TCONS_00011722 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011722
Unique NameTCONS_00011722
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3001

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011722 ID=TCONS_00011722|Name=TCONS_00011722|organism=Clytia hemisphaerica|type=transcript|length=3001bp
ACGGAATTGATGATAAATATATTATGTAAATtgcaaaatagtaaaaaata
acatttaaaatttcaaagtgctAAAAATAAACAATAGTTTGTACAAAGAA
ACATCGAATGAATAACATGATCGGCTGACAACAACCTTTGAATTTTATGG
GATTGTTTTAAGTTAGTTTTCGACAAAAGTCTAAAATACGAGCTCGAAAC
ATTGAGGCCGAGTTGTTGACAATGTAAGGTACAATTGAACGAATTCACGA
GCTAAGGCCAACTCCTTCAAAATCTTTTAGGCTTTTCATGATAACCAAAG
CAGCCAGGGCGCAAATTTTTGGCACTGATCAATCAAATTCAAGCGTTCTT
cagtaaaaaattaatttattatATTGAAGAACAAAACAAGAAGAAAGAGA
AAGTTTGTTCGTCGAGAAATCTCAAggattttcaggattttcctGGATTA
TATTCCATTTCTGAGCAGCTGCAAAGCAACGCTCCAGTTCTTTTTTGATA
TTTGCATTGTTGGAGTCAGCAATTTTCAATGCCATCAGAATTTCGAACAG
CTCATCCTCGATGAGAGGAGACGCGACATCTTTACTGGCTTCTAACATGT
TTGCAACAACGTACAAACCACGGTGACGAAGTTCCAAATTCTCTGATGAT
ACCagatatttgaaaatttccaaacaCGATTTGACTTTCATGACCTCCTT
GCAGATGTCAGCATCAGAGGTTAGAATAGCGAGAGTACCTGAAGCAGCGC
GTGAAAGTTCAGGTGGATCTTCTCCACAATATAAAGTTACCAACTTCACT
CGCTCACAGTCATCTTGTTCTTTGTAACGTTGGAATGCTTGTTCGTTCAA
GACGAGATTACACATACATTCGGTGGCTGCTTGTTTGATTTCATCATCTT
CTTCAAACATGAGGGATTCGACTGCTTGGAAGCCTTTCTCTTTCATGATA
CGTCGTCGCACCTCATCACTCATTGACGCAAGGTTCGTCAAAGCCATCAA
ACCTTCAAATTTGATTAACGGCTCCTCCTGGAAATGCAACATTCTTACCA
AAGGTCGAACGACTTCCATACAACGCTGTCCTGAAAAAGCAAGTCTTGGA
TCGCTTGTTATTCCGATTTTCGCCAAAGCTTGAGATGCGAGAGTTATACC
TTTGGGAGTGTTTTTGTCGGCGAGCGGTAAGAGAGTTTTCACGCCACCTT
GTGCTACCACGATTCCACGATGTTCAATATCAACCGTAACTGCATTAAGA
ATACGCGCCAACATTTCTCTAGTGTTTTCACTTTTAATGTCAGTGAAATT
GACAAGGGCACTTATCAGTCCTTTCTTCATTAATTTCTGAATACGTTTCT
TGACGTAATCGTCCTCGTCTTTTTCGTGCTTTTTGGGCAAAGGTTGTTTG
GCATACTCTGCAATTGCCTCGAGCTCGGGGTTTTTCTCTGGTTTATCATA
AGCATTGGTCAGGTTGACAAAAGTACTGCAAATCCCATACATGATGGTCG
TGTCTCCCTTCTTAGCAAGATCGAGAAGAATATTGAGAGCGTCGGCATCA
TTGACTAAGATCTCTTTCACATCCGCATCAAGAGTAAGGTAGGCTAACCC
TTCTGAAGCCCATTTACGCAACTCGAAAGTTTTGCCATCTGAACTGGTTA
AGAACTTTCGGCAGCTGGCATACAATTTCTCTGGACCTTCAGCATCTAGA
ATTTGCTGCTTGATGTCGTTGCCTCCTTTCATACAAACTTTGCAAATAGC
GACTAACCCACGCACTCTAATCCCTGCATCAGTTGAAGAGGCAAGCGCTT
GTAAAATATCTAAACCGGTATTTGCGATGGTAGAACAAATTGTCTTATCA
GTGGCACCCAATGCAAGAGCTTCAGCAGCTAATCGTTGTGCTAGTTCGTC
TTCGCGACAGCAGATTATCATTAGCTTACTGATGTTGTCATTGTTCTTTG
