence of TCONS_00011847-protein >TCONS_00011847-protein ID=TCONS_00011847-protein|Name=TCONS_00011847-protein|organism=Clytia hemisphaerica|type=polypeptide|length=352bp
MSNRLGPCPDSITKAFTEPDDDSYGDYKMRCLVRYRVGNEEWKIFWERSR KSEDDIKLERDYENWEEDDDLNYKSSDGISYILRRLDLVLTKLSEETAHT DADDNNEVWKNFQGSSFRSDRYSYEVEASVMHYHYDEGKIVSVKPDDYKT IICSNPGLLLLNGEDMLTFYNPVDVMALNDEEKKFEKQVNEAGKVARIVT LELNGRSFKYDYEFENYWDFRRESYNAPNRMEVELYFNKTVSFRPFLQFV KRHPNVMLHIKYANTSSTTGFDFYNNNPGYALFFTSFTSADWKVFNKYLA KLHQLKRNEWKAYVENVQKMLEGASLETPGDPFGLLEEIKEKEKEATKQD NN Run BLAST on NCBI transcript from alignment at sc0000133:58356..62533- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011847 ID=TCONS_00011847|Name=TCONS_00011847|organism=Clytia hemisphaerica|type=transcript|length=4178bp|location=Sequence derived from alignment at sc0000133:58356..62533- (Clytia hemisphaerica) AAATGCACAGTACCAGGGTAAGGTAGCAAGATAGATATTTCTACTTCTCT
GCAGATTTCTTGCAAGTAATAAGTCGTCATTCGTGCACTTTAGAAAAATG
ACTTCTTTTTGTTTTAGAAAATTAGCAAAAATAACTATCCAAAATAAGTA
ATTTAAAATATTATCTACTTGAAGAAATTATGTCAAAAGTGGCAGATTTT
CAAGAGATCTCGAAAAGTTTTACCGATTACGAGAAGACTAAAGAAGAAAG
ATGGGACCTTCCAAATCGTTGCTTAGTTCGTTATCGTATGGGTAATGGCG
AGTGGAAATCGTTCTGGGAGCGGAGTCGTTTTCATGACAGCAGTGAAGAG
AAAGGAGACGATTATCCTTGGAAGCAAGAAGATGAGAAACGTGTAGGTGA
GGGTGAAGCACATGAGTACGCCATCCGAAGACTGGAACTCATTTTGAATC
CAACAGATGACGAAGATAAGGACCCGTACACACGTCAACCGTTTAAAGGA
TGTTTTCGAAGTAATAAATTTACTTATTATTTCGATACGTCAGCAATACA
TTATCACTATGAATTACGACGAGTTGTGACGGTTAATTATCCAACTAAGA
GGCGCGTTGAGGTGAAATATCCAGTGAATTTAATGCTCAATGATGAAGGA
TCATTAATTTGTTGTCATCCGGTTGATGTGGCCGTTCTTCATGAGGGAAA
AGAAGAATTCGAAACAGCTTTTGATTCCTCATCAAAGAAACCAAATATGG
TCGTTTTTGAAAATATTGGTACCTACAGCAATATCGGATATCAAAGATGG
TTTTGGGGTGGCCGTAGGCTTAAAGATTTTCCAGAAGACTACAATTCAGA
TGATCGAATGGAAGTCGAGATGTATTTTAATAATGCCCCAGCTTTCAGGG
GCCGGGATTTGACTGATTTTCTCTCTGATCATCCCAATGTTTTCATACAT
GCAAAGTATGGTTATTTCAAAGACGACACAGGTCTAAGGAGGACCAAAAT
GTTCGATTCTCTCAATGAGAACCCCGGGTTCCCACTCTTCATCACACGTT
TTACAGATGGTGATTGGAAAGTGTTGCATCGTCACATCTTGCAACTTGCT
GAACAACAAATGGCTCAGAAAATGAAGAATGCAGGAATTTCAACTGAAGA
GAAAGAAGAGGGTGATGATGAAAAGGAAAACATGAATGACGAACCTCTTG
AGTAATAAACCGTTAAACTACTGTGGCTTGTTAGTGCCATGTGTAAACTA
CTTATTCTTGATATGCGTAAGTCATTTTTCTAGCGGAAACACCCGGAAAA
ATCCGGGATTTGACCCCTCTCTGATACTAAAAATAGAAACACAGAGGTTA
AAATCCGGCTTTTTTTCAAGTGCTTCCGTTGGAAAATATGACATCTTACA
