TCONS_00011493 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011493
Unique NameTCONS_00011493
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length937

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011493 ID=TCONS_00011493|Name=TCONS_00011493|organism=Clytia hemisphaerica|type=transcript|length=937bp
ATTCAACGACATGGATTGGCCTAAAAATGTTTACATCGATACACCACGCG
TAGCAGAGCGCGATCGCTTCTCCCCTTACCCCATGGTGTGTGTCAGTAAG
GCTCTCTCCCTCGTTCTCAGTTGCATCAAAGTACCCAAGAAAAGACATCT
CGTCAATTTGCATGