TCONS_00011691 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011691
Unique NameTCONS_00011691
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1024

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011691 ID=TCONS_00011691|Name=TCONS_00011691|organism=Clytia hemisphaerica|type=transcript|length=1024bp
AAGAATTGATGTGTAATGGTGAGGTTTGGGCACCAAAAGCGCTCTCCTTG
TTCACATGCATCGTTTCAATCTTTATCTCCTTAATAGCAAGCATAGGGAA
TGGAATCATTATTTTTGCGGTAATCAAAGATCCTTTTAACAAGCTGCACA
CACCGTTCAATTACTTTTTAGTCAACTTAGCTGTGGCGGATCTGATTGTT
GGATGTGTGGCTAGTCCGATTACAGCTTACGTTCTCTGGATGGAGTATAC
CGGCGTGTTGACAAAAACTCTCGGAGATTTGCTGCATGTGTCCTGTTTGG
TTTCAAACATGGCTAGCGAACTCAGCATAGTAGCCTTAGCTTTTGACAGG
TATTATGCCGTTTCTGATGCCATCAGCTATCGGGCAAAAGTCAGTTGGAA
AAAGTGTATTATCGCAACCGTGGTAATTTGGGTCATTTCGCTCTCTGTCC
CGTTCCTGAGATTATATCTAGGTTACATCAGATATCTGACTATCTTTGTA
AGCAGCGCCATACTGGTTGGCAGTATCACCTTGATAGTATTACTTTATAA
AGTGAGAAAAGCGATGAAGAAACAGTCAGCTACCCTAGGTCAACATTTAG
ACGACTCAAATAGACCAAGAAAAGAATTTGATATGAAACGGTTGGCAATG
GAACGGAAAGTCACAAAAGTTTTCTTCATCATGGCTCTGGTTTTTCTTGG
CATACATCTTCCGGCTGCCATTATGATTTATATTTTACGCGCTTGCGCAG
AGTGTCACTGTACGGTGCGTCATGTCTTGAGAGATCTTCAacttttgctg
acgtcagcaaacaGCACGACAAATCCTTTTGTGCTCACACTTAGCTCAGA
AATCTTTGAACGGgcagtcaaaaagattttctgcagtaaaatatggaaaa
aatacgAAGAACGAAGCATGACAGAACCGACTTCAATCAGCACGTCACAA
CAAGAGCAAAATCACAACACAGCTGAACTACAATCCATTCGGCACCTTGA
AACATGAAAGCCACAGTAACTGAC
Run BLAST on NCBI

protein sequence of TCONS_00011691-protein

>TCONS_00011691-protein ID=TCONS_00011691-protein|Name=TCONS_00011691-protein|organism=Clytia hemisphaerica|type=polypeptide|length=334bp
ELMCNGEVWAPKALSLFTCIVSIFISLIASIGNGIIIFAVIKDPFNKLHT
PFNYFLVNLAVADLIVGCVASPITAYVLWMEYTGVLTKTLGDLLHVSCLV
SNMASELSIVALAFDRYYAVSDAISYRAKVSWKKCIIATVVIWVISLSVP
FLRLYLGYIRYLTIFVSSAILVGSITLIVLLYKVRKAMKKQSATLGQHLD
DSNRPRKEFDMKRLAMERKVTKVFFIMALVFLGIHLPAAIMIYILRACAE
CHCTVRHVLRDLQLLLTSANSTTNPFVLTLSSEIFERAVKKIFCSKIWKK
YEERSMTEPTSISTSQQEQNHNTAELQSIRHLET
Run BLAST on NCBI

transcript from alignment at sc0000131:38998..40021

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011691 ID=TCONS_00011691|Name=TCONS_00011691|organism=Clytia hemisphaerica|type=transcript|length=1024bp|location=Sequence derived from alignment at sc0000131:38998..40021 (Clytia hemisphaerica)
GTCAGTTACTGTGGCTTTCATGTTTCAAGGTGCCGAATGGATTGTAGTTC
AGCTGTGTTGTGATTTTGCTCTTGTTGTGACGTGCTGATTGAAGTCGGTT
CTGTCATGCTTCGTTCTTcgtattttttccatattttactgcagaaaatc
tttttgactgcCCGTTCAAAGATTTCTGAGCTAAGTGTGAGCACAAAAGG
ATTTGTCGTGCtgtttgctgacgtcagcaaaagtTGAAGATCTCTCAAGA
CATGACGCACCGTACAGTGACACTCTGCGCAAGCGCGTAAAATATAAATC
ATAATGGCAGCCGGAAGATGTATGCCAAGAAAAACCAGAGCCATGATGAA
GAAAACTTTTGTGACTTTCCGTTCCATTGCCAACCGTTTCATATCAAATT
CTTTTCTTGGTCTATTTGAGTCGTCTAAATGTTGACCTAGGGTAGCTGAC
TGTTTCTTCATCGCTTTTCTCACTTTATAAAGTAATACTATCAAGGTGAT
ACTGCCAACCAGTATGGCGCTGCTTACAAAGATAGTCAGATATCTGATGT
AACCTAGATATAATCTCAGGAACGGGACAGAGAGCGAAATGACCCAAATT
ACCACGGTTGCGATAATACACTTTTTCCAACTGACTTTTGCCCGATAGCT
GATGGCATCAGAAACGGCATAATACCTGTCAAAAGCTAAGGCTACTATGC
TGAGTTCGCTAGCCATGTTTGAAACCAAACAGGACACATGCAGCAAATCT
CCGAGAGTTTTTGTCAACACGCCGGTATACTCCATCCAGAGAACGTAAGC
TGTAATCGGACTAGCCACACATCCAACAATCAGATCCGCCACAGCTAAGT
TGACTAAAAAGTAATTGAACGGTGTGTGCAGCTTGTTAAAAGGATCTTTG
ATTACCGCAAAAATAATGATTCCATTCCCTATGCTTGCTATTAAGGAGAT
AAAGATTGAAACGATGCATGTGAACAAGGAGAGCGCTTTTGGTGCCCAAA
CCTCACCATTACACATCAATTCTT

Coding sequence (CDS) from alignment at sc0000131:38998..40021

>TCONS_00011691 ID=TCONS_00011691|Name=TCONS_00011691|organism=Clytia hemisphaerica|type=CDS|length=1005bp|location=Sequence derived from alignment at sc0000131:38998..40021 (Clytia hemisphaerica)
TCATGTTTCAAGGTGCCGAATGGATTGTAGTTCAGCTGTGTTGTGATTTT
GCTCTTGTTGTGACGTGCTGATTGAAGTCGGTTCTGTCATGCTTCGTTCT
TcgtattttttccatattttactgcagaaaatctttttgactgcCCGTTC
AAAGATTTCTGAGCTAAGTGTGAGCACAAAAGGATTTGTCGTGCtgtttg
ctgacgtcagcaaaagtTGAAGATCTCTCAAGACATGACGCACCGTACAG
TGACACTCTGCGCAAGCGCGTAAAATATAAATCATAATGGCAGCCGGAAG
ATGTATGCCAAGAAAAACCAGAGCCATGATGAAGAAAACTTTTGTGACTT
TCCGTTCCATTGCCAACCGTTTCATATCAAATTCTTTTCTTGGTCTATTT
GAGTCGTCTAAATGTTGACCTAGGGTAGCTGACTGTTTCTTCATCGCTTT
TCTCACTTTATAAAGTAATACTATCAAGGTGATACTGCCAACCAGTATGG
CGCTGCTTACAAAGATAGTCAGATATCTGATGTAACCTAGATATAATCTC
AGGAACGGGACAGAGAGCGAAATGACCCAAATTACCACGGTTGCGATAAT
ACACTTTTTCCAACTGACTTTTGCCCGATAGCTGATGGCATCAGAAACGG
CATAATACCTGTCAAAAGCTAAGGCTACTATGCTGAGTTCGCTAGCCATG
TTTGAAACCAAACAGGACACATGCAGCAAATCTCCGAGAGTTTTTGTCAA
CACGCCGGTATACTCCATCCAGAGAACGTAAGCTGTAATCGGACTAGCCA
CACATCCAACAATCAGATCCGCCACAGCTAAGTTGACTAAAAAGTAATTG
AACGGTGTGTGCAGCTTGTTAAAAGGATCTTTGATTACCGCAAAAATAAT
GATTCCATTCCCTATGCTTGCTATTAAGGAGATAAAGATTGAAACGATGC
ATGTGAACAAGGAGAGCGCTTTTGGTGCCCAAACCTCACCATTACACATC
AATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006561XLOC_006561Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011691-proteinTCONS_00011691-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011691-exon-sc0000131-1491911889:38998..40021TCONS_00011691-exon-sc0000131-1491911889:38998..40021Clytia hemisphaericaexon
TCONS_00011691-exon-sc0000131-1510915933:38998..40021TCONS_00011691-exon-sc0000131-1510915933:38998..40021Clytia hemisphaericaexon
TCONS_00011691-exon-sc0000131-1575043694:38998..40021TCONS_00011691-exon-sc0000131-1575043694:38998..40021Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000131supercontigsc0000131:38998..40021 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.217655	0.0424496	0.365138	0.385765	0.0692317	0.139166	0.0559659	0.0523946	0	0.0908749	0	0	0.631138	0.306372	3.24937	1.78503	1.05729	1.54074	3.53403	9.65852	0.589235	0.4927	0.648853	1.1798	1.6358	1.33478	0.477517	0.509619	0.144948	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
[Close]
BLAST of TCONS_00011691 vs. Swiss-Prot (Human)
Match: 5HT1B (5-hydroxytryptamine receptor 1B OS=Homo sapiens GN=HTR1B PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.616e-16
Identity = 87/331 (26.28%), Postives = 140/331 (42.30%), Query Frame = 3 
Query:   72 FISLIASIGNGIIIFAVIKDPFNKLHTPFNYFLVNLAVADLIVGCVASPI-TAYVLWMEYTGVLTKTLGDLLHVSCLVSNMASELSIVALAFDRYYAVSDAISYRAKVSWKKCIIATVVIWVISLSV---PFLR-------------LYLGYIRYLTIFVSSAILVGSITLIVLLYKV----RKAMKKQSA-------TLGQHLDDS---------------NRPRKE-----------------FDMKRL--AMERKVTKVFFIMALVFLGIHLPAAIMIYILRACAECHCTVRHVLRDLQLLLTSANSTTNPFVLTLSSEIFERAVKKI 878
             I+L  ++ N  +I  V +    KLHTP NY + +LAV DL+V  +  PI T Y +   +T  L + + D    S +    AS L +  +A DRY+A++DA+ Y AK + K+  +   ++WV S+S+   PF               +   +I Y       A    ++ LI L  ++    R  + KQ+        T  Q + DS               + P +                   + K+L  A ERK TK   I+   F+   LP  I+  ++  C +  C     + D    L   NS  NP + T+S+E F++A  K+
Sbjct:   58 LITLATTLSNAFVIATVYRT--RKLHTPANYLIASLAVTDLLVSILVMPISTMYTVTGRWT--LGQVVCDFWLSSDITCCTASILHLCVIALDRYWAITDAVEYSAKRTPKRAAVMIALVWVFSISISLPPFFWRQAKAEEEVSECVVNTDHILYTVYSTVGAFYFPTLLLIALYGRIYVEARSRILKQTPNRTGKRLTRAQLITDSPGSTSSVTSINSRVPDVPSESGSPVYVNQVKVRVSDALLEKKKLMAARERKATKTLGIILGAFIVCWLPFFIISLVMPICKDA-CWFHLAIFDFFTWLGYLNSLINPIIYTMSNEDFKQAFHKL 383
The following BLAST results are available for this feature:
BLAST of TCONS_00011691 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
5HT1B2.616e-1626.285-hydroxytryptamine receptor 1B OS=Homo sapiens GN... [more]
back to top