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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011742 ID=TCONS_00011742|Name=TCONS_00011742|organism=Clytia hemisphaerica|type=transcript|length=2150bpRun BLAST on NCBI protein sequence of TCONS_00011742-protein >TCONS_00011742-protein ID=TCONS_00011742-protein|Name=TCONS_00011742-protein|organism=Clytia hemisphaerica|type=polypeptide|length=686bp MFKVLLLISFAFTSIIVSAKCPTNLECPYKNGQCCEDLSTCCPSGYKCDPRun BLAST on NCBI transcript from alignment at sc0000132:506659..520189+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011742 ID=TCONS_00011742|Name=TCONS_00011742|organism=Clytia hemisphaerica|type=transcript|length=13531bp|location=Sequence derived from alignment at sc0000132:506659..520189+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000132:506659..520189+ >TCONS_00011742 ID=TCONS_00011742|Name=TCONS_00011742|organism=Clytia hemisphaerica|type=CDS|length=12348bp|location=Sequence derived from alignment at sc0000132:506659..520189+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00011742 vs. Swiss-Prot (Human)
Match: GRN (Granulins OS=Homo sapiens GN=GRN PE=1 SV=2) HSP 1 Score: 289.271 bits (739), Expect = 2.695e-87 Identity = 204/579 (35.23%), Postives = 271/579 (46.80%), Query Frame = 1
Query: 349 TQCASGSTCCVQSSGRYGCCPLPDATCCSDYVHCCPYGYTCNAQNYC--TRSANQITQKLVGTTPAKQAPVIEVDIVSFNLGDIYCGDER-TCPEGSTCCATPDGEYNCCSFPGASCCNDGIHCCPQGFTCDSEKQECRRNSERVAMQHKFPAKKSLPPANIKEECKKQPIDEKPKVVECGTDKQYFCLDGETCCLISPGVYGCCPMVEAVCCSDKKHCCPHGATCDVAHGTCLSSSGEKVQMRAHKPANVHKEYPEPKTNQKCPDGKTECADNNTCCELTSGQGYRCCKFKDAICCEDGLHCCPTGFTC-SAGGLCNNA--TVKATESKPMTLYKPMYKE------CKDGSECPSYSTCCKLNNGKYGCCPIPDATCCRDGVHCCPNHMRC-DDGHCHHGDIRIPATKKF----QSIQSNQDVSCNDGNVCSENSTCCHSEDGSSACCPAPNAVCCSNGKHCCPSGHVCSEGGCVKAN---KQIEAYQLTTKL-----VSLESVRCPDHVSECPDGNTCCKLSSGQWGCCPLPKATCCSDGVHCCPNGYTCGSGGY--CTKGSEVIKASIKNAAINNL 2004
C++G +C SG CCP P+A C D HCCP G+ C+A RS N ++G I C D + CP+ STCC DG + CC P ASCC D +HCCP G CD C + + K PA+++ + V C D + C DG TCC + G YGCCPM A CCSD HCCP CD+ CLS + PA+ + KC D + C D TCC L SG + CC F A+CCED +HCCP GFTC + G C V E P L P + C + S CPS TCC+L +G++GCCPIP+A CC D HCCP C +G C G + +K S+ +D+ C+ C TCC S GS ACC P+AVCC + +HCCP+G+ C+ VKA K++ + Q T L V ++ V C + C D TCC+ + W CCP + CC+D HCCP G+ C + G + + A +++ A+ L
