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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011717 ID=TCONS_00011717|Name=TCONS_00011717|organism=Clytia hemisphaerica|type=transcript|length=1369bp
AGGAAAGTTTTATTTTCAGCTTCAAACGAGCTATCAAACGTAGAGGTGTG
AGAGGGCCGAGTTTATTTCCAGGTGATACGATTCAATTGGCAAACGAAGG
AACTAAAATTTAATCTTTAAATATACTTTCTAGttcaaacgaaaaaaaaa
cgtaaacacaAAACTGAAAATGAAGACACCACTGCTCCTGCTAGCACTGC
TTTTCGTGGTCACAATAAGAAGCGCTTATGGGNAATGAAGACATCACTGC
TCCTGTTATCACTGCTTTTCGTGGTCACAACAAGAAGCGCTTATGGAAGC
TGGCACAAATACAACCACGGTGTTAAAAACTTGATCAGTGGAATGGCATC
TATGCCATCGAGTACGACAAAATTGTTCGGTGTAGGGCGCAATGGACATT
TATGGGAAAGGATTTGGTCAGGCAATTCTTGGCATTGGGTAGATCATTGG
GTGCCACCTGGCATGCTTTTGAGCGGCGATAAACTGGAATCAACTCCTTG
TGTCATAAGGGAAGGAAAGTTGTTTGTTGTttccaaaaaagGTCGATTGT
GGGAGAGACATTGGGGTAATGGAAAATGGAATTGGGTTTTCCATGGCAGA
CCATtgaatttcaacaaccaacgCGTTGATCTGGATCCGACCAAATGCAT
GGCAAGTAGAGGTAACAACATGGACCGAGTGTTTGCGCGTGGTACCGATG
GAGAGATATACCAGTTAAGATCGGTCCCTGGACCTTTTGGTGGCTGGAGT
TGGAGAGCTCATTTCAGGCCCAATGGTGTTGGAATCAGGATCGTGAGTGG
AGGATTCGATGTCGGCATGACTGGTACACATCTCTACGCCATCGCCAACA
ATGGTCAACTCTATCGTTTCCCTTTGAGCCAAGGCACCGCGCCATCCTTG
TGGGAGAATTCACTTGGTAGGCCATCCTTCACCAATCTTCAAAGCCTTTC
TGTTAGCACCAGAAATGGCGTGACCAGAGTCTTAGTGGTGTCTGTCAGAA
ATGAAGTCCATACTTGGAGTGGTAACCCGAATACCTTCTCTGTAGGTTCT
CGCCCGAACGGTGTCCACTCATTTGGGCAAGCCATTATCCTCTCCAAGGA
GTTTCAGCATACTTGTAGTGGAAACACAGAAACGATGGTCATGGTTAGGA
CACTGCAAACAATATACTCCATGACCCTTCCAGGCTTCGCTTTTACACAA
GTCGGTTCAACCCACCACCTCTTTATAGATGAGGTGCCAGCCGTTCTGCA
AAACCCAAGATGCCCAAAAGTCTTCGTTGTCACCAGCGAAGGTGAACTTg
tagaattttttgtttaattaaTATTTTCATACTCTCTctccctctctaat
tcgaatttctatAATACGC Run BLAST on NCBI protein sequence of TCONS_00011717-protein >TCONS_00011717-protein ID=TCONS_00011717-protein|Name=TCONS_00011717-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp
MKTSLLLLSLLFVVTTRSAYGSWHKYNHGVKNLISGMASMPSSTTKLFGV
GRNGHLWERIWSGNSWHWVDHWVPPGMLLSGDKLESTPCVIREGKLFVVS
KKGRLWERHWGNGKWNWVFHGRPLNFNNQRVDLDPTKCMASRGNNMDRVF
ARGTDGEIYQLRSVPGPFGGWSWRAHFRPNGVGIRIVSGGFDVGMTGTHL
YAIANNGQLYRFPLSQGTAPSLWENSLGRPSFTNLQSLSVSTRNGVTRVL
VVSVRNEVHTWSGNPNTFSVGSRPNGVHSFGQAIILSKEFQHTCSGNTET
MVMVRTLQTIYSMTLPGFAFTQVGSTHHLFIDEVPAVLQNPRCPKVFVVT
SEGELVEFFV Run BLAST on NCBI transcript from alignment at sc0000132:6727..9471+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011717 ID=TCONS_00011717|Name=TCONS_00011717|organism=Clytia hemisphaerica|type=transcript|length=2745bp|location=Sequence derived from alignment at sc0000132:6727..9471+ (Clytia hemisphaerica)
