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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011727 ID=TCONS_00011727|Name=TCONS_00011727|organism=Clytia hemisphaerica|type=transcript|length=414bp
TAAATAAATCAAGAACTCTCGATGGATGTTTGTTCTGCTGGTCCTTACCT
TACATTCTATGATTGCTGTTGGCTACTCTACTGCtgaattccttcaaaaa
caataaacatTGCTGACTGATGACAACCAATCCAAGAAGCTCCCATCCAC
ACACGTTTGTTACTTACGTACTCGTTCTCCTCGAAGTTACAGTCCAAGAT
GCACCTGTCTTCACTCTCTTCCTTGGATGGTCTTTCaacaaaatggaaag
ttaaGTTAACAGTCTTATTTCGGCAATTTCAATCATTTCAAGTTTACTAT
ATTTTACTCATTTCGACAAATACACATTTCGGAACCTAATACACTTTTGT
CATTTATTTGCCTCCCCAAAATCTTCACCTGTTTACACTGTTAACAACAT
TTCGACCCTCTGAc Run BLAST on NCBI transcript from alignment at sc0000132:275170..279390+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011727 ID=TCONS_00011727|Name=TCONS_00011727|organism=Clytia hemisphaerica|type=transcript|length=4221bp|location=Sequence derived from alignment at sc0000132:275170..279390+ (Clytia hemisphaerica)
TAAATAAATCAAGAACTCTCGATGGATGTTTGTTCTGCTGGTCCTTACCT
TACATTCTATGATTGCTGTTGGCTACTCTACTGCtgaattccttcaaaaa
caataaacatTGCTGACTGATGACAACCAATCCAAGAAGCTCCCATCCAC
ACACGTTTGTTACTTACGTACTCGTTCTCCTCGAAGTTACAGTCCAAGAT
GCACCTGTCTTCACTCTCTTCCTTGGATGGTCTTTCaacaaaatggaaag
ttaaGTTAACAGTCTTGTAAGTTCAAATTTCTATTCTCATCCTACCCCCT
CCATCCAACAATCAAATCTTGGTATCTGTTATGGTCTACCTTGATGGTAC
GTGTACGTCCCTGAGTTTGTTTTGCTGGTCATGGCACATGGGCAATCTTA
GTCGTGGAAAGGAACCACATTAGGTTTGCGTACCCTTGCTTTGTTGGTTT
CAAGTTGCAATTTTGTCTTTCATttctctgggggggggggcttctaACTA
TCCACCCATGTGCTCATATATCGGAAGTCGGGCAGTTGTTTTCACCCCTT
TTTTTTTCCCTTCCTTTTAATCCCTGGTAACGTCCAATGACGTTGATACA
TTAGCCATTTCATTATTCTAGCCTACGAACCTTTGGAAGCCTCGGTTGAT
AGCCCTGGGTTTCACGTGTTATCATCTTTTacctttttgtttttaactgg
GGTTTTTAACTATCCACCCATGGGTTCATTTGTCAAGTCGGGCAGTTGTT
TTTCACCCCATTTGTTCTCCCTTCTTTAATCCCTGTTGATACCCTATGGT
GTTGGTTGATACACTGGTAATTATTTCAGCTTTATAAAATGCACCTTTGG
GAAATCTACTGGTTGGATAGCCCTGGGTTTATGTGTTATGTTTCACCTTT
TGTTTTTAACTGGGTTTCTCACTATCCACCCAAAAGTTAGGCACTACTTA
CTTCAAGTTAGGCATTTGTTTTTCACCCCTCTTTTTTCATGCTATCATTC
CTGTTGACGTCCAATGACGTCATGATGCATAGTTAATTATTTAGCCTATG
AACTTTTGGAGACCTACTGGTTGGATAGCCCTGGGTTTCTGTGTTGTCat
gttttacttttgtttttaactgGGTTTCTAACTATCCACCCAAGAGTTCA
CCTGTAAGTTAGACAGTTGTTTTTCACCCTTCTTTTCTTCATCCTATCAC
TCATGCCGACGTCCAATGACGTCATGATACATTGGTCATTACTTAGCCTA
TGAATTTTTGGGAACCTGCTGATTAGATAGCCCTGGGTCTGTGCTGTCAt
gtttacttttgttttagttGGGTTTCTAACTATCCACCCATGGGTTCACC
TGTAAATTGCggagttttttctttttctttttttcacctGGCCTTTTTTG
TTTGTTCTCATTCTATTATGCCTGGCGACGTCTAATGACGTCATGATACG
CTGGTAATAATCTTAGCCTATGATCCCATGCAAACCTCGAAACCTACTGG
TTGGGTAGCTCTTGGTCTTGTGTCGTCAAGTTTTATTTTGTCTTAACTGG
GTTTCTTACTATCCAACCTTGGGTTCACATGTAAGTGGGAcagatatttt
tcttttctttcttgttttctCTTGCTACAATCCCTGGTGACGTCGAATGA
CGTCACGATTATGACGTCACGATTCAATGGTAATTATATTAGCAATGAAC
ATCTGGGAATTTACTTGTTGAGATATgggctttgtttttatttttttttt
ttttttacacctATTCTCTATACAGCTGTAACATAAATTGGGTCTGGAGA
CTTCACAATAAGTAGATTGCCTTTTTGGTTTCAACTACCCTGGGACTTGG
TTCCCTTTCTTTCCCTGAAACATACCCCACAGAGATACAGTGCTTAGATT
AAAAGTCATATGTCACCATCCTCAAATAATCTTATATTTAGCAGATCCCT
TGCATTAAATGTCCAAACAATTTTACCCTCAGATCTCAATTCAGACCATC
CTGCCTTGCTCATAtggctgtcctccttacagtcctTCGACAGGCCGTCA
ACCCTACGGTCTTAGACACCTCCAATCATCCTCATTACAATCTAGACTAA