Sbjct: 65 AHCSAGHSCIFTVSGTSSCCPFPEAVACGDGHHCCPRGFHCSADGRSCFQRSGNN------------------------SVGAIQCPDSQFECPDFSTCCVMVDGSWGCCPMPQASCCEDRVHCCPHGAFCDLVHTRCITPTGTHPLAKKLPAQRTNRAVALSSS------------VMC-PDARSRCPDGSTCCELPSGKYGCCPMPNATCCSDHLHCCPQDTVCDLIQSKCLSKENATTDLLTKLPAHTVGDV-------KC-DMEVSCPDGYTCCRLQSG-AWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTCEQGPHQVPWMEKAPAHLSLPDPQALKRDVPCDNVSSCPSSDTCCQLTSGEWGCCPIPEAVCCSDHQHCCPQGYTCVAEGQCQRGSEIVAGLEKMPARRASLSHPRDIGCDQHTSCPVGQTCCPSLGGSWACCQLPHAVCCEDRQHCCPAGYTCN----VKARSCEKEVVSAQPATFLARSPHVGVKDVECGEG-HFCHDNQTCCRDNRQGWACCPYRQGVCCADRRHCCPAGFRCAARGTKCLRREAPRWDAPLRDPALRQL 592 HSP 2 Score: 284.263 bits (726), Expect = 2.428e-85 Identity = 194/549 (35.34%), Postives = 267/549 (48.63%), Query Frame = 1
Query: 571 VSFNLGDIYCGDERTCPEGSTCCATPDGEYNCCSFPGASCCNDGIHCCPQGFTCDSEKQECRRNSERVAMQHKFPAKKSLPPANIKEECKKQPIDEKPKVVECGTDKQYFCLDGETCCLISPGVYGCCPMVEAVCCSDKKHCCPHGATCDVAHGTCLSSSGEKVQMRAHKPANVHKEYPEPKTNQKCPDGKTECADNNTCCELTSGQGYRCCKFKDAICCEDGLHCCPTGFTCSAGGLCNNATVKATESKPMTLYKPMYK----ECKDGSECPSYSTCCKLNNGKYGCCPIPDATCCRDGVHCCPNHMRCD--DGHCHHGDIRIPATKKFQSIQS-------NQDVSCNDGNVCSENSTCCHSEDGSSACCPAPNAVCCSNGKHCCPSGHVC-SEGGCVKANKQIEAYQ-LTTKLVSLESVR---CPDHVSECPDGNTCCKLSSGQWGCCPLPKATCCSDGVHCCPNGYTCGSGGY-CTKGSEVIKAS----IKNAAINNLKSVACPDGTSQCPDGSTCCKLSSGQYGCCPLPKATCCSDGVHCCPNGY 2148
+S +LG C + C G +C T G +CC FP A C DG HCCP+GF C ++ + C + S ++ ++C D Q+ C D TCC++ G +GCCPM +A CC D+ HCCPHGA CD+ H C++ +G + PA ++ CPD ++ C D +TCCEL SG+ Y CC +A CC D LHCCP C + + K + + P + +C CP TCC+L +G +GCCP A CC D +HCCP CD G C G ++P +K + S +DV C++ + C + TCC G CCP P AVCCS+ +HCCP G+ C +EG C + ++ + + + + SL R C H S CP G TCC G W CC LP A CC D HCCP GYTC C K EV+ A + + +K V C +G C D TCC+ + + CCP + CC+D HCCP G+
Sbjct: 53 LSRHLGGP-CQVDAHCSAGHSCIFTVSGTSSCCPFPEAVACGDGHHCCPRGFHCSADGRSCFQRSGNNSV----------------------------GAIQC-PDSQFECPDFSTCCVMVDGSWGCCPMPQASCCEDRVHCCPHGAFCDLVHTRCITPTGTH-PLAKKLPAQRTNRAVALSSSVMCPDARSRCPDGSTCCELPSGK-YGCCPMPNATCCSDHLHCCPQDTVCDL--IQSKCLSKENATTDLLTKLPAHTVGDVKCDMEVSCPDGYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTCEQGPHQVPWMEKAPAHLSLPDPQALKRDVPCDNVSSCPSSDTCCQLTSGEWGCCPIPEAVCCSDHQHCCPQGYTCVAEGQCQRGSEIVAGLEKMPARRASLSHPRDIGCDQHTS-CPVGQTCCPSLGGSWACCQLPHAVCCEDRQHCCPAGYTCNVKARSCEK--EVVSAQPATFLARSPHVGVKDVECGEGHF-CHDNQTCCRDNRQGWACCPYRQGVCCADRRHCCPAGF 563 HSP 3 Score: 270.781 bits (691), Expect = 2.242e-80 Identity = 188/555 (33.87%), Postives = 260/555 (46.85%), Query Frame = 1