AGGAAAGTTTTATTTTCAGCTTCAAACGAGCTATCAAACGTAGAGGTGTG
AGAGGGCCGAGTTTATTTCCAGGTGATACGATTCAATTGGCAAACGAAGG
AACTAAAATTTAATCTTTAAATATACTTTCTAGttcaaacgaaaaaaaaa
cgtaaacacaAAACTGAAAATGAAGACACCACTGCTCCTGCTAGCACTGC
TTTTCGTGGTCACAATAAGAAGCGCTTATGGGNAATGAAGACATCACTGC
TCCTGTTATCACTGCTTTTCGTGGTCACAACAAGAAGCGCTTATGGAAGC
TGGCACAAATACAACCACGGTGTTAAAAACTTGATCAGTGGAATGGCATC
TATGCCATCGAGTACGACAAAATTGTTCGGTGTAGGGCGCAATGGACATT
TATGGGAAAGGATTTGGTCAGGCAATTCTTGGCATTGGGTAGATCATTGG
GTGCCACCTGGCATGCTTTTGAGCGGCGATAAACTGGAATCAACTCCTTG
TGTCATAAGGGAAGGAAAGTTGTTTGTTGTttccaaaaaaggtaaaaatc
aattcatatacttttctttCCATAACTATTCTATGACTATCGAGTTCAAG
ATAATTCTTGAGGTAAAGAATAAAATGTATTTCCCAGGGCCACAGTTGAC
TGGGTCTAAAAACCGTAGATGTTTTTCAAGATAATTCAGCTCTTCGGTAC
GTGTCAACTGTAGTAAAACGATCTACAGCTCAGATAAGTGCAAGTGTACG
TTTAACCTATAACACgttcactgattgaaaaaactATCCATAGCTCGTAT
ACATTACAAGTATTAATGTAAACTTCACCAACTTTTGTTTGCCACGTGTT
GTAACCTAACTGTTAATTTGATTGACAGGTCGATTGTGGGAGAGACATTG
GGGTAATGGAAAATGGAATTGGGTTTTCCATGGCAGACCATtgaatttca
acaaccaacgCGTTGATCTGGATCCGACCAAATGCATGGCAAGTAGAGGT
AAGAAGGCTGAAATTTGACGATTGATAGACTTTTATAGCGCTTCTTACTG
GAGCCTTGTACCTTGTAGATGATATTCataacgtaatgttttctacaggA
ACAGTCCAGTTTTTGCAAGTAGTgacaaattttaaacaattttactCTAG
CTTACATTTCTTAAGTATAAGTAAgactgcgaccgcagtcggaggcaacc
cgaaggctcctctttcgatagctatctacccgaaggtagaggAGGGCGCC
agtctttctccctggattgctccacttacccttgatccttctcttaattt
ctgagcatcaagcagagaggcatcaagtaccattttgggaatctttggta
tgacccggctgggggttgtaCCCGCAACCCTTGCGAatcgtagccggatg
ctctaccactgcactacggtcgctataTAAAGACTCTTTAGAACTATCAC
TACCCGCTTAATTCCAATATCATCTTTGTTGATTAAAGCTTACTCACTGA
TAAAAACTTTCATACAACACCCTCTCAGAAGGTCAAACAATgtcgaaaaa
tgtttttactaCGGTAGCGTCAGTTAAGAAATTCAAGGTTTCGGTAGTAT
TGGAAAATCACAAATTATAGTTATTTCATCGTTCTAAGAATGCGCTTGAA
TATAAATGTGTAAAATAAGCATTTATCTAAACTGTCTGCTAGCCAGAAAC
AATTTTCATAATAATTTATTCACTTAGGTAACAACATGGACCGAGTGTTT
GCGCGTGGTACCGATGGAGAGATATACCAGTTAAGATCGGTCCCTGGACC
TTTTGGTGGCTGGAGTTGGAGAGCTCATTTCAGGCCCAATGGTGTTGGAA
TCAGGGTAAGCTGctgctaatttttttttcacatttggaaTTTTGCTGTC
GATTTGGTAAATAATCTTCAGCCACTAATCGATGTAATGAGAGTTAAATA
TTTTAGCTGATATCTATTTGAACTGTGAGAGTTCAGTTTCAAGTGTGTAA
CTTAACTTGTATTCAGAAATATGAATAATCTTCAGCCACTAATCGATGTT
CTGAGAGTTTAATATTTTAGCTCATATCTATTTGAATTGTGAGAGTTCAG
TTTCTAGTGTGTAACTTAACTTGTATTCAGAAATATGAAACAACAATTTT
ATATTCATTAACCAGATCGTGAGTGGAGGATTCGATGTCGGCATGACTGG