CGATATCATTCCCGAACTCACGAACAGCCAAAAACAAACAAGACAGAGCG
ACTAATCCTTGAATGTTACTCATTTCGTTTTGTGAGTTGATAAAGGTATC
GATTATATCCTGTGCTTGTGATTTGAACATAGCTTCGTCCTTCTCGAAAT
GTAAAATTTGTTCGTGAATAGAGGAGAGGGCGACAGAAACGTGGACGTAC
GTATCACTGTTCACGCTGAGTGGACTTGTTTTCTCTGCCATCGGGTAGCA
ACTGAAAGAAGCTAACTCTAAAAGCTTTTTGATCCCTCTATTAGTAAGGA
TGAAATCACTGACAGCTTTATGGAAAGAAATACATTGAATGAATGAGTCG
ACCACAGCATCTCTGGAATCACTCGGTAATGATGGTTCAGCGATCAACGA
GACCAAAAACTTCAAGATATCAGTGTACTCTGGCATGGATGCGAGGATGC
CGCTGATTTTCGCTTTGTTCTCTCGTATCAACATATTTTTATGAGCATCT
TCGGCTTTCAGTTGATTTTGACGAGCAACATAATCGATGATAGCTTTCAT
TTGGATGATAATCAAACTCAAAGTGTGTCTGGCGTGCTCAACACTTGAGG
AATATTTCAACAAACGCTCTCTCATTTGATTGGCCGGAAATCGATGAAGG
AATTGAATGGTAGAAGAATAATTGTTCTCGCAATATCCATGCAGAATTTT
CATCAGAGTGCTCGAGTATTCCGCGCTCGTCGATAAAATTGCCATTAGTT
TATCAATGTAGCCTCCCTTCATAAGGATTTCACGAGGTCCTGACTGATGA
GAATAGACAACAAGATTCTTCAACGCTTGAGATTTTCGCTCCTCTGTTTC
TGTAGAGCTTGTGATTGCTTCCATCATTTGGTTGATCATTCCAGGAGTGG
ATCGACTCTCGCTGACTTTCTCTTGTGCTTTCTTCGTTATTCGTCGATAG
GCTTCTTGGACAGCCGTGTTTTTAGGTTCGATTTGGATTAATCGTTTAAT
ATCCTTAAATGCTTGTTCTGTTTGACCTAATCCCTCGCTGGCTTGAAATC
T
Run BLAST on NCBI

transcript from alignment at sc0000132:146763..149825+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011722 ID=TCONS_00011722|Name=TCONS_00011722|organism=Clytia hemisphaerica|type=transcript|length=3063bp|location=Sequence derived from alignment at sc0000132:146763..149825+ (Clytia hemisphaerica)
ACGGAATTGATGATAAATATATTATGTAAATtgcaaaatagtaaaaaata
acatttaaaatttcaaagtgctAAAAATAAACAATAGTTTGTACAAAGAA
ACATCGAATGAATAACATGATCGGCTGACAACAACCTTTGAATTTTATGG
GATTGTTTTAAGTTAGTTTTCGACAAAAGTCTAAAATACGAGCTCGAAAC
ATTGAGGCCGAGTTGTTGACAATGTAAGGTACAATTGAACGAATTCACGA
GCTAAGGCCAACTCCTTCAAAATCTTTTAGGCNGTGTAAGGGACAATTAA
ACGAATTCACGAGCTAAGGCCAACTCCTTCAAAATCTCTTAGGCTTTTCA
TGATAACCAAAGCAGCCAGGGCGCAAATTTTTGGCACTGATCAATCAAAT
TCAAGCGTTCTTcagtaaaaaattaatttattatATTGAAGAACAAAACA
AGAAGAAAGAGAAAGTTTGTTCGTCGAGAAATCTCAAggattttcaggat
tttcctGGATTATATTCCATTTCTGAGCAGCTGCAAAGCAACGCTCCAGT
TCTTTTTTGATATTTGCATTGTTGGAGTCAGCAATTTTCAATGCCATCAG
AATTTCGAACAGCTCATCCTCGATGAGAGGAGACGCGACATCTTTACTGG
CTTCTAACATGTTTGCAACAACGTACAAACCACGGTGACGAAGTTCCAAA
TTCTCTGATGATACCagatatttgaaaatttccaaacaCGATTTGACTTT
CATGACCTCCTTGCAGATGTCAGCATCAGAGGTTAGAATAGCGAGAGTAC
CTGAAGCAGCGCGTGAAAGTTCAGGTGGATCTTCTCCACAATATAAAGTT
ACCAACTTCACTCGCTCACAGTCATCTTGTTCTTTGTAACGTTGGAATGC
