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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011761 ID=TCONS_00011761|Name=TCONS_00011761|organism=Clytia hemisphaerica|type=transcript|length=3182bpRun BLAST on NCBI protein sequence of TCONS_00011761-protein >TCONS_00011761-protein ID=TCONS_00011761-protein|Name=TCONS_00011761-protein|organism=Clytia hemisphaerica|type=polypeptide|length=819bp MDTYGWLNQNGCYTVPTIDDRKMFSVVESAMKKIGFLQDEIHGVYRLIAARun BLAST on NCBI transcript from alignment at sc0000132:185092..198269- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011761 ID=TCONS_00011761|Name=TCONS_00011761|organism=Clytia hemisphaerica|type=transcript|length=13178bp|location=Sequence derived from alignment at sc0000132:185092..198269- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000132:185092..198269- >TCONS_00011761 ID=TCONS_00011761|Name=TCONS_00011761|organism=Clytia hemisphaerica|type=CDS|length=56580bp|location=Sequence derived from alignment at sc0000132:185092..198269- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011761 vs. Swiss-Prot (Human)
Match: MYO1A (Unconventional myosin-Ia OS=Homo sapiens GN=MYO1A PE=2 SV=1) HSP 1 Score: 726.087 bits (1873), Expect = 0.000e+0 Identity = 374/835 (44.79%), Postives = 527/835 (63.11%), Query Frame = 1
Query: 22 SRVVHQLSGERNFHIFYYLLTGGSDELLSKLSLERSMDTYGWLNQNGCYTVPTIDDRKMFSVVESAMKKIGFLQDEIHGVYRLIAAILHLGNVRFSDTFR-NGMDTVNVVDDKEIVNAAKLFGCTPEQLINILITRTVQSATDKVTTHLSKSDALYGRDALCKAIYNRLFSWIIQRINDKIRAPQRAYGKKVIGVLDIYGFEVFEANSFEQFIINYCNEKLQQLFIELTLKTEQEEYVKEGIEWIHIDYFNNAVICELIDAPKVGILAHLDEQCLLPGNVTDKTFLDKLNTACLKHEHYDSRTKSRS----DTKLGFECFLLKHFAGNVTYNVDGFIDKNNDLLFKDMSQAMYSCDLFFLKEMFPEGDPINKNKKRPPTVGQQMKSSVSMLVKDLMSKRPHYIRCIKPNDIKSPSVFSDNITRHQVRYLGLLENIRVRRAGYCYRQPYNSVLMRYKMLCDDTWPNYRRGNAKEGVQEIMKVLNISSPDIEFGKTKLFIRDPRTLFLLEEKRKERVISLVILLQKVARGFSARSKFLRMKASQIKIASHFRKYQQRKLFLVIRYSVIKMQALARGHRDRVLHQKKLRKYAAPKIIKFFKQCLAVRFIIKTQNNLPSMSPLDNDWKDFSI-LFKKASKELQVIHHAWRCRKYRQSISNEKKKVLSEKLKASEIFKNKKSSYPESVATPFSGDAVNLASNSNWSKVKAKQETLIQLNFVENVTKINRADGKEVEKLLILSDQHLVLLHPASCNILYQIDLVDVQKVSCTPHKDGLLVFHLNSQDKTNKALQKGDFVVNCPRIIELVAKLALQYKTLNNRELDVAVSDKFAATFKGKSM 2508
SR+V QL GERNFHIFY LL G ++LL L LER Y +LN V +DD F V+SAM IGF ++EI V + + +L LGNV +D F+ +G+ + D + + ++ G E++ L +RT+++A +KV T L+ A Y RDAL K IY+RLF WI+ RIN+ I+ KKV+GVLDIYGFE+ E NSFEQF+INYCNEKLQQ+FIE+TLK EQEEY +EGI W +DYF+N +IC+LI+ + GILA LDE+CL PG V+D TFL KLN KH HY+S+ + D +G CF + H+AG VTYNV FIDKNNDLLF+D+ QAM+ L+ +FPEG+P + KRPPT G Q KSSV++L+K+L SK P+YIRCIKPN+ + FS ++ Q RYLGLLEN+RVRRAGY +RQ Y L RY++L TWP++ G+ +EGV++++ L++SS ++ FGKTK+FIR P+TLF LEE+R+ R+ L L+QK+ RG+ R+ + M+ SQI I+S FR Q+K + I+ SV+ +QA RG + R ++K R AA + F + + +F++ +NNLPS + LD W A++ELQ + + W+C+++R +S ++ ++L EKL ASE+FK KK+SYP+SV PF GD + L N K+K +E + + E V K+NR +GK ++L+L+ H++L I L +V VS T KDGL HL+ KGDF++ +IEL+ K+ R+L V V++KF+ FK S+
Sbjct: 186 SRLVKQLKGERNFHIFYQLLAGADEQLLKALKLERDTTGYAYLNHE-VSRVDGMDDASSFRAVQSAMAVIGFSEEEIRQVLEVTSMVLKLGNVLVADEFQASGIPASGIRDGRGVREIGEMVGLNSEEVERALCSRTMETAKEKVVTALNVMQAQYARDALAKNIYSRLFDWIVNRINESIKVGI-GEKKKVMGVLDIYGFEILEDNSFEQFVINYCNEKLQQVFIEMTLKEEQEEYKREGIPWTKVDYFDNGIICKLIEHNQRGILAMLDEECLRPGVVSDSTFLAKLNQLFSKHGHYESKVTQNAQRQYDHTMGLSCFRICHYAGKVTYNVTSFIDKNNDLLFRDLLQAMWKAQHPLLRSLFPEGNPKQASLKRPPTAGAQFKSSVAILMKNLYSKSPNYIRCIKPNEHQQRGQFSSDLVATQARYLGLLENVRVRRAGYAHRQGYGPFLERYRLLSRSTWPHWNGGD-REGVEKVLGELSMSSGELAFGKTKIFIRSPKTLFYLEEQRRLRLQQLATLIQKIYRGWRCRTHYQLMRKSQILISSWFRGNMQKKCYGKIKASVLLIQAFVRGWKARKNYRKYFRSEAALTLADFIYKSMVQKFLLGLKNNLPSTNVLDKTWPAAPYKCLSTANQELQQLFYQWKCKRFRDQLSPKQVEILREKLCASELFKGKKASYPQSVPIPFCGDYIGLQGNPKLQKLKGGEEGPVLM--AEAVKKVNRGNGKTSSRILLLTKGHVILTDTKKSQAKIVIGLDNVAGVSVTSLKDGLFSLHLSEMSSVG---SKGDFLLVSEHVIELLTKMYRAVLDATQRQLTVTVTEKFSVRFKENSV 1012 The following BLAST results are available for this feature:
BLAST of TCONS_00011761 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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