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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011748 ID=TCONS_00011748|Name=TCONS_00011748|organism=Clytia hemisphaerica|type=transcript|length=1637bpRun BLAST on NCBI transcript from alignment at sc0000132:527182..533323+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011748 ID=TCONS_00011748|Name=TCONS_00011748|organism=Clytia hemisphaerica|type=transcript|length=6142bp|location=Sequence derived from alignment at sc0000132:527182..533323+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00011748 vs. Swiss-Prot (Human)
Match: GRN (Granulins OS=Homo sapiens GN=GRN PE=1 SV=2) HSP 1 Score: 153.68 bits (387), Expect = 3.964e-40 Identity = 98/235 (41.70%), Postives = 123/235 (52.34%), Query Frame = 3
Query: 168 GNTCCKLSSGGYGCCPLPKATCCSDGVHCCPNGYSCDG--GFCQKGNERIKASTKKIA-IKL-------KDVVCPDGQSECPSGNTCCKLSSGEYGCCPLPKATCCSDGVHCCPNGYSCDG-GVCSKATEEVKPSLLKTTKSSPQFHHHHLANVQKFDKSDIVCPDGQSECPSGYTCCPLDGGYYGCCPYDHAVCCSDEQHCCPLNSVCSPDCTECLDNNNRRFPSQTKTPSKQV 839
G TCC+L SG +GCCP +A CC D +HCCP G++CD G C++G ++ K A + L +DV C D S CPS +TCC+L+SGE+GCCP+P+A CCSD HCCP GY+C G C + +E V L K H DI C D + CP G TCCP GG + CC HAVCC D QHCCP C+ C P+ S V
Sbjct: 293 GYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTCEQGPHQVPWMEKAPAHLSLPDPQALKRDVPC-DNVSSCPSSDTCCQLTSGEWGCCPIPEAVCCSDHQHCCPQGYTCVAEGQCQRGSEIVA-GLEKMPARRASLSH----------PRDIGC-DQHTSCPVGQTCCPSLGGSWACCQLPHAVCCEDRQHCCPAGYTCNVKARSCEKEVVSAQPATFLARSPHV 514 HSP 2 Score: 149.058 bits (375), Expect = 1.484e-38 Identity = 88/229 (38.43%), Postives = 119/229 (51.97%), Query Frame = 3
Query: 171 NTCCKLSSGGYGCCPLPKATCCSDGVHCCPNGYSCDGGFCQ--------KGNERIKASTKKIAIKLKD-VVCPDGQSECPSGNTCCKLSSGEYGCCPLPKATCCSDGVHCCPNGYSCDGGVCSKATEEVKPSLLKTTKSSPQFHHHHLANVQKFDKSDIVCPDGQSECPSGYTCCPLDGGYYGCCPYDHAVCCSDEQHCCPLNSVCSPDCTECLDNNNRRFPSQTKTPS 830
+TCC + G +GCCP+P+A+CC D VHCCP+G CD + +++ A A+ L V+CPD +S CP G+TCC+L SG+YGCCP+P ATCCSD +HCCP CD ++ L ++ L + D+ C D + CP GYTCC L G +GCCP+ AVCC D HCCP C C + + P K P+
Sbjct: 137 STCCVMVDGSWGCCPMPQASCCEDRVHCCPHGAFCDLVHTRCITPTGTHPLAKKLPAQRTNRAVALSSSVMCPDARSRCPDGSTCCELPSGKYGCCPMPNATCCSDHLHCCPQDTVCD---------LIQSKCLSKENATTDL----LTKLPAHTVGDVKC-DMEVSCPDGYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTC-EQGPHQVPWMEKAPA 350 HSP 3 Score: 147.517 bits (371), Expect = 4.551e-38 Identity = 90/228 (39.47%), Postives = 114/228 (50.00%), Query Frame = 3
