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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011592 ID=TCONS_00011592|Name=TCONS_00011592|organism=Clytia hemisphaerica|type=transcript|length=1760bpRun BLAST on NCBI protein sequence of TCONS_00011592-protein >TCONS_00011592-protein ID=TCONS_00011592-protein|Name=TCONS_00011592-protein|organism=Clytia hemisphaerica|type=polypeptide|length=483bp MARWHQIVAAIILVACIACIGYFSYKYSQQNQVLKHGHYGVIIDAGGTGSRun BLAST on NCBI transcript from alignment at sc0000130:490335..497035- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011592 ID=TCONS_00011592|Name=TCONS_00011592|organism=Clytia hemisphaerica|type=transcript|length=6701bp|location=Sequence derived from alignment at sc0000130:490335..497035- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000130:490335..497035- >TCONS_00011592 ID=TCONS_00011592|Name=TCONS_00011592|organism=Clytia hemisphaerica|type=CDS|length=14520bp|location=Sequence derived from alignment at sc0000130:490335..497035- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011592 vs. Swiss-Prot (Human)
Match: ENTP3 (Ectonucleoside triphosphate diphosphohydrolase 3 OS=Homo sapiens GN=ENTPD3 PE=1 SV=2) HSP 1 Score: 165.236 bits (417), Expect = 6.657e-44 Identity = 113/439 (25.74%), Postives = 199/439 (45.33%), Query Frame = 3
Query: 243 QQNQVLKHG-HYGVIIDAGGTGSRLYVYEYRSEDD-----IRNIFSKKCEKQGLTQYSNITELRPLLIQ-CLHDAEAEIPKDIIKSTPLFMKATAGMRKLKLQDGTKYKNVWSEVRKILSDGNFPVSTVGTIPGKDEATYSWTTVNK--------------VFPSK-ESNGIIEIGSTSLQIAFAPASGTNLPAAYSSEVDINGGNYKIYATSYLCLGKEEFMRRYYAELVRDANYSTTVDNPCGNKGYELNLTEQYLWEKQPCISGAFANSFLGQSIPSDPSSGKLYTMKGSGDYTQCQNNVQKLFDIKKC-NQTSCGMFDVFQPQIHGKFIAIGGAAYYASKFLNLPNDFNLTTFQQHLKALCESNVQQVE-QREGFGK-YSFTYCLSNSLTNHVLQNVVQVDTTIPGNFMFT----NKKTSWTLGSIIKDKDQLSA 1472
+ +VL G YG+++DAG + + +YVY++ +E + + F + G++ Y N + P + C+ + ++P + STP+ + ATAGMR L+LQ+ T V ++ F I G++E Y W T N V P E+ G +++G S QI+F +L + +V + G Y +Y S+ C G+ E +++ A L++++ + NPC + Y ++ T ++++ + P + + T +G+GD + C+ V +FD K C +Q +C V+QP+I G F+A G YY + LNL F+L TF C N Q+ F + Y+ +YC S + H+ N + F N +W+LG ++ +Q+ A
Sbjct: 46 HKQEVLPPGLKYGIVLDAGSSRTTVYVYQWPAEKENNTGVVSQTFKCSVKGSGISSYGNNPQDVPRAFEECMQKVKGQVPSHLHGSTPIHLGATAGMRLLRLQNETAANEVLESIQSYFKSQPFDFRGAQIISGQEEGVYGWITANYLMGNFLEKNLWHMWVHPHGVETTGALDLGGASTQISFVAGEKMDLNTSDIMQVSLYGYVYTLYTHSFQCYGRNEAEKKFLAMLLQNSPTKNHLTNPCYPRDYSISFTMGHVFDSLCTV----------DQRPESYNPNDVITFEGTGDPSLCKEKVASIFDFKACHDQETCSFDGVYQPKIKGPFVAFAG-FYYTASALNLSGSFSLDTFNSSTWNFCSQNWSQLPLLLPKFDEVYARSYCFSANYIYHLFVNGYKFTEETWPQIHFEKEVGNSSIAWSLGYMLSLTNQIPA 473 The following BLAST results are available for this feature:
BLAST of TCONS_00011592 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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