TATCAAGAATACTTATAGATTCTTGTAAGTCGACTTACAAGTACTAAGTC
GATACTTAATAGGGCTAAGTTGTAAGTCGACTTAGAACCTCTAAGTATAA
GAAGTTTTCTTTTTTAATAAATTTCTTAATTACTCTGAGTCGTAAAATTT
GTTCATGAAATTGACAATAGATTTATTTTAAAGAATTTATTTGATAACAA
CAAGAGCGACAAAAAAATCAAACTTTGAAAGCAAAATTTGAAGAAAAAAC
ATTCTACCGTGGTATCATAGCCATGGTATATCATGGTATATCCATGTTTT
TGCTTACAGGTATATAATAATAAGTTTTGTCGTTAGATTTGCCGTGTTAT
TTTTTCAAAAGCTTCTATGCCTGGTCATATAATTTCATGGATTTAGATTT
CTACTGAGTTTGTACAATATTTTCCAGAGTATCTATCAAGTTTGAAAATG
AAAATCCTTTTTTCTTTGGAGGGGACTGATTTCATCTTTAGTTTACAGGT
TTTATTTTTACATAAGTGTTCCCGTTTCATATCAGACACATATTTCATAA
AGACAGTGTCTGCCTATTGTTATACTATGCTGATATAAGCAGAAAATGTT
TTTATTTTCCTCTTTCGGATCAATCTTGCTCCACATCCGTGTCAATTCAA
TATATCAGAGGAAGTAAATGGAACTCTTATCTAAAGACAAAACCTTTTAA
GTGATAATCCAAGGAATATATCTCACTACTGGGAATTCCACCAAGGCTTA
TTTGACTTCGACATCGAGTGACACAAGGTGTGAAAATTTTTAGTCTGAAT
TTTTTACTATTTAGTTTTACTTTACTTGCTTATTTCAGATAAAGAAAAAA
TAAAAGGAATAAAAAAAAGATCTAGATGCCACTCACCTTTAGCCTTCCCT
AATACCATAATGTTTCCTACGGCACTGCATAAGGTGTGGAATCTTTTACT
TTTCACTTTTTACTTGTTTATTTTAGATATAAGAAACAAATAAAAGAAAG
AAAAAAGAATTCAACATGTCTAACCGATTAGGACCATGTCCCGACAGCAT
TACCAAGGCATTTACCGAACCTGACGATGATTCGTACGGTGATTACAAGA
TGCGATGTTTGGTACGCTATCGTGTCGGGAATGAAGAATGGAAAATATTC
TGGGAACGAAGTCGGAAATCTGAAGATGATATCAAACTGGAACGAGATTA
TGAAAATTGGGAAGAAGATGATGATCTGAACTATAAAAGTTCAGATGGTA
TCTCGTATATCTTACGAAGATTAGATTTAGTGTTGACAAAGCTTTCAGAA
GAAACAGCTCATACTGATGCTGATGATAATAATGAAGTATGGAAAAATTT
TCAAGGCTCTTCATTTCGCAGTGATAGGTATGACAACATTGCTGGAATTA
AATTTCTTTTGTCTATACAGTGTTGTACTGTGATCTCCAAAATTTACTTT
GACGGAGAGAGTTACATTGTTTTGGTCATGTTTCCATTTAGGCTGCTTGC
ATCCTCTAACCAATTCGTGCTTCTTTTATACTACCTGTGGTTTTGTAGAG
GTCTGCGATTCAGACTAGTTTACATTCTGGTCTGTAAGACAGGTGGCCGA
ACCAAAATTTCGCCAATGATCTTCGATTATCCATATGGTCGAAATTTCAA
GATCATAGCACTTGTAAATCTTGAGAATTTAAGAAGGGCCTCGAGCCTCA
CCATAGACGATGCTATCGTCCGTTTTAGAGGGTCAGTAACCGCGGGAAAA
TAGAAAGCGCATAGTCAGGGTGTCAGAGCGTTTTACGGGAAAAAAAGTGG
TGGTCGAGTTTGGGACACCTCCACTACTGCTTAATCTGTACGAAACGATT
CCCTTCTTAAGTGATCTTGTGTAGACAGCAATCTCCCCCTAAAGATGCCT
TGTAAAAAATATTGAAAGTTGCTCATAGGGTTGATTATGATGAACAAATT
TGATTTTTAGGGAACTTAATTTTGCGAGCGAAATTTCTTCCCTTAAAGGT
AATTTATTCAGTTTGTATCTCTCTACCATAGGTATTCTTACGAGGTCGAA
GCATCTGTCATGCACTACCATTACGATGAAGGGAAAATTGTTTCAGTGAA
ACCCGATGATTATAAAACGATCATTTGCTCGAACCCAGGTCTCTTGCTGT
TAAACGGAGAAGATATGTTGACATTTTATAATCCAGTGGATGTTATGGCA
CTAAATGATGAAGAAAAGAAATTTGAAAAACAAGTCAATGAAGCTGGTAA
AGTAGCCAGAATTGTCACATTGGAGTTAAACGGCCGTTCATTTAAATATG
ACTATGAGTTTGAAAATTATTGGGATTTCCGACGTGAGTCTTATAATGCA
CCAAATCGAATGGAAGTTGAATTATATTTCAATAAAACAGTCAGTTTTAG
GCCATTCTTACAATTTGTCAAACGTCATCCTAACGTTATGTTACACATCA
AATATGCTAACACCAGCAGTACCACTGGTTTCGACTTTTATAACAATAAT
CCTGGATATGCACTCTTTTTCACAAGTTTCACATCAGCTGATTGGAAAGT
CTTTAATAAGTATTTGGCAAAACTTCATCAACTCAAACGAAACGAGTGGA
AAGCGTATGTAGAGAATGTGCAGAAAATGTTGGAAGGAGCATCTCTGGAG
ACGCCTGGTGACCCGTTTGGTCTTCTGGAAGAAATTAAAGAGAAGGAGAA
AGAAGCAACAAAACAGGATAATAATTAACCCTTTAAGTGCCGATGTCGTA
TATATACGACATGGGCTATATAGGAGGG Coding sequence (CDS) from alignment at sc0000133:58356..62533- >TCONS_00011847 ID=TCONS_00011847|Name=TCONS_00011847|organism=Clytia hemisphaerica|type=CDS|length=2118bp|location=Sequence derived from alignment at sc0000133:58356..62533- (Clytia hemisphaerica) GTATTCTTACGAGGTCGAAGCATCTGTCATGCACTACCATTACGATGAAG GGAAAATTGTTTCAGTGAAACCCGATGATTATAAAACGATCATTTGCTCG AACCCAGGTCTCTTGCTGTTAAACGGAGAAGATATGTTGACATTTTATAA TCCAGTGGATGTTATGGCACTAAATGATGAAGAAAAGAAATTTGAAAAAC AAGTCAATGAAGCTGGTAAAGTAGCCAGAATTGTCACATTGGAGTTAAAC GGCCGTTCATTTAAATATGACTATGAGTTTGAAAATTATTGGGATTTCCG ACGTGAGTCTTATAATGCACCAAATCGAATGGAAGTTGAATTATATTTCA ATAAAACAGTCAGTTTTAGGCCATTCTTACAATTTGTCAAACGTCATCCT AACGTTATGTTACACATCAAATATGCTAACACCAGCAGTACCACTGGTTT CGACTTTTATAACAATAATCCTGGATATGCACTCTTTTTCACAAGTTTCA CATCAGCTGATTGGAAAGTCTTTAATAAGTATTTGGCAAAACTTCATCAA CTCAAACGAAACGAGTGGAAAGCGTATGTAGAGAATGTGCAGAAAATGTT GGAAGGAGCATCTCTGGAGACGCCTGGTGACCCGTTTGGTCTTCTGGAAG AAATTAAAGAGAAGGAGAAAGAAGCAACAAAACAGGATAATAATTAAATG TCTAACCGATTAGGACCATGTCCCGACAGCATTACCAAGGCATTTACCGA ACCTGACGATGATTCGTACGGTGATTACAAGATGCGATGTTTGGTACGCT ATCGTGTCGGGAATGAAGAATGGAAAATATTCTGGGAACGAAGTCGGAAA TCTGAAGATGATATCAAACTGGAACGAGATTATGAAAATTGGGAAGAAGA TGATGATCTGAACTATAAAAGTTCAGATGGTATCTCGTATATCTTACGAA GATTAGATTTAGTGTTGACAAAGCTTTCAGAAGAAACAGCTCATACTGAT GCTGATGATAATAATGAAGTATGGAAAAATTTTCAAGGCTCTTCATTTCG CAGTGATAGGTATTCTTACGAGGTCGAAGCATCTGTCATGCACTACCATT ACGATGAAGGGAAAATTGTTTCAGTGAAACCCGATGATTATAAAACGATC ATTTGCTCGAACCCAGGTCTCTTGCTGTTAAACGGAGAAGATATGTTGAC ATTTTATAATCCAGTGGATGTTATGGCACTAAATGATGAAGAAAAGAAAT TTGAAAAACAAGTCAATGAAGCTGGTAAAGTAGCCAGAATTGTCACATTG GAGTTAAACGGCCGTTCATTTAAATATGACTATGAGTTTGAAAATTATTG