TCONS_00011716 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011716
Unique NameTCONS_00011716
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length607

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011716 ID=TCONS_00011716|Name=TCONS_00011716|organism=Clytia hemisphaerica|type=transcript|length=607bp
TTCCTTCGGCTATACCTTTACTGATCGTATCTAGCGCCCTTCTAACGCCC
AACTACGCCTTCCACGCTCCACTGGGCAGCAACTTANAATTGCTGTCCAG
CCCTCCTAAACTTTAGTGTTGTTTCGGCAGCGATCGGCGGCGGACCTGCT
CAGGACATAGGTTTGTAAGTATCCTTTTCTTATTTATAACACGATTGTAG
AGCGTTGTCATTATTAAATATTAGTTTATTGTAACTGCATAGTCTCCCGT
TCCTGTCTGCAAATAGGATTAGGTTCTACTCCCCTAGGTTCCTCTAGCCC
GTCCCTTTCGTAGTCTAGACTCACTCACTCGCTGCGTCTTATTCGTCTGC
TAGGCAGCACCCGGGTAAGCCGCCAGTACATTGGCGCCCAACGAAATTAA
ACAGtggtctttcttttgtttcttaaaGCCTTACTGGCTAATGATTACTT
TTCTTTTCACCCGAAGCTAAAGAATTAAGAAATCACTCCCGAGTCTAGGG
AAAGGGTTCTATAGGATTTCTTCCTTTCTTGGGGTGGGGTTCCAGATACT
CTGTAGAATTCCATCGCATGGACCTGTAAGGAAGGTTATCTTTTACTGCA
TATCCCT
Run BLAST on NCBI

transcript from alignment at sc0000131:487906..488512

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011716 ID=TCONS_00011716|Name=TCONS_00011716|organism=Clytia hemisphaerica|type=transcript|length=607bp|location=Sequence derived from alignment at sc0000131:487906..488512 (Clytia hemisphaerica)
AGGGATATGCAGTAAAAGATAACCTTCCTTACAGGTCCATGCGATGGAAT
TCTACAGAGTATCTGGAACCCCACCCCAAGAAAGGAAGAAATCCTATAGA
ACCCTTTCCCTAGACTCGGGAGTGATTTCTTAATTCTTTAGCTTCGGGTG
AAAAGAAAAGTAATCATTAGCCAGTAAGGCtttaagaaacaaaagaaaga
ccaCTGTTTAATTTCGTTGGGCGCCAATGTACTGGCGGCTTACCCGGGTG
CTGCCTAGCAGACGAATAAGACGCAGCGAGTGAGTGAGTCTAGACTACGA
AAGGGACGGGCTAGAGGAACCTAGGGGAGTAGAACCTAATCCTATTTGCA
GACAGGAACGGGAGACTATGCAGTTACAATAAACTAATATTTAATAATGA
CAACGCTCTACAATCGTGTTATAAATAAGAAAAGGATACTTACAAACCTA
TGTCCTGAGCAGGTCCGCCGCCGATCGCTGCCGAAACAACACTAAAGTTT
AGGAGGGCTGGACAGCAATTNTAAGTTGCTGCCCAGTGGAGCGTGGAAGG
CGTAGTTGGGCGTTAGAAGGGCGCTAGATACGATCAGTAAAGGTATAGCC
GAAGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006586XLOC_006586Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011716-exon-sc0000131-1491911889:487906..488512TCONS_00011716-exon-sc0000131-1491911889:487906..488512Clytia hemisphaericaexon
TCONS_00011716-exon-sc0000131-1510915933:487906..488512TCONS_00011716-exon-sc0000131-1510915933:487906..488512Clytia hemisphaericaexon
TCONS_00011716-exon-sc0000131-1575043694:487906..488512TCONS_00011716-exon-sc0000131-1575043694:487906..488512Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000131supercontigsc0000131:487906..488512 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.855444	0.860297	1.53799	0.720871	0.961683	1.32989	8.90757	10.6239	4.16416	4.50979	9.06396	7.70244	14.6654	11.0719	5.45176	7.28726	8.68564	10.6389	1.23185	2.09702	4.70362	6.10863	2.67308	2.06134	10.5921	14.4743	2.10542	1.76204	6.54432	7.46449
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011716 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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