|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011837 ID=TCONS_00011837|Name=TCONS_00011837|organism=Clytia hemisphaerica|type=transcript|length=7826bpRun BLAST on NCBI protein sequence of TCONS_00011837-protein >TCONS_00011837-protein ID=TCONS_00011837-protein|Name=TCONS_00011837-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1563bp METAAYQDELEDQLGSFPKSFSFENDLKSHVSRPRLESRMSICLPSKGFVRun BLAST on NCBI transcript from alignment at sc0000133:319510..344534+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011837 ID=TCONS_00011837|Name=TCONS_00011837|organism=Clytia hemisphaerica|type=transcript|length=25025bp|location=Sequence derived from alignment at sc0000133:319510..344534+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000133:319510..344534+ >TCONS_00011837 ID=TCONS_00011837|Name=TCONS_00011837|organism=Clytia hemisphaerica|type=CDS|length=70380bp|location=Sequence derived from alignment at sc0000133:319510..344534+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011837 vs. Swiss-Prot (Human)
Match: UBP54 (Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Homo sapiens GN=USP54 PE=1 SV=4) HSP 1 Score: 338.961 bits (868), Expect = 8.825e-94 Identity = 158/353 (44.76%), Postives = 230/353 (65.16%), Query Frame = 1
Query: 250 PSKGFVNGPGENNCFLNAAIQLLWHVNVFRRSFRLLDGHVCVENACIFCSLKKVFKQLEGSDESVIAADDMRLAMANAFVDERRFQLGRMDDAAECFENILTRLHFHTARNEAEESCSVPHCIPHQKFANHILEQTFC-KCKATSEPKPYYQFVYYVAASALVQQAKICQHEKR----PLVLGDLLKRTSQYGDIRPCPDEKRCKYKGHPENLTRIENTLLNRPDVVTVGIIWDTDSPSSSYIVDVMDCISERLFMVDLFDHVLDEDYKRVEMKLTGVVTYYGRHYTSFFYNIREKQWLFFDDAQVSKIGPSWSNVKHKCERTRFQPLLIVFTNGTGSLVNTEQALPITEIVS 1293
PSKG N PG+N+CFLN+A+Q+LWH+++FRRSFR L H C+ ++CIFC+LK +F Q + S E V+ +D +R A+A F DE+RFQLG MDDAAECFEN+L R+HFH A E+ C+ HCI HQKFA + EQ C C ATS+P P+ Q V+Y++ ++L QA IC E+R P + G+LL+ S GD+R CP C + RI L+N P ++T+G++WD+D S DV+ + L + DLF V D+ K+ E+ L G++ YYG+HY++FF+ + ++W++FDDA V +IGP W +V KC + +QPLL+++ + G+ V+T+ P E S
Sbjct: 29 PSKGLSNEPGQNSCFLNSALQVLWHLDIFRRSFRQLTTHKCMGDSCIFCALKGIFNQFQCSSEKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIHFHIADETKEDICTAQHCISHQKFAMTLFEQCVCTSCGATSDPLPFIQMVHYISTTSLCNQA-ICMLERREKPSPSMFGELLQNASTMGDLRNCPSN--CGER------IRIRRVLMNAPQIITIGLVWDSD--HSDLAEDVIHSLGTCLKLGDLFFRVTDDRAKQSELYLVGMICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKGHYQPLLLLYADPQGTPVSTQDLPPQAEFQS 370 The following BLAST results are available for this feature:
BLAST of TCONS_00011837 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.