Query: 169 CPYKNGQCCEDLSTCCPSGYKCDPK-RSGYCISADEYIRFPXXXXXXXXXDKALFTCPDGCTQCASGSTCCVQSSGRYGCCPLPDATCCSDYVHCCPYGYTCNAQNYCTRSANQITQKLVGTTP-AKQAPVIEVDIVSFNLGDIYCGDERT-CPEGSTCCATPDGEYNCCSFPGASCCNDGIHCCPQGFTCDSEKQEC-RRNSERVAMQHKFPAKKSLPPANIKEECKKQPIDEKPKVVECGTDKQYFCLDGETCCLISPGVYGCCPMVEAVCCSDKKHCCPHGATCDVAHGTCLSSSGEKVQMRAHKPANVHKEYPEPKTNQK-CP-DGKTECADNNTCCELTSGQGYRCCKFKDAICCEDGLHCCPTGFTCSAGGLCNN-----ATVKATESKPMTLYKPMYKECKDGSECPSYSTCCKLNNGKYGCCPIPDATCCRDGVHCCPNHMRCD--DGHCHHGDIRI-PATKKFQSIQSN-QDVSCNDGNVCSENSTCCHSEDGSSACCPAPNAVCCSNGKHCCPSGHVCSEGGCVKANKQIEAYQLTTKLVSLESV 1788
CP+ C D CCP G+ C RS + S + + CPD +C STCCV G +GCCP+P A+CC D VHCCP+G C+ + TR GT P AK+ P + + C D R+ CP+GSTCC P G+Y CC P A+CC+D +HCCPQ CD + +C + + + K PA V + D + C DG TCC + G +GCCP +AVCC D HCCP G TCD GTC + M + A H P+P+ ++ P D + C ++TCC+LTSG+ + CC +A+CC D HCCP G+TC A G C A ++ ++ +L P C + CP TCC G + CC +P A CC D HCCP C+ C + PAT +S +DV C +G+ C +N TCC ACCP VCC++ +HCCP+G C+ G ++ + + +L +
Sbjct: 84 CPFPEAVACGDGHHCCPRGFHCSADGRSCFQRSGNNSV--------------GAIQCPDSQFECPDFSTCCVMVDGSWGCCPMPQASCCEDRVHCCPHGAFCDLVH--TRCITP-----TGTHPLAKKLPAQRTNRAVALSSSVMCPDARSRCPDGSTCCELPSGKYGCCPMPNATCCSDHLHCCPQDTVCDLIQSKCLSKENATTDLLTKLPAH---------------------TVGDVKCDMEVSCPDGYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTCEQGPHQVPWM---EKAPAHLSLPDPQALKRDVPCDNVSSCPSSDTCCQLTSGE-WGCCPIPEAVCCSDHQHCCPQGYTCVAEGQCQRGSEIVAGLEKMPARRASLSHPRDIGCDQHTSCPVGQTCCPSLGGSWACCQLPHAVCCEDRQHCCPAGYTCNVKARSCEKEVVSAQPATFLARSPHVGVKDVECGEGHFCHDNQTCCRDNRQGWACCPYRQGVCCADRRHCCPAGFRCAARGTKCLRREAPRWDAPLRDPALRQL 592 HSP 4 Score: 256.144 bits (653), Expect = 5.547e-75 Identity = 174/480 (36.25%), Postives = 229/480 (47.71%), Query Frame = 1
Query: 808 LPPANIKEECKKQPIDEKPKVVE------CGTDKQYFCLDGETCCLISPGVYGCCPMVEAVCCSDKKHCCPHGATCDVAHGTCLSSSGEKVQMRAHKPANVHKEYPEPKTNQKCPDGKTECADNNTCCELTSGQGYRCCKFKDAICCEDGLHCCPTGFTCSAGGLCNNATVKATESKPMTLYKPMYKE-----------CKDG-SECPSYSTCCKLNNGKYGCCPIPDATCCRDGVHCCPNHMRCDDGHCHHGDIRIPATKKFQSIQSNQ--DVSCNDGNVCSENSTCCHSEDGSSACCPAPNAVCCSNGKHCCPSGHVC--SEGGCVKANKQIEAYQLTTKLVSL-------ESVRCPDHVSECPDGNTCCKLSSGQWGCCPLPKATCCSDGVHCCPNGYTCGSGGYCTKGSEVI----KASIKNAAINNLKSVACPDGTSQCPDGSTCCKLSSGQYGCCPLPKATCCSDGVHCCPNGY 2148
