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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011567 ID=TCONS_00011567|Name=TCONS_00011567|organism=Clytia hemisphaerica|type=transcript|length=449bp
ACGTCGAGAATAATTCTGCTGAAACACTAATGTTTGTCGTTCGATTGATA
AGTAGATCCATGCATGCTTTAACCGAATCTGTTTGGGAGGTCATCTCCTG
GAAATCCAAATCACGTTATGACACAGCCAGTGATCAATACACTCGCATCT
TCATGCCAAAACTATTTATCGTGTCCTCTCTGGTCATGGCTTTTAGCTAT
TTCAATGATAAGTTAAACTGCATGGTTAGCAATAGACTTGATATGTCGAA
AGAATTCGTCCAAGAGACGTGTTGGATTCAAGGTTTTTACATTTACCATG
AGATGCACACAAAACTAAACGAATCTTCGTATTATGGAATTCCTGAGTAT
ACTGGCTACAATGGAGTGAATCGCAAAGGATTGTTGTGCTCAACCGTTGA
TCGAGCTGGCGGTAAGAATTATGAATGCATCCCTATGATACGAAGGTAA Run BLAST on NCBI protein sequence of TCONS_00011567-protein >TCONS_00011567-protein ID=TCONS_00011567-protein|Name=TCONS_00011567-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
VENNSAETLMFVVRLISRSMHALTESVWEVISWKSKSRYDTASDQYTRIF
MPKLFIVSSLVMAFSYFNDKLNCMVSNRLDMSKEFVQETCWIQGFYIYHE
MHTKLNESSYYGIPEYTGYNGVNRKGLLCSTVDRAGGKNYECIPMIRR Run BLAST on NCBI transcript from alignment at sc0000130:284292..286943- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011567 ID=TCONS_00011567|Name=TCONS_00011567|organism=Clytia hemisphaerica|type=transcript|length=2652bp|location=Sequence derived from alignment at sc0000130:284292..286943- (Clytia hemisphaerica)
ACGTCGAGAATAATTCTGCTGAAACACTAATGTTTGTCGTTCGATTGATA
AGGTAAATTTAGTTATTTGCCCAACATTTTTTTCAGTTGAGAAGAACATC
AGAGTTCATGACCGAGATCATAACATATATAAGTGCGTAAGATGGGTGGA
ATATATGTGCGTAAGATGTGGGTGGAATATGCAAAAAGGATCAGGTTTTT
TAGGGAAGGCTTGAAACACTCCTGCCTCATAGCCCTTTTCTTATAACTTT
TCCCATAGCGGAGATAAAAATTTCTATAAAGTCTTAAAGGGGACAGAAAT
TTTGTTGTTCTACGCTTAAAAAATCCAGCAGAAATGGTTTTTGACAATAT
TTTACACTGAATTCCAAATGAAATTCAATTGAAATTGTAGGGTATTTTTT
TACCAGGAAGAAAAATTGGCCAATTTTGTTAGTAGGTTTGGGGTCCCGTC
GGGTCTGTGACACGAGGATGTCAAGTTAGAGAATTGTTAATTCACACCGT
CAGTCGCTACCACTACATGAAAAAGGTTTTCCCGTTCGGGAAATATTCCC
CGTTAAGGCAATAGTTGCCTTTCCATATACAGTGATCCCGACTGACCGTC
AGCCAAGGACCAAAAACGTGAAGTCAGCATAAAAATGTTTGGGTGGGTGA
CGAACAAAGCAATGGCTGAAGGGTAATATAATGCAGTTTCCCTGAAAACC
AAAGCAACTTAATTTTTGACGTCAAAAGATTAAAGAGTGAATTTCTAATG
AATAGCTCCATTAATCATCTTTTTTATAAAAGCCGCTCTTTTGCATGAAG
ATTAATGGCTAATTTTACTGATAACCTTTCCAGCTCAAAAAAACAATATA
AAATCTGTGCTTGGACTGTCTGTAGCATTTTCGGAATGTAGTAAATTTAT
TCCAAAGAATATATATGAAAGTTTTACGAACGAATTTATTGTCAACTTGA
AGCACCTTGACAACACTAAAAAAGAAAAGCATCACACCCATTTACCTTGA
ATGAGAAAAACTTTTTTCATTTTTACTTTTCTTTTCTTCTTTTGTTACTG
TGACATTAAAATTTAAAAACACCAAAAAAAAGAAGATTTTTGAAGGAAGG
GTTAATTAGACGTCCGTCAATTTTTTGAAAACTTCTTCAATCTTGAATTA
TTAGCGGTGAAGCAGAAAAACAAAGAAGAAGAAAATTAACATTAACGAGA
AGTCCTTCATTTTTTGACAATTTTTTGATTCAAGACTTTGTTGGATGAGA
TTTCCATCAAATTAATTGGTGACCCTTTAATCATCACAATATTTTGCTCG
ACCAAAAACAATGAGGAAACATCGAACACAACTCTAAGGAAATGAACTGC
AAAGCGTAAAACATATTTTTTCACTTCTTCATTTTGCCTAACCTTTCCCA
AAATCAATTTAATACATTGTATCTGAGGGGATTTTGCTTTACTCAATTTC
TTTTTAACCGACAAATCTAGACAGGTAAACAGACAGAGAGACAAAGTATT
TAGATTATTTTGACCTTTTATTAAACCTTTTATAATTTGCTTCACCAGTA
CTATTTCAATTAACGGTTTTAAGTTTAGGAAAGATTTTTCACAAACGTTC
GCTTTTTGTAAAGACATTTGTTTTTCATGAAGTCAGTCAGAAAGTTTGTA
AAGTCAATCTAGATGCAAAACTTTTTACTACTGTATAGAAGGTTTGTCAT
TTAAGAAATTTCATAAGGGGACAATTATTATTGTGGGTACGATTTTTCTA
GCATATTTTGGGAAAGTTTCGGTCTTACCGAAATTGTAATAAGCTTAGTG
GCGTGCCAAAGAAAAGAAGATGTTTGTGAGCTTTTTATCTAATTAAGAGG
AAGGTAGAATGAGTTAAAAAGGTTTGGTATGACTTATTGAAACCTACTCT
TCAAACAGAGAGTCAGAAAAATGAGACTGAAATTTTGTTTCTTTTCTCTT
TGCAGTAGATCCATGCATGCTTTAACCGAATCTGTTTGGGAGGTCATCTC
CTGGAAATCCAAATCACGTTATGACACAGCCAGTGATCAATACACTCGCA
TCTTCATGCCAAAACTATTTATCGTGTCCTCTCTGGTCATGGCTTTTAGC
TATTTCAATGATAAGTTAAACTGCATGGTTAGCAATAGACTTGATATGTC
GAAAGAATTCGTCCAAGAGACGTGTTGGATTCAAGGTTTTTACATTTACC
ATGAGATGCACACAAAACTAAACGAATCTTCGTATTATGGAATTCCTGAG
TATACTGGCTACAATGGAGTGAATCGCAAAGGTAATGACTTAATTGATTG
TTCGGTGTGGAAATCACTTTTGACAACTAACAACACTTTTCCCTGTTTCA
ATTTTAGACCCAAAGACTGATACTGATCTTTTTTTCCTGACTATCTCTGA
TCATTGAAGCATCGTGTTCCCATCCTTCGAAATGGACCTTACCTTTCCAT
TTCTGATACAGCAATCAGCATCACTGAGTCAGTGAGACAGGGTTTGCAAA
CTTTAATAAAGCTATTTCAATTATCAAGTTGTTGACAAAAAAGAAATGTC
TTAGTTTTTCCTTTCTCGTTTCATTTGGTAGGATTGTTGTGCTCAACCGT
TGATCGAGCTGGCGGTAAGAATTATGAATGCATCCCTATGATACGAAGGT
AA Coding sequence (CDS) from alignment at sc0000130:284292..286943- >TCONS_00011567 ID=TCONS_00011567|Name=TCONS_00011567|organism=Clytia hemisphaerica|type=CDS|length=1341bp|location=Sequence derived from alignment at sc0000130:284292..286943- (Clytia hemisphaerica)
GATTGTTGTGCTCAACCGTTGATCGAGCTGGCGGTAAGAATTATGAATGC
ATCCCTATGATACGAAGGTAATAGATCCATGCATGCTTTAACCGAATCTG
TTTGGGAGGTCATCTCCTGGAAATCCAAATCACGTTATGACACAGCCAGT
GATCAATACACTCGCATCTTCATGCCAAAACTATTTATCGTGTCCTCTCT
GGTCATGGCTTTTAGCTATTTCAATGATAAGTTAAACTGCATGGTTAGCA
ATAGACTTGATATGTCGAAAGAATTCGTCCAAGAGACGTGTTGGATTCAA
GGTTTTTACATTTACCATGAGATGCACACAAAACTAAACGAATCTTCGTA
TTATGGAATTCCTGAGTATACTGGCTACAATGGAGTGAATCGCAAAGGTC
GAGAATAATTCTGCTGAAACACTAATGTTTGTCGTTCGATTGATAAGGAT
TGTTGTGCTCAACCGTTGATCGAGCTGGCGGTAAGAATTATGAATGCATC
CCTATGATACGAAGGTAATAGATCCATGCATGCTTTAACCGAATCTGTTT
GGGAGGTCATCTCCTGGAAATCCAAATCACGTTATGACACAGCCAGTGAT
CAATACACTCGCATCTTCATGCCAAAACTATTTATCGTGTCCTCTCTGGT
CATGGCTTTTAGCTATTTCAATGATAAGTTAAACTGCATGGTTAGCAATA
GACTTGATATGTCGAAAGAATTCGTCCAAGAGACGTGTTGGATTCAAGGT
TTTTACATTTACCATGAGATGCACACAAAACTAAACGAATCTTCGTATTA
TGGAATTCCTGAGTATACTGGCTACAATGGAGTGAATCGCAAAGGTCGAG
AATAATTCTGCTGAAACACTAATGTTTGTCGTTCGATTGATAAGGATTGT
TGTGCTCAACCGTTGATCGAGCTGGCGGTAAGAATTATGAATGCATCCCT
ATGATACGAAGGTAATAGATCCATGCATGCTTTAACCGAATCTGTTTGGG
AGGTCATCTCCTGGAAATCCAAATCACGTTATGACACAGCCAGTGATCAA
TACACTCGCATCTTCATGCCAAAACTATTTATCGTGTCCTCTCTGGTCAT
GGCTTTTAGCTATTTCAATGATAAGTTAAACTGCATGGTTAGCAATAGAC
TTGATATGTCGAAAGAATTCGTCCAAGAGACGTGTTGGATTCAAGGTTTT
TACATTTACCATGAGATGCACACAAAACTAAACGAATCTTCGTATTATGG
AATTCCTGAGTATACTGGCTACAATGGAGTGAATCGCAAAGGTCGAGAAT
AATTCTGCTGAAACACTAATGTTTGTCGTTCGATTGATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011567-exon-sc0000130-1575043694:286892..286943 | TCONS_00011567-exon-sc0000130-1575043694:286892..286943 | Clytia hemisphaerica | exon |
| TCONS_00011567-exon-sc0000130-1575043694:284663..284988 | TCONS_00011567-exon-sc0000130-1575043694:284663..284988 | Clytia hemisphaerica | exon |
| TCONS_00011567-exon-sc0000130-1575043694:284292..284362 | TCONS_00011567-exon-sc0000130-1575043694:284292..284362 | Clytia hemisphaerica | exon |
| TCONS_00011567-exon-sc0000130-1510915933:286892..286943 | TCONS_00011567-exon-sc0000130-1510915933:286892..286943 | Clytia hemisphaerica | exon |
| TCONS_00011567-exon-sc0000130-1510915933:284663..284988 | TCONS_00011567-exon-sc0000130-1510915933:284663..284988 | Clytia hemisphaerica | exon |
| TCONS_00011567-exon-sc0000130-1510915933:284292..284362 | TCONS_00011567-exon-sc0000130-1510915933:284292..284362 | Clytia hemisphaerica | exon |
| TCONS_00011567-exon-sc0000130-1491911889:286892..286943 | TCONS_00011567-exon-sc0000130-1491911889:286892..286943 | Clytia hemisphaerica | exon |
| TCONS_00011567-exon-sc0000130-1491911889:284663..284988 | TCONS_00011567-exon-sc0000130-1491911889:284663..284988 | Clytia hemisphaerica | exon |
| TCONS_00011567-exon-sc0000130-1491911889:284292..284362 | TCONS_00011567-exon-sc0000130-1491911889:284292..284362 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000130 | supercontig | sc0000130:284292..286943 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000990 | Innexin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005921 | gap junction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005921 |
gap junction |
Blast
The following BLAST results are available for this feature:
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