TCONS_00011703 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011703
Unique NameTCONS_00011703
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length375

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011703 ID=TCONS_00011703|Name=TCONS_00011703|organism=Clytia hemisphaerica|type=transcript|length=375bp
TCTGATAGTAATTTATGTTTTGAATATGAAAATTAACATTATTTCACTCA
TGGAACAAGGCTTATCAGTGCAGACCGTTGGTTTATATTCAGAATGCCGG
GACCGAAAGGGTGGGAACGTAACAGAACACAATAAGCTTGCTCGAATCAT
GAAATGGAATGTGGAGATGATAAGTGGTTCAGAAAATCGGATATTAAGAG
AATCTGAAATTCTCAACTTAACAGTGCATTCTTTTGATGTTTGTATGAAC
GTGACTTTGATGTTGGATATAATCACCACACTGACACTTGGTGAAAAATA
CGTCTTCAAAGAGGGTAACAAAATCTACAGGGCTTCATCAATTGCTGCAA
TTTTCACATATATGACACCAGGAAT
Run BLAST on NCBI

protein sequence of TCONS_00011703-protein

>TCONS_00011703-protein ID=TCONS_00011703-protein|Name=TCONS_00011703-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
LIVIYVLNMKINIISLMEQGLSVQTVGLYSECRDRKGGNVTEHNKLARIM
KWNVEMISGSENRILRESEILNLTVHSFDVCMNVTLMLDIITTLTLGEKY
VFKEGNKIYRASSIAAIFTYMTPG
Run BLAST on NCBI

transcript from alignment at sc0000131:191962..192336

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011703 ID=TCONS_00011703|Name=TCONS_00011703|organism=Clytia hemisphaerica|type=transcript|length=375bp|location=Sequence derived from alignment at sc0000131:191962..192336 (Clytia hemisphaerica)
ATTCCTGGTGTCATATATGTGAAAATTGCAGCAATTGATGAAGCCCTGTA
GATTTTGTTACCCTCTTTGAAGACGTATTTTTCACCAAGTGTCAGTGTGG
TGATTATATCCAACATCAAAGTCACGTTCATACAAACATCAAAAGAATGC
ACTGTTAAGTTGAGAATTTCAGATTCTCTTAATATCCGATTTTCTGAACC
ACTTATCATCTCCACATTCCATTTCATGATTCGAGCAAGCTTATTGTGTT
CTGTTACGTTCCCACCCTTTCGGTCCCGGCATTCTGAATATAAACCAACG
GTCTGCACTGATAAGCCTTGTTCCATGAGTGAAATAATGTTAATTTTCAT
ATTCAAAACATAAATTACTATCAGA

Coding sequence (CDS) from alignment at sc0000131:191962..192336

>TCONS_00011703 ID=TCONS_00011703|Name=TCONS_00011703|organism=Clytia hemisphaerica|type=CDS|length=372bp|location=Sequence derived from alignment at sc0000131:191962..192336 (Clytia hemisphaerica)
TCCTGGTGTCATATATGTGAAAATTGCAGCAATTGATGAAGCCCTGTAGA
TTTTGTTACCCTCTTTGAAGACGTATTTTTCACCAAGTGTCAGTGTGGTG
ATTATATCCAACATCAAAGTCACGTTCATACAAACATCAAAAGAATGCAC
TGTTAAGTTGAGAATTTCAGATTCTCTTAATATCCGATTTTCTGAACCAC
TTATCATCTCCACATTCCATTTCATGATTCGAGCAAGCTTATTGTGTTCT
GTTACGTTCCCACCCTTTCGGTCCCGGCATTCTGAATATAAACCAACGGT
CTGCACTGATAAGCCTTGTTCCATGAGTGAAATAATGTTAATTTTCATAT
TCAAAACATAAATTACTATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006573XLOC_006573Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011703-proteinTCONS_00011703-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011703-exon-sc0000131-1491911889:191962..192336TCONS_00011703-exon-sc0000131-1491911889:191962..192336Clytia hemisphaericaexon
TCONS_00011703-exon-sc0000131-1510915933:191962..192336TCONS_00011703-exon-sc0000131-1510915933:191962..192336Clytia hemisphaericaexon
TCONS_00011703-exon-sc0000131-1575043694:191962..192336TCONS_00011703-exon-sc0000131-1575043694:191962..192336Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000131supercontigsc0000131:191962..192336 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.641164	0.416824	1.6939	0.710237	0	0	0	0	0	0	0	0	0.852836	0.738066	0	0	0.16044	0.657782	1.59033	1.90191	2.68629	1.51186	1.71534	1.33671	2.75356	2.25269	0	0	0.237214	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011703 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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