TCONS_00011720 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00011720
Unique Name	TCONS_00011720
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2011

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000132:42448..46691+

transcript sequence

>TCONS_00011720 ID=TCONS_00011720|Name=TCONS_00011720|organism=Clytia hemisphaerica|type=transcript|length=2011bp
TACACAATGAATTGTGATGACTCAACACAACGTCAACAAACCTTCCACAA
AATGTGTTCCTACACAAATGAGGAGGAGAACCAATCACCTCTTTTCATAT
CAGACCACGTGACAATATCACTTCAGATGTGTATAAATGGATGGAAATAT
GGACAATCTCTAAACAGTGAGTGCAGCTCATAAAGTAAGAAACTTTCTTG
TTTCATGAAAAGCAACTTAAAGACGAAGAGCGCGCTTTTGTTGGATTGTG
TTTTTTCCTCCAAATTTTCAACCAATCATGGAAAAGATGGATATTCGCCC
TGCCTCAACGCCCAAATCACAAAAAGTCTTCTATGGAGTAGGTCACATTT
TGAACGATCTCTGCGCCAACTGCTGGTTCAGCTACGTACTTTTGTATTGG
ACTAAAATCGTCGGTCTTTCCGAAACTGACGCTGGGTTGTTGTTACTGAT
CGGACAAGTAGCGGATGCCGTCAGCACCATTTTTATCGGCTACGCATGCG
ATCGAACAAAGTTTCGTTGGTATGGAAAACGTAAATTGTGGCATCTGATT
GGCTGTGCGTGTGTTCTGGTCAGTTTTCCTTTCATCTTCAATGTTTGTCT
CAGCTGTGAAGATGCATCGGAAACAAGCAAAATGTTTTATTATGCGACTT
TCGTAATTCTCTTTCAATTTGGATGGGCGTCCACTGAAAACTCCCATTTA
GCGTTGATTCCAGAGATCGCCAAACGAACCTCCGATATCGTTCAATTGAA
TGCTATCAGGTCTGGATTCTTTTTCATTTGTGGAATATTCGTTTATGGCT
TGACGTGGATTTTATTGGGTGGTGCCGAAGGCGTTGAAGTCGACCCATCA
CTCGCCCCTCAATTCAAATACCTTTCACTCGTGGTGGTGGCAGTGGGTTT
CTTTTTTGTCACCATTTTCCACTTcggaacaaaagaagaaaaatactGCC
CGCCCTCCTCCCATGACTTGGAATCCGCTGACACCAATTCTGAGGGATCA
ACAACAACGAATAAGGATAAGATCAAAACATGGAAAGATTGGTTGAGGGA
TTCTCGCTTCTACAAGACAGGACTTTTGTACATGTGTACTCGATTGTCTA
TAAACATCTTCCAATCATTCCTCGTCCTATATTTGACAGATGCCTTACAT
TTTCAAAAGGAAGCAATAGCATACTTCCCATTGATCGTTCTAATCTGTGG
CGTTGTCACTAGTTCTTTTATGCAGAAGATCACAAAGCAGATCGGCTACC
AGTTAACGTATGTGATTGGAGCTTCGCTAATGGTTGCTGGAAGTGTCTGG
TTGTTCGTGGTTACAAAGGAAGCGCGTCAATCAGTTTATGGGGCGGTCAG
TGTGGTGGGCATAAGTATCTCTATTATGTTAGTGACAGCGCTTGCAAAGA
CCGCTGAGCTTATTGGTAAAAACAAAGAATCCGGAGCGTTTGTATACTCG
TGTATGAGTTTCTTGGACAAACTTTCCACTGGTTTAGTGATTTTTGCCAT
ACAAGTTTTGAAACCAACCGCTGAAAACAGataCCAATGTAGCGATTGTG
aatggttttcaaaaatcacTCAATCAGTGGTTCCTGGTGGATTCGCCATG
ATTGGTTTCTTAGCAATGGTTCTTCTTTTCCCTTCGGAGTACACTTGTTT
GAGGAAAATATCGAATGATTTGAAACCATCCGTCAGTCGCTCAAACATCA
TATCCAATCCATCAAACGAATACGAAAAGCAATCACAAGAATATCAGACA
AAGAACCCGTCTGACATGGACATTTACTATTCAACAGAAACAGAAGATCG
CATCAATAATCATTTCGACGAAACCGTAAAGAATGTATCCTTGGGAATGC
AGCAAACGAGCCTTGATATTCCGCCAACCGAAAAGaatcaaaaatttgat
aattgctgaaacactttttttagtttttaagttGATGTGTACATATGAAC
CAATAATATTCTGTAAATAAAGTTACCGTTTTTATAGTTAAAAATCtact
agaaaaagaaa