TTGTTCGTTCAAGACGAGATTACACATACATTCGGTGGCTGCTTGTTTGA
TTTCATCATCTTCTTCAAACATGAGGGATTCGACTGCTTGGAAGCCTTTC
TCTTTCATGATACGTCGTCGCACCTCATCACTCATTGACGCAAGGTTCGT
CAAAGCCATCAAACCTTCAAATTTGATTAACGGCTCCTCCTGGAAATGCA
ACATTCTTACCAAAGGTCGAACGACTTCCATACAACGCTGTCCTGAAAAA
GCAAGTCTTGGATCGCTTGTTATTCCGATTTTCGCCAAAGCTTGAGATGC
GAGAGTTATACCTTTGGGAGTGTTTTTGTCGGCGAGCGGTAAGAGAGTTT
TCACGCCACCTTGTGCTACCACGATTCCACGATGTTCAATATCAACCGTA
ACTGCATTAAGAATACGCGCCAACATTTCTCTAGTGTTTTCACTTTTAAT
GTCAGTGAAATTGACAAGGGCACTTATCAGTCCTTTCTTCATTAATTTCT
GAATACGTTTCTTGACGTAATCGTCCTCGTCTTTTTCGTGCTTTTTGGGC
AAAGGTTGTTTGGCATACTCTGCAATTGCCTCGAGCTCGGGGTTTTTCTC
TGGTTTATCATAAGCATTGGTCAGGTTGACAAAAGTACTGCAAATCCCAT
ACATGATGGTCGTGTCTCCCTTCTTAGCAAGATCGAGAAGAATATTGAGA
GCGTCGGCATCATTGACTAAGATCTCTTTCACATCCGCATCAAGAGTAAG
GTAGGCTAACCCTTCTGAAGCCCATTTACGCAACTCGAAAGTTTTGCCAT
CTGAACTGGTTAAGAACTTTCGGCAGCTGGCATACAATTTCTCTGGACCT
TCAGCATCTAGAATTTGCTGCTTGATGTCGTTGCCTCCTTTCATACAAAC
TTTGCAAATAGCGACTAACCCACGCACTCTAATCCCTGCATCAGTTGAAG
AGGCAAGCGCTTGTAAAATATCTAAACCGGTATTTGCGATGGTAGAACAA
ATTGTCTTATCAGTGGCACCCAATGCAAGAGCTTCAGCAGCTAATCGTTG
TGCTAGTTCGTCTTCGCGACAGCAGATTATCATTAGCTTACTGATGTTGT
CATTGTTCTTTGCGATATCATTCCCGAACTCACGAACAGCCAAAAACAAA
CAAGACAGAGCGACTAATCCTTGAATGTTACTCATTTCGTTTTGTGAGTT
GATAAAGGTATCGATTATATCCTGTGCTTGTGATTTGAACATAGCTTCGT
CCTTCTCGAAATGTAAAATTTGTTCGTGAATAGAGGAGAGGGCGACAGAA
ACGTGGACGTACGTATCACTGTTCACGCTGAGTGGACTTGTTTTCTCTGC
CATCGGGTAGCAACTGAAAGAAGCTAACTCTAAAAGCTTTTTGATCCCTC
TATTAGTAAGGATGAAATCACTGACAGCTTTATGGAAAGAAATACATTGA
ATGAATGAGTCGACCACAGCATCTCTGGAATCACTCGGTAATGATGGTTC
AGCGATCAACGAGACCAAAAACTTCAAGATATCAGTGTACTCTGGCATGG
ATGCGAGGATGCCGCTGATTTTCGCTTTGTTCTCTCGTATCAACATATTT
TTATGAGCATCTTCGGCTTTCAGTTGATTTTGACGAGCAACATAATCGAT
GATAGCTTTCATTTGGATGATAATCAAACTCAAAGTGTGTCTGGCGTGCT
CAACACTTGAGGAATATTTCAACAAACGCTCTCTCATTTGATTGGCCGGA
AATCGATGAAGGAATTGAATGGTAGAAGAATAATTGTTCTCGCAATATCC
ATGCAGAATTTTCATCAGAGTGCTCGAGTATTCCGCGCTCGTCGATAAAA
TTGCCATTAGTTTATCAATGTAGCCTCCCTTCATAAGGATTTCACGAGGT
CCTGACTGATGAGAATAGACAACAAGATTCTTCAACGCTTGAGATTTTCG
CTCCTCTGTTTCTGTAGAGCTTGTGATTGCTTCCATCATTTGGTTGATCA
TTCCAGGAGTGGATCGACTCTCGCTGACTTTCTCTTGTGCTTTCTTCGTT
ATTCGTCGATAGGCTTCTTGGACAGCCGTGTTTTTAGGTTCGATTTGGAT
TAATCGTTTAATATCCTTAAATGCTTGTTCTGTTTGACCTAATCCCTCGC
TGGCTTGAAATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006589XLOC_006589Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011722-exon-sc0000132-1491911889:146763..147042TCONS_00011722-exon-sc0000132-1491911889:146763..147042Clytia hemisphaericaexon
TCONS_00011722-exon-sc0000132-1510915933:146763..147042TCONS_00011722-exon-sc0000132-1510915933:146763..147042Clytia hemisphaericaexon
TCONS_00011722-exon-sc0000132-1575043694:146763..147042TCONS_00011722-exon-sc0000132-1575043694:146763..147042Clytia hemisphaericaexon
TCONS_00011722-exon-sc0000132-1491911889:147105..149825TCONS_00011722-exon-sc0000132-1491911889:147105..149825Clytia hemisphaericaexon
TCONS_00011722-exon-sc0000132-1510915933:147105..149825TCONS_00011722-exon-sc0000132-1510915933:147105..149825Clytia hemisphaericaexon
TCONS_00011722-exon-sc0000132-1575043694:147105..149825TCONS_00011722-exon-sc0000132-1575043694:147105..149825Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000132supercontigsc0000132:146763..149825 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.2045	14.4137	4.13961	2.64608	5.00831	6.00893	12.2279	12.6224	7.86179	8.42871	6.86461	4.9015	13.665	8.22134	7.63544	6.47661	31.388	23.9635	13.1493	21.4576	14.9488	15.9138	34.9136	31.4452	6.70673	9.23299	19.0966	25.4381	27.0462	29.6801
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR024660UCS_central_dom
IPR011990TPR-like_helical_dom
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005488binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00011722 vs. Swiss-Prot (Human)
Match: UN45A (Protein unc-45 homolog A OS=Homo sapiens GN=UNC45A PE=1 SV=1)

HSP 1 Score: 422.55 bits (1085), Expect = 7.622e-131
Identity = 298/877 (33.98%), Postives = 476/877 (54.28%), Query Frame = -1 
Query:  428 RFQASEGLGQTEQAFKDIKRLIQIEPKNTAVQEAYRRITKKAQEKVSESRSTPGMINQMMEAITSSTE-TEERKSQALKNLVVYSHQSGPREILMKGGYIDKLMAILSTS-AEYSSTLMKILHGYCENNYSSTIQFLHRFPANQMRERLLKYSSSVEHARHTLSLIIIQMKAIIDYVARQNQLKAEDAHKNMLIRENKAKISGILASMP-EYTDILKFLVSLIAEPSLPSDSRDAVVDSFIQCISFHKAVSD------FILTNRGIKKLLELASFSCYPMAEKTSPLSVNSDTYVHVSVALSSIHEQILHFEKDEAMFKSQAQDIIDTFINSQNEMSNIQGLVALSCLFLAVREFGNDIAKNNDNISKLMIICCREDEXXXXXXXXXXXXXATDKTICSTIANTGLDILQALASSTDA-GIRVRGLVAICKVCMKGGNDIKQQILDAEGPE-KLYASCRKFLTSS--DGKTFELRKWASEGLAYLTLDADVKEIXXXXXXXXXXXXXXAKKGDTTIMYGICSTFVNLTNAYDKPEKNPELEAIAEYAKQPLPKKHEKDEDDYVKKRIQKLMKKGLISALVNFTDIKS----ENTREMLARILNAVTVDIEHRGIVVAQGGVKTLLPLADKNTPKGITLASQALAKIGITSDPRLAFSGQRCMEVVRPLVRMLHFQEEPLIKFEGLMALTNLASMSDEVRRRIMKEKGFQAVESLMFEEDDEIKQAATECMCNLVLNEQAFQRYKEQDDCERVKLVTLYCGEDPPELSRAASGTLAILTS-DADICKEVMKVKS-CLEIFKYLVSSENLELRHRGLYVVANMLEASKDVASPLIEDELFEILMALKIADSNNANIKKELERCFAAAQKWNIIQENPEN 3001