L P C + +D+ P + C D C G +C G CCP EAV C D HCCP G C +C SG +CPD + EC D +TCC + G + CC A CCED +HCCP G C L + + T + P+ P + C D S CP STCC+L +GKYGCCP+P+ATCC D +HCCP CD T + ++ DV C+ C + TCC + G+ CCP AVCC + HCCP+G C +G C + Q+ + +SL V C D+VS CP +TCC+L+SG+WGCCP+P+A CCSD HCCP GYTC + G C +GSE++ K + A++++ + + C TS CP G TCC G + CC LP A CC D HCCP GY
Sbjct: 32 LDPGGASYSCCRPLLDKWPTTLSRHLGGPCQVDAH--CSAGHSCIFTVSGTSSCCPFPEAVACGDGHHCCPRGFHCSADGRSCFQRSGNNSVGAI-----------------QCPDSQFECPDFSTCCVMVDGS-WGCCPMPQASCCEDRVHCCPHGAFCD---LVHTRCITPTGTHPLAKKLPAQRTNRAVALSSSVMCPDARSRCPDGSTCCELPSGKYGCCPMPNATCCSDHLHCCPQDTVCDLIQSKCLSKENATTDLLTKLPAHTVGDVKCDMEVSCPDGYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTCEQGPHQVPWMEKAPAHLSLPDPQALKRDVPC-DNVSSCPSSDTCCQLTSGEWGCCPIPEAVCCSDHQHCCPQGYTCVAEGQCQRGSEIVAGLEKMPARRASLSHPRDIGCDQHTS-CPVGQTCCPSLGGSWACCQLPHAVCCEDRQHCCPAGY 486 HSP 5 Score: 172.17 bits (435), Expect = 1.335e-45 Identity = 117/320 (36.56%), Postives = 150/320 (46.88%), Query Frame = 1
Query: 1228 CEDGLHCCPTGFTCSAGGLCNNATVKATESKPMTLYKPMYKECKDGSECPSYSTCCKLNNGKYGCCPIPDATCCRDGVHCCPNHMRCD-DGHCHHGDIRIPATKKFQSIQSNQ--DVSCNDGNV-CSENSTCCHSEDGSSACCPAPNAVCCSNGKHCCPSGHVC--------SEGGCVKANKQIEAYQLTTKLVSLESVRCPDHVSECPDGNTCCKLSSGQWGCCPLPKATCCSDGVHCCPNGYTCGS-GGYCTKGSEVIKASIKNAAINNLKSVACPDGTSQCPDGSTCCKLSSGQYGCCPLPKATCCSDGVHCCPNGY 2148
C DG C P GG + + P TL + + C+ + C + +C +G CCP P+A C DG HCCP C DG FQ +N + C D C + STCC DGS CCP P A CC + HCCP G C + G K++ A + + SV CPD S CPDG+TCC+L SG++GCCP+P ATCCSD +HCCP C C + + + V C D CPDG TCC+L SG +GCCP +A CC D +HCCP G+
Sbjct: 20 CPDGQFC-PVACCLDPGGASYSCCRPLLDKWPTTLSRHLGGPCQVDAHCSAGHSCIFTVSGTSSCCPFPEAVACGDGHHCCPRGFHCSADGR-----------SCFQRSGNNSVGAIQCPDSQFECPDFSTCCVMVDGSWGCCPMPQASCCEDRVHCCPHGAFCDLVHTRCITPTGTHPLAKKLPAQRTNRAVALSSSVMCPDARSRCPDGSTCCELPSGKYGCCPMPNATCCSDHLHCCPQDTVCDLIQSKCLSKENATTDLLTKLPAHTVGDVKC-DMEVSCPDGYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGF 326 The following BLAST results are available for this feature:
BLAST of TCONS_00011742 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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