GGATTTCCGACGTGAGTCTTATAATGCACCAAATCGAATGGAAGTTGAAT TATATTTCAATAAAACAGTCAGTTTTAGGCCATTCTTACAATTTGTCAAA CGTCATCCTAACGTTATGTTACACATCAAATATGCTAACACCAGCAGTAC CACTGGTTTCGACTTTTATAACAATAATCCTGGATATGCACTCTTTTTCA CAAGTTTCACATCAGCTGATTGGAAAGTCTTTAATAAGTATTTGGCAAAA CTTCATCAACTCAAACGAAACGAGTGGAAAGCGTATGTAGAGAATGTGCA GAAAATGTTGGAAGGAGCATCTCTGGAGACGCCTGGTGACCCGTTTGGTC TTCTGGAAGAAATTAAAGAGAAGGAGAAAGAAGCAACAAAACAGGATAAT AATTAAATGTCTAACCGATTAGGACCATGTCCCGACAGCATTACCAAGGC ATTTACCGAACCTGACGATGATTCGTACGGTGATTACAAGATGCGATGTT TGGTACGCTATCGTGTCGGGAATGAAGAATGGAAAATATTCTGGGAACGA AGTCGGAAATCTGAAGATGATATCAAACTGGAACGAGATTATGAAAATTG GGAAGAAGATGATGATCTGAACTATAAAAGTTCAGATGGTATCTCGTATA TCTTACGAAGATTAGATTTAGTGTTGACAAAGCTTTCAGAAGAAACAGCT CATACTGATGCTGATGATAATAATGAAGTATGGAAAAATTTTCAAGGCTC TTCATTTCGCAGTGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00011847-exon-sc0000133-1575043694:60357..62533 | TCONS_00011847-exon-sc0000133-1575043694:60357..62533 | Clytia hemisphaerica | exon |
| TCONS_00011847-exon-sc0000133-1575043694:59757..60157 | TCONS_00011847-exon-sc0000133-1575043694:59757..60157 | Clytia hemisphaerica | exon |
| TCONS_00011847-exon-sc0000133-1575043694:58356..59102 | TCONS_00011847-exon-sc0000133-1575043694:58356..59102 | Clytia hemisphaerica | exon |
| TCONS_00011847-exon-sc0000133-1510915933:60357..62533 | TCONS_00011847-exon-sc0000133-1510915933:60357..62533 | Clytia hemisphaerica | exon |
| TCONS_00011847-exon-sc0000133-1510915933:59757..60157 | TCONS_00011847-exon-sc0000133-1510915933:59757..60157 | Clytia hemisphaerica | exon |
| TCONS_00011847-exon-sc0000133-1510915933:58356..59102 | TCONS_00011847-exon-sc0000133-1510915933:58356..59102 | Clytia hemisphaerica | exon |
| TCONS_00011847-exon-sc0000133-1491911889:60357..62533 | TCONS_00011847-exon-sc0000133-1491911889:60357..62533 | Clytia hemisphaerica | exon |
| TCONS_00011847-exon-sc0000133-1491911889:59757..60157 | TCONS_00011847-exon-sc0000133-1491911889:59757..60157 | Clytia hemisphaerica | exon |
| TCONS_00011847-exon-sc0000133-1491911889:58356..59102 | TCONS_00011847-exon-sc0000133-1491911889:58356..59102 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0000133 | supercontig | sc0000133:58356..62533 - |
Blast
The following BLAST results are available for this feature:
|