TACACATCTCTACGCCATCGCCAACAATGGTCAACTCTATCGTTTCCCTT
TGAGCCAAGGCACCGCGCCATCCTTGTGGGAGAATTCACTTGGTAGGCCA
TCCTTCACCAATCTTCAAAGCCTTTCTGTTAGCACCAGAAATGGCGTGAC
CAGAGTCTTAGTGGTGTCTGTCAGAAATGAAGTCCATACTTGGAGTGGTA
ACCCGAATACCTTCTCTGTAGGTTCTCGCCCGAACGGTGTCCACTCATTT
GGGCAAGCCATTATCCTCTCCAAGGAGTTTCAGCATACTTGTAGTGGAAA
CACAGAAACGATGGTCATGGTTAGGACACTGCAAACAATATACTCCATGA
CCCTTCCAGGCTTCGCTTTTACACAAGTCGGTTCAACCCACCACCTCTTT
ATAGATGAGGTGCCAGCCGTTCTGCAAAACCCAAGATGCCCAAAAGTCTT
CGTTGTCACCAGCGAAGGTGAACTTgtagaattttttgtttaattaaTAT
TTTCATACTCTCTctccctctctaattcgaatttctatAATACGC Coding sequence (CDS) from alignment at sc0000132:6727..9471+ >TCONS_00011717 ID=TCONS_00011717|Name=TCONS_00011717|organism=Clytia hemisphaerica|type=CDS|length=4332bp|location=Sequence derived from alignment at sc0000132:6727..9471+ (Clytia hemisphaerica)
ATGAAGACATCACTGCTCCTGTTATCACTGCTTTTCGTGGTCACAACAAG
AAGCGCTTATGGAAGCTGGCACAAATACAACCACGGTGTTAAAAACTTGA
TCAGTGGAATGGCATCTATGCCATCGAGTACGACAAAATTGTTCGGTGTA
GGGCGCAATGGACATTTATGGGAAAGGATTTGGTCAGGCAATTCTTGGCA
TTGGGTAGATCATTGGGTGCCACCTGGCATGCTTTTGAGCGGCGATAAAC
TGGAATCAACTCCTTGTGTCATAAGGGAAGGAAAGTTGTTTGTTGTttcc
aaaaaagGTCGATTGTGGGAGAGACATTGGGGTAATGGAAAATGGAATTG
GGTTTTCCATGGCAGACCATtgaatttcaacaaccaacgCGTTGATCTGG
ATCCGACCAAATGCATGGCAAGTAGAGGTAACAACATGGACCGAGTGTTT
GCGCGTGGTACCGATGGAGAGATATACCAGTTAAGATCGGTCCCTGGACC
TTTTGGTGGCTGGAGTTGGAGAGCTCATTTCAGGCCCAATGGTGTTGGAA
TCAGGATCGTGAGTGGAGGATTCGATGTCGGCATGACTGGTACACATCTC
TACGCCATCGCCAACAATGGTCAACTCTATCGTTTCCCTTTGAGCCAAGG
CACCGCGCCATCCTTGTGGGAGAATTCACTTGGTAGGCCATCCTTCACCA
ATCTTCAAAGCCTTTCTGTTAGCACCAGAAATGGCGTGACCAGAGTCTTA
GTGGTGTCTGTCAGAAATGAAGTCCATACTTGGAGTGGTAACCCGAATAC
CTTCTCTGTAGGTTCTCGCCCGAACGGTGTCCACTCATTTGGGCAAGCCA
TTATCCTCTCCAAGGAGTTTCAGCATACTTGTAGTGGAAACACAGAAACG
ATGGTCATGGTTAGGACACTGCAAACAATATACTCCATGACCCTTCCAGG
CTTCGCTTTTACACAAGTCGGTTCAACCCACCACCTCTTTATAGATGAGG
TGCCAGCCGTTCTGCAAAACCCAAGATGCCCAAAAGTCTTCGTTGTCACC
AGCGAAGGTGAACTTgtagaattttttgtttaaATGAAGACATCACTGCT
CCTGTTATCACTGCTTTTCGTGGTCACAACAAGAAGCGCTTATGGAAGCT
GGCACAAATACAACCACGGTGTTAAAAACTTGATCAGTGGAATGGCATCT
ATGCCATCGAGTACGACAAAATTGTTCGGTGTAGGGCGCAATGGACATTT
ATGGGAAAGGATTTGGTCAGGCAATTCTTGGCATTGGGTAGATCATTGGG
TGCCACCTGGCATGCTTTTGAGCGGCGATAAACTGGAATCAACTCCTTGT
GTCATAAGGGAAGGAAAGTTGTTTGTTGTttccaaaaaagGTCGATTGTG
GGAGAGACATTGGGGTAATGGAAAATGGAATTGGGTTTTCCATGGCAGAC
CATtgaatttcaacaaccaacgCGTTGATCTGGATCCGACCAAATGCATG
GCAAGTAGAGGTAACAACATGGACCGAGTGTTTGCGCGTGGTACCGATGG