Query: 168 GNTCCKLSSGGYGCCPLPKATCCSDGVHCCPNGYSCDGG----FCQKGNERIKASTKKIAIKLKDVVCPDGQSECPSGNTCCKLSSGEYGCCPLPKATCCSDGVHCCPNGYSCDGGVCSKATEEVKPSLLKTTKSSPQFHHHHLANVQKFDKSDIVCPDGQSECPSGYTCCPLDGGYYGCCPYDHAVCCSDEQHCCPLNSVCSPDCTECLDNNNRRFPSQTKTPSKQV 839
G++C SG CCP P+A C DG HCCP G+ C F + GN + A + CPD Q ECP +TCC + G +GCCP+P+A+CC D VHCCP+G CD T L K + N S ++CPD +S CP G TCC L G YGCCP +A CCSD HCCP ++VC ++CL N TK P+ V
Sbjct: 70 GHSCIFTVSGTSSCCPFPEAVACGDGHHCCPRGFHCSADGRSCFQRSGNNSVGA-----------IQCPDSQFECPDFSTCCVMVDGSWGCCPMPQASCCEDRVHCCPHGAFCDLVHTRCITPTGTHPLAKKLPA-------QRTNRAVALSSSVMCPDARSRCPDGSTCCELPSGKYGCCPMPNATCCSDHLHCCPQDTVCDLIQSKCLSKENATTDLLTKLPAHTV 279 HSP 4 Score: 139.428 bits (350), Expect = 2.546e-35 Identity = 85/230 (36.96%), Postives = 117/230 (50.87%), Query Frame = 3
Query: 171 NTCCKLSSGGYGCCPLPKATCCSDGVHCCPNGYSCDG-GFCQKGNERIKASTKKIAIKL-----KDVVCPDGQSECPSGNTCCKLSSGEYGCCPLPKATCCSDGVHCCPNGYSCD--GGVCSKATEEVKPSLLKTTKSSPQFHHHHLANVQKFDKSDIVCPDGQSECPSGYTCCPLDGGYYGCCPYDHAVCCSDEQHCCPLNSVCSPDCTECLDNNNRRFPSQTKTPSKQ 836
+TCC+L+SG +GCCP+P+A CCSD HCCP GY+C G CQ+G+E + K A + +D+ C D + CP G TCC G + CC LP A CC D HCCP GY+C+ C K +P+ LA D+ C +G C TCC + + CCPY VCC+D +HCCP C+ T+CL R+ + + P+ +
Sbjct: 376 DTCCQLTSGEWGCCPIPEAVCCSDHQHCCPQGYTCVAEGQCQRGSEIVAGLEKMPARRASLSHPRDIGC-DQHTSCPVGQTCCPSLGGSWACCQLPHAVCCEDRQHCCPAGYTCNVKARSCEKEVVSAQPATF-------------LARSPHVGVKDVECGEGHF-CHDNQTCCRDNRQGWACCPYRQGVCCADRRHCCPAGFRCAARGTKCLRREAPRWDAPLRDPALR 590 HSP 5 Score: 80.8777 bits (198), Expect = 5.647e-16 Identity = 56/174 (32.18%), Postives = 74/174 (42.53%), Query Frame = 3
Query: 372 SECPSGNTCCKLSSGEYGCCPLPKATCCSDGVHCCPNGYSC--DGGVCSKATEEVKPSLLKTTKSSPQFHHHHLANVQKFDKSDIVCPDGQSECPSGYTCCPLDGGYYGCCPYDHAVCCSDEQHCCPLNSVCSPDCTECLDNNNRRFPSQTKTPSKQVEQPRDNGTIILHRSIT 887
+ C +G++C SG CCP P+A C DG HCCP G+ C DG C + + I CPD Q ECP TCC + G +GCCP A CC D HCCP + C T C+ P+ T +K++ R N + L S+
Sbjct: 65 AHCSAGHSCIFTVSGTSSCCPFPEAVACGDGHHCCPRGFHCSADGRSCFQRSG-------------------------NNSVGAIQCPDSQFECPDFSTCCVMVDGSWGCCPMPQASCCEDRVHCCPHGAFCDLVHTRCIT------PTGTHPLAKKLPAQRTNRAVALSSSVM 207 The following BLAST results are available for this feature:
BLAST of TCONS_00011748 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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