Run BLAST on NCBI

transcript from alignment at sc0000132:42448..46691+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00011720 ID=TCONS_00011720|Name=TCONS_00011720|organism=Clytia hemisphaerica|type=transcript|length=4244bp|location=Sequence derived from alignment at sc0000132:42448..46691+ (Clytia hemisphaerica)
TACACAATGAATTGTGATGACTCAACACAACGTCAACAAACCTTCCACAA
AATGTGTTCCTACACAAATGAGGAGGAGAACCAATCACCTCTTTTCATAT
CAGACCACGTGACAATATCACTTCAGATGTGTATAAATGGATGGAAATAT
GGACAATCTCTAAACAGTGAGTGCAGCTCATAAAGTAAGAAACTTTCTTG
TTTCATGAAAAGCAACTTAAAGACGAAGAGCGCGCTTTTGTTGGATTGTG
TTTTTTCCTCCAAATGTAAGTATTCTTTCTTTCTCAACAAACTTGACTTT
TGACACGTTGACATTTGCATTGCGTTAAACCTGCTCATTTTTCTTAATAG
TTTCAACCAATCATGGAAAAGATGGATATTCGCCCTGCCTCAACGCCCAA
ATCACAAAAAGTCTTCTATGGAGTAGGTCACATTTTGAACGATCTCTGCG
CCAACTGCTGGTTCAGCTACGTACTTTTGTATTGGACTAAAATCGTCGGT
CTTTCCGAAACTGACGCTGGGTTGTTGTTACTGATCGGACAAGTAGCGGA
TGCCGTCAGCACCATTTTTATCGGCTACGCATGCGATCGAACAAAGTTTC
GTTGGTATGGAAAACGTAAATTGTGGCATCTGATTGGCTGTGCGTGTGTT
CTGGTCAGTTTTCCTTTCATCTTCAATGTTTGTCTCAGCTGTGAAGATGC
ATCGGAAACAAGCAAAATGTTTTATTATGCGACTTTCGTAATTCTCTTTC
AATTTGGATGGGCGTCCACTGAAAACTCCCATTTAGCGTTGATTCCAGAG
ATCGCCAAACGAACCTCCGATATCGTTCAATTGAATGCTATCAGGTAAGc
ttcatttttatgaaaagtaaGAATACCTGTTATTAATGATCTTTTAAACT
GTAAGGACAGTCCTTTCCGCATGTTTTCCATTTACACGTCATTCTTTGTC
ATCTTCAAGGTCTGGATTCTTTTTCATTTGTGGAATATTCGTTTATGGCT
TGACGTGGATTTTATTGGGTGGTGCCGAAGGCGTTGAAGTCGACCCATCA
CTCGCCCCTCAATTCAAAGTAAGAAAACTCATTTTTAATGGTTACGTCAC
ATACATTGAATTTCTCGAAACAATTAATTCATGACAGTGATATGAGCTTC
AAAAACCTCGAAGAGATCATgaacaaaaaaatctaaataaagatgACCAC
ATACTCGGCTTACTTTTCAAATAAGAAATAGCGCTTTTTTGTTATgtaaa
acaaaaaactatttcCATGCTTTACGAAGAGCCCAAGCTCCTTCACTTAC
TACATCTTGCACAAAGAACAGATCTGACAAACCTGTTGCTTTTCTTTCCA
GTACCTTTCACTCGTGGTGGTGGCAGTGGGTTTCTTTTTTGTCACCATTT
TCCACTTcggaacaaaagaagaaaaatactGCCCGCCCTCCTCCCATGAC
TTGGAATCCGCTGACACCAATTCTGAGGGATCAACAACAACGAATAAGGA
TAAGATCAAAACATGGAAAGATTGGTTGAGGGATTCTCGCTTCTACAAGA
CAGGACTTTTGTACATGTGTACTCGATTGTCTATAAACATCTTCCAATCA
TTCCTCGTCCTATATTTGACAGATGCCTTACATTTTCAAAAGGTAAACAT
CCAAATCTTGACCGATATATTTTTTAGCTTGTCAAGAACAAACACAAGGT
TAATGTAAAATAAacgaaaacttttttctatcTTCTCAGGAAGCAATAGC
ATACTTCCCATTGATCGTTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNatgcattgtgggattgtttcgagt
gtattacaatagaattccctcgaggaattcctaagagatttctattgtaa
tacactcgaaacaatcccacaatacatcgtttttttagaaaaatcaaaaa