AGAGATATACCAGTTAAGATCGGTCCCTGGACCTTTTGGTGGCTGGAGTT
GGAGAGCTCATTTCAGGCCCAATGGTGTTGGAATCAGGATCGTGAGTGGA
GGATTCGATGTCGGCATGACTGGTACACATCTCTACGCCATCGCCAACAA
TGGTCAACTCTATCGTTTCCCTTTGAGCCAAGGCACCGCGCCATCCTTGT
GGGAGAATTCACTTGGTAGGCCATCCTTCACCAATCTTCAAAGCCTTTCT
GTTAGCACCAGAAATGGCGTGACCAGAGTCTTAGTGGTGTCTGTCAGAAA
TGAAGTCCATACTTGGAGTGGTAACCCGAATACCTTCTCTGTAGGTTCTC
GCCCGAACGGTGTCCACTCATTTGGGCAAGCCATTATCCTCTCCAAGGAG
TTTCAGCATACTTGTAGTGGAAACACAGAAACGATGGTCATGGTTAGGAC
ACTGCAAACAATATACTCCATGACCCTTCCAGGCTTCGCTTTTACACAAG
TCGGTTCAACCCACCACCTCTTTATAGATGAGGTGCCAGCCGTTCTGCAA
AACCCAAGATGCCCAAAAGTCTTCGTTGTCACCAGCGAAGGTGAACTTgt
agaattttttgtttaaATGAAGACATCACTGCTCCTGTTATCACTGCTTT
TCGTGGTCACAACAAGAAGCGCTTATGGAAGCTGGCACAAATACAACCAC
GGTGTTAAAAACTTGATCAGTGGAATGGCATCTATGCCATCGAGTACGAC
AAAATTGTTCGGTGTAGGGCGCAATGGACATTTATGGGAAAGGATTTGGT
CAGGCAATTCTTGGCATTGGGTAGATCATTGGGTGCCACCTGGCATGCTT
TTGAGCGGCGATAAACTGGAATCAACTCCTTGTGTCATAAGGGAAGGAAA
GTTGTTTGTTGTttccaaaaaagGTCGATTGTGGGAGAGACATTGGGGTA
ATGGAAAATGGAATTGGGTTTTCCATGGCAGACCATtgaatttcaacaac
caacgCGTTGATCTGGATCCGACCAAATGCATGGCAAGTAGAGGTAACAA
CATGGACCGAGTGTTTGCGCGTGGTACCGATGGAGAGATATACCAGTTAA
GATCGGTCCCTGGACCTTTTGGTGGCTGGAGTTGGAGAGCTCATTTCAGG
CCCAATGGTGTTGGAATCAGGATCGTGAGTGGAGGATTCGATGTCGGCAT
GACTGGTACACATCTCTACGCCATCGCCAACAATGGTCAACTCTATCGTT
TCCCTTTGAGCCAAGGCACCGCGCCATCCTTGTGGGAGAATTCACTTGGT
AGGCCATCCTTCACCAATCTTCAAAGCCTTTCTGTTAGCACCAGAAATGG
CGTGACCAGAGTCTTAGTGGTGTCTGTCAGAAATGAAGTCCATACTTGGA
GTGGTAACCCGAATACCTTCTCTGTAGGTTCTCGCCCGAACGGTGTCCAC
TCATTTGGGCAAGCCATTATCCTCTCCAAGGAGTTTCAGCATACTTGTAG
TGGAAACACAGAAACGATGGTCATGGTTAGGACACTGCAAACAATATACT
CCATGACCCTTCCAGGCTTCGCTTTTACACAAGTCGGTTCAACCCACCAC
CTCTTTATAGATGAGGTGCCAGCCGTTCTGCAAAACCCAAGATGCCCAAA
AGTCTTCGTTGTCACCAGCGAAGGTGAACTTgtagaattttttgtttaaA
TGAAGACATCACTGCTCCTGTTATCACTGCTTTTCGTGGTCACAACAAGA
AGCGCTTATGGAAGCTGGCACAAATACAACCACGGTGTTAAAAACTTGAT
CAGTGGAATGGCATCTATGCCATCGAGTACGACAAAATTGTTCGGTGTAG
GGCGCAATGGACATTTATGGGAAAGGATTTGGTCAGGCAATTCTTGGCAT
TGGGTAGATCATTGGGTGCCACCTGGCATGCTTTTGAGCGGCGATAAACT
GGAATCAACTCCTTGTGTCATAAGGGAAGGAAAGTTGTTTGTTGTttcca
aaaaagGTCGATTGTGGGAGAGACATTGGGGTAATGGAAAATGGAATTGG
GTTTTCCATGGCAGACCATtgaatttcaacaaccaacgCGTTGATCTGGA
TCCGACCAAATGCATGGCAAGTAGAGGTAACAACATGGACCGAGTGTTTG
CGCGTGGTACCGATGGAGAGATATACCAGTTAAGATCGGTCCCTGGACCT
TTTGGTGGCTGGAGTTGGAGAGCTCATTTCAGGCCCAATGGTGTTGGAAT
CAGGATCGTGAGTGGAGGATTCGATGTCGGCATGACTGGTACACATCTCT
ACGCCATCGCCAACAATGGTCAACTCTATCGTTTCCCTTTGAGCCAAGGC