            R QA E LG+ +QA  D++R + +EPKN   QEA R I  + QEKV    ST   + QM + +    E   E+K +A +NLVV + +    E + +   +  L  +L     +     ++ L G C  + S T+  L                 S+   R  +S++ ++ +A+        Q+   DA K  + +  + K   I+     E   ++  L+ L+ E  +    RD  +   I+ +   K++ D        + ++G+KK+LE+      P  E    L+V +++ +  S+ LS + +  L  + +   F    ++ I ++   Q     ++ +  +SCL     + GN   + +  +  ++ +C  E E  Q +A EAL   A      S I   G+ +L+ L   ++   IR+R LV +CK+   GG D   +   AEG   KL   CRK+L +   D  T   R+WA EGLAYLT DADVKE  V DA AL  L  L++  + ++++ + S  VN TN+YD  E +P++  +A+YAKQ +P++H KD+  +V+ R++KL+  G++SA+V     +S     + RE+L+R+  A+  ++E RG VVAQGG + L+PLA + T  G T A+QALAK+ ITS+P + F G+R  EVVRPLV +LH     L  FE LMALTNLA +S+ +R++I+KEK    +E  MFEE + I++AATECMCNL ++++    ++ Q + +R+KL+ LY GED   L RAA+G LA+LTS    +C  + +V +  LEI + L+ S N EL+HRG  VV NM+EAS+++AS L+E E+ EIL  L  A  +++ + +    C   A ++ +IQ N + 
Sbjct:   98 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIGGQIQEKVRYMSSTDAKVEQMFQILLDPEEKGTEKKQKASQNLVVLAREDAGAEKIFRSNGVQLLQRLLDMGETDLMLAALRTLVGICSEHQSRTVATL-----------------SILGTRRVVSILGVESQAVSLAACHLLQVMF-DALKEGVKKGFRGKEGAIIVDPARELKVLISNLLDLLTEVGVSGQGRDNALTLLIKAVP-RKSLKDPNNSLTLWVIDQGLKKILEVGGSLQDPPGE----LAVTANSRMSASILLSKLFDD-LKCDAERENFHRLCENYIKSWFEGQGLAGKLRAIQTVSCLLQGPCDAGNRALELSGVMESVIALCASEQEEEQLVAVEALIHAAGKAKRASFITANGVSLLKDLYKCSEKDSIRIRALVGLCKLGSAGGTDFSMKQF-AEGSTLKLAKQCRKWLCNDQIDAGT---RRWAVEGLAYLTFDADVKEEFVEDAAALKALFQLSRLEERSVLFAVASALVNCTNSYDYEEPDPKMVELAKYAKQHVPEQHPKDKPSFVRARVKKLLAAGVVSAMVCMVKTESPVLTSSCRELLSRVFLALVEEVEDRGTVVAQGGGRALIPLALEGTDVGQTKAAQALAKLTITSNPEMTFPGERIYEVVRPLVSLLHLNCSGLQNFEALMALTNLAGISERLRQKILKEKAVPMIEGYMFEEHEMIRRAATECMCNLAMSKEVQDLFEAQGN-DRLKLLVLYSGEDDELLQRAAAGGLAMLTSMRPTLCSRIPQVTTHWLEILQALLLSSNQELQHRGAVVVLNMVEASREIASTLMESEMMEILSVL--AKGDHSPVTRAAAACLDKAVEYGLIQPNQDG 943
The following BLAST results are available for this feature:
BLAST of TCONS_00011722 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UN45A7.622e-13133.98Protein unc-45 homolog A OS=Homo sapiens GN=UNC45A... [more]
back to top