ctccgataaggtctattgtaaaaaaatcagaaattttttcaacctTGAAT
TTACTCAATTTAAGgctcaaagtgccgtaaaactAGAACTTCACAGCCTC
AAAGAACATTTNGGTTTCTTTTTTGTCACCATTTTCCACTTcggaacaaa
agaagaaaaatactGTCCGCCCTCCTCCCATGACTTGGAATCCGCTGACA
CCAATTCTGAGGGATCAACAACAACGAATAAGGATAAGATCAAAACATGG
AAAGATTGGTTGAGGGATTCTCGCTTCTACAAGACAGGACTTTTGTACAT
GTGTACTCGATTGTCTATAAACATCTTCCAATCATTCCTCGTCCTATATT
TGACAGATGCCTTACATTTTCAAAAGGTAAACATCCAAATCTTGACCGAT
ATATTTTTTAGCTTGTCAAGAACAAACACAAGGTTAATGTAAAATAAacg
aaaacttttttctatcTTCTCAGGAAGCAATAGCATACTTCCCATTGATC
GTTCTAATCTGTGGCGTTGTCACTAGTTCTTTTATGCAGAAGATCACAAA
GCAGATCGGCTACCAGGTATACCCTTATCATATATTACATATTTTTTGCA
TAACTTTGATAAATTATACCTCGTGTTTGACGTAACCTTGCAAAAATCAT
CCGGTGCAATCAAGCGATTCCTGATTACTCATTAAATCACAAGAAGCCTA
CCTGCCTTAATGACTTCCTTTTGATAATTGATCATGTCGAATGAGCAGCT
TCCTTATTCCCTTCACTAGTTAACGTATGTGATTGGAGCTTCGCTAATGG
TTGCTGGAAGTGTCTGGTTGTTCGTGGTTACAAAGGAAGCGCGTCAATCA
GTTTATGGGGCGGTCAGTGTGGTGGGCATAAGTATCTCTATTATGTTAGT
GACAGCGCTTGCAAAGACCGCTGAGCTTATTGGTAAAAACAAAGAATCCG
GAGCGTTTGTATACTCGTGTATGAGTTTCTTGGACAAACTTTCCACTGGT
TTAGTGATTTTTGCCATACAAGTTTTGAAACCAACCGCTGAAAACAGGTC
AGTTTNctccaatgataccaaatttataaagattgaagaattccttcaaa
agttattggtaaatgaaaaaagagtgcacacttatcgtgaatagacttta
gctCTTATAAAAATGTACTGCGGACTAATTTATCTAACGAGGNTTTTGCC
ATACAAGTTTTGAAACCAACCGCTGAAAACAGGTCAGTTTTTTATCTTAc
ttttttaacttaaaaaataaaacgaggctaaaaatagaccttatcggagt
tttttatttttctaaaaaagcaatgcattgtgggattgtttcgagtgtat
tacaatagaattcccNAGATGACAATCATTAGTTTCTGTTTGCATTTTCA
GCTCTCTTATTTATACAaactcaatttttgattttaaagataCCAATGTA
GCGATTGTGaatggttttcaaaaatcacTCAATCAGTGGTTCCTGGTGGA
TTCGCCATGATTGGTTTCTTAGCAATGGTTCTTCTTTTCCCTTCGGAGTA
CACTTGTTTGAGGAAAAGTAAGTTATTTTCAGTTCGAGGATATTCATTTT
CCTGAATCAATTTCATTCTTTTCAAAAAGAGAAATCGTTTTAGTTTCTGG
TTGGAAGCTTTAAACGAGGAAAAGATCGCGTCACTTTGGTAACTTCCTTA
CAAAAATATGTCCTTATTAGACCGTCATCCGATATATTGTCAGAAATGGT
AACGAGATCTGACTTCACGCAAAATTAACAAAGCTACCGCAAGTACAAAC
ATGTCGAATGACACACCTATTAAATCTTCCTGctaaaacaaagcaaaaca
gacaataaattatattcaaatttactTCTCTATCCTTTCAGTATCGAATG
ATTTGAAACCATCCGTCAGTCGCTCAAACATCATATCCAATCCATCAAAC
GAATACGAAAAGCAATCACAAGAATATCAGACAAAGAACCCGTCTGACAT
GGACATTTACTATTCAACAGAAACAGAAGATCGCATCAATAATCATTTCG
ACGAAACCGTAAAGAATGTATCCTTGGGAATGCAGCAAACGAGCCTTGAT
ATTCCGCCAACCGAAAAGaatcaaaaatttgataattgctgaaacacttt
ttttagtttttaagttGATGTGTACATATGAACCAATAATATTCTGTAAA
TAAAGTTACCGTTTTTATAGTTAAAAATCtactagaaaaagaaa