ACCGCGCCATCCTTGTGGGAGAATTCACTTGGTAGGCCATCCTTCACCAA
TCTTCAAAGCCTTTCTGTTAGCACCAGAAATGGCGTGACCAGAGTCTTAG
TGGTGTCTGTCAGAAATGAAGTCCATACTTGGAGTGGTAACCCGAATACC
TTCTCTGTAGGTTCTCGCCCGAACGGTGTCCACTCATTTGGGCAAGCCAT
TATCCTCTCCAAGGAGTTTCAGCATACTTGTAGTGGAAACACAGAAACGA
TGGTCATGGTTAGGACACTGCAAACAATATACTCCATGACCCTTCCAGGC
TTCGCTTTTACACAAGTCGGTTCAACCCACCACCTCTTTATAGATGAGGT
GCCAGCCGTTCTGCAAAACCCAAGATGCCCAAAAGTCTTCGTTGTCACCA
GCGAAGGTGAACTTgtagaattttttgtttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011717-exon-sc0000132-1491911889:6727..7267 | TCONS_00011717-exon-sc0000132-1491911889:6727..7267 | Clytia hemisphaerica | exon |
| TCONS_00011717-exon-sc0000132-1510915933:6727..7267 | TCONS_00011717-exon-sc0000132-1510915933:6727..7267 | Clytia hemisphaerica | exon |
| TCONS_00011717-exon-sc0000132-1575043694:6727..7267 | TCONS_00011717-exon-sc0000132-1575043694:6727..7267 | Clytia hemisphaerica | exon |
| TCONS_00011717-exon-sc0000132-1491911889:7605..7724 | TCONS_00011717-exon-sc0000132-1491911889:7605..7724 | Clytia hemisphaerica | exon |
| TCONS_00011717-exon-sc0000132-1510915933:7605..7724 | TCONS_00011717-exon-sc0000132-1510915933:7605..7724 | Clytia hemisphaerica | exon |
| TCONS_00011717-exon-sc0000132-1575043694:7605..7724 | TCONS_00011717-exon-sc0000132-1575043694:7605..7724 | Clytia hemisphaerica | exon |
| TCONS_00011717-exon-sc0000132-1491911889:8454..8581 | TCONS_00011717-exon-sc0000132-1491911889:8454..8581 | Clytia hemisphaerica | exon |
| TCONS_00011717-exon-sc0000132-1510915933:8454..8581 | TCONS_00011717-exon-sc0000132-1510915933:8454..8581 | Clytia hemisphaerica | exon |
| TCONS_00011717-exon-sc0000132-1575043694:8454..8581 | TCONS_00011717-exon-sc0000132-1575043694:8454..8581 | Clytia hemisphaerica | exon |
| TCONS_00011717-exon-sc0000132-1491911889:8892..9471 | TCONS_00011717-exon-sc0000132-1491911889:8892..9471 | Clytia hemisphaerica | exon |
| TCONS_00011717-exon-sc0000132-1510915933:8892..9471 | TCONS_00011717-exon-sc0000132-1510915933:8892..9471 | Clytia hemisphaerica | exon |
| TCONS_00011717-exon-sc0000132-1575043694:8892..9471 | TCONS_00011717-exon-sc0000132-1575043694:8892..9471 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000132 | supercontig | sc0000132:6727..9471 + |
Blast
The following BLAST results are available for this feature:
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