AATCCATCATCCCTATCAGGACATGGGCTCAGGTTATTCTCACCAGGATA
TAGGCTCAGGCCATCTTCATCAAATACATAGGCTCAGGCTATTCTCATTA
TGACCTATAGGGAAAACTTTAAAGCATTAAGACTAAGACTGTCATCCTTT
TAGTAAGAGTTAGCTTCCTAATGTGTAATGACTTCTTTTTGAGTTTGGCT
GCTGATTTGGGGATGTATTGTGCGGGTAGTTTTGGGGACGTTTTGGGGGT
GTGGGTCCCTTCGGAACCCCATACTCNNNNNNNNNNNNNNNNNNNNNNNN
NNNtaataataatgatatatttctggcatttccaaaatttacatttggct
cttcacctgaaaattctgtatataatatatgtgcaatgtctagaaaaaaa
atgtaaaataaccTGGTAGTATACTGAAGAAAAATTGGGACCGTATGCGG
ACAAGCAGATAGGGACGAAGCGGTGGGCTAGTATGACGAATAAAATGATT
TGGATTGAGAAGTATAAGGGGTAAAATGTGAATAGTGATAGAGCTAGACT
AAAACCTAAACAAATCCGAGTATCTGAGTATGCTAGCTGATGCCATCACA
ATGTGtgctattataaaaaattaaggaatatatttaaaaaaaaatactaa
cataATGTTATAAGCTAGACTAGACTAAGGTTCAAGTACTATTGGTGGCT
AGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
aaaaaaaaaaaaacttcatagAACTAGAATATAATAAAGTCATATATAtg
cactgaagaaaatacaGACTAAGTAAACCTAAGAACAGATGGGCTAAATC
TAAAATCAGAATGGAGACTAGGAAACCAAGGCTACGAGTAGGGATATTAG
AAGAATTTAAATCAGAATTAatttaaaactaaaatggcgcGTGAATCAAA
TCTTCACCTGTTTACACTGTTAACAACATTTCGACCCTCCGACGTAAAAA
TTAATTAGAGCTAACTTTAGTTAGGTTAGGTTAATTTTAAGGAAGACAAA
TCAACGCCCGCAATACACCCTTCCGCCATCATGCTACGCACTCTAGAAGC
CATTGCTCAAATCCCAGTATCACTATTTATACGGGAGTGAAACCACGCTT
AGTCTTTCTTATTCTTGTGTTTTCAATTTCCCACCCTCCCTTCCCTTCCA
TACATGGAGTTAGGGAGGGACGTGGTACATATATGCGCCAGttttttgct
tgcttttttCTCTCTCATTTCAGGATGATTGGCGACGACGCCCACGTCCG
ACGACGAGGACGCACAAGCAGCAGCGCAGCTAGTCCCAGCCAGGTTTTTT
CCCCAAAAGGTGTTTTTAGTCCAGGGACTAGTCTTTTTTGTCTTCTTTTG
GGATGTATCACGCAATATGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGAGGAGTAAaggctgtcctccttacagtcca
cGNNNNNNNNNNNNNNNNNNgctgtcctccttacagtccacGCTCATAAG
GTTCAGGAGTAAaggctgtcctccttacagCCCACGCTCATAAGGTTAGG
AGTAAAGGCTGTCTTCCTTACAGTCTACGCTCATAtggctgtcctcctta
cagtcctTCGACAGGCCGTCATCCTTACGGTCTTAGGCGCTTAAGTTAGG
CCTCGTATTGCATGGTACATCCCCAACATCAGCCCCAAAGCGAACAATAT
TTCACATTTATTTCATTTCACAGATTTCGGCAATTTCAATCATTTCAAGT
TTACTATATTTTACTCATTTCGACAAATACACATTTCGGAACCTAATACA
CTTTTGTCATTTATTTGCCTCCCCAAAATCTTCACCTGTTTACACTGTTA
ACAACATTTCGACCCTCTGAc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011727-exon-sc0000132-1491911889:275170..275435 | TCONS_00011727-exon-sc0000132-1491911889:275170..275435 | Clytia hemisphaerica | exon |
| TCONS_00011727-exon-sc0000132-1510915933:275170..275435 | TCONS_00011727-exon-sc0000132-1510915933:275170..275435 | Clytia hemisphaerica | exon |
| TCONS_00011727-exon-sc0000132-1575043694:275170..275435 | TCONS_00011727-exon-sc0000132-1575043694:275170..275435 | Clytia hemisphaerica | exon |
| TCONS_00011727-exon-sc0000132-1491911889:279243..279390 | TCONS_00011727-exon-sc0000132-1491911889:279243..279390 | Clytia hemisphaerica | exon |
| TCONS_00011727-exon-sc0000132-1510915933:279243..279390 | TCONS_00011727-exon-sc0000132-1510915933:279243..279390 | Clytia hemisphaerica | exon |
| TCONS_00011727-exon-sc0000132-1575043694:279243..279390 | TCONS_00011727-exon-sc0000132-1575043694:279243..279390 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000132 | supercontig | sc0000132:275170..279390 + |
Blast
The following BLAST results are available for this feature:
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