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006588	XLOC_006588	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000132	supercontig	sc0000132:42448..46691 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0191989	0	0.0109045	0	0	0.0305917	0.0419466	0	0.0451604	0.109706	0	4.40464	0.768311	0	0	0	0	0	0	0	0.570766	0	0	0.732353	2.18231	0	0.379884	1.39498	0

Blast

[Close]

BLAST of TCONS_00011720 vs. Swiss-Prot (Human)
Match: MFS12 (Major facilitator superfamily domain-containing protein 12 OS=Homo sapiens GN=MFSD12 PE=1 SV=2)

HSP 1 Score: 320.472 bits (820), Expect = 7.647e-101
Identity = 190/469 (40.51%), Postives = 270/469 (57.57%), Query Frame = 2

Query:  323 KVFYGVGHILNDLCANCWFSYVLLYWTKIVGLSETDAGLLLLIGQVADAVSTIFIGYACDRTK--FRWYGKRKLWHLIGCACVLVSFPFIFNVCLSCEDAS-ETSKMFYYATFVILFQFGWASTENSHLALIPEIAKRTSDIVQLNAIRSGFFFICGIFVYGLTWILLGGAEGVEVDPSL------------APQFKYLSLVVVAVGFFFVTIFHFGTKEEKYCPPSSHDLESADTNSEGSTTTNKDKIKTWKDWLRDSRFYKTGLLYMCTRLSINIFQSFLVLYLTDALHFQKEAIAYFPLIVLICGVVTSSFMQKITKQIGYQLTYVIGASLMVAGSVWLFVVTKEARQSVYGAVSVVGISISIMLVTALAKTAELIGKNKESGAFVYSCMSFLDKLSTGLVIFAIQVLKPTAENRYQCSDCEWFSKITQSVVPGGFAM--IGFLAMVLLFPSEYTCLRKISNDLKP 1678
            ++ Y VGH LNDLCA+ WF+Y+LLY   +   S   AGLLLL+GQVAD + T  +GY  DR       YG RK WHL+G  CVL+SFPFIF+ CL C  A+ E + + YY  F+++FQFGWAST+ SHL+LIPE+     + V+L A+R  F  +  I VYG  W+LL       V+P+              P F+ LSL+VV VG  F  +FH GT+E +      H  E  +     +  T +  +  WK WLR+  FY+ G+LYM TRL +N+ Q+++ +YLT +LH  K+ IA  PL++ + G ++S  M+ I K IG  +TY  G  +++A + W+  + +    +VY A  ++G   + +LVT+LA TA+LIG +  SGAFVY  MSFLDK++ GL + AIQ L P   +   C  C  F       V GG  +     L  +LL+P+    LR+   D +P
Sbjct:   22 RLSYAVGHFLNDLCASMWFTYLLLYLHSVRAYSSRGAGLLLLLGQVADGLCTPLVGYEADRAASCCARYGPRKAWHLVGTVCVLLSFPFIFSPCLGCGAATPEWAALLYYGPFIVIFQFGWASTQISHLSLIPELVTNDHEKVELTALRYAFTVVANITVYGAAWLLLHLQGSSRVEPTQDISISDQLGGQDVPVFRNLSLLVVGVGAVFSLLFHLGTRERR----RPHAEEPGEHTPLLAPATAQ-PLLLWKHWLREPAFYQVGILYMTTRLIVNLSQTYMAMYLTYSLHLPKKFIATIPLVMYLSGFLSSFLMKPINKCIGRNMTYFSGLLVILAFAAWV-ALAEGLGVAVYAAAVLLGAGCATILVTSLAMTADLIGPHTNSGAFVYGSMSFLDKVANGLAVMAIQSLHP-CPSELCCRACVSFYHWAMVAVTGGVGVAAALCLCSLLLWPTR---LRRWDRDARP 480

The following BLAST results are available for this feature:

BLAST of TCONS_00011720 vs. Swiss-Prot (Human)

BLAST of TCONS_00011720 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MFS12	7.647e-101	40.51	Major facilitator superfamily domain-containing pr...	[more]

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TCONS_00011720 (transcript) - C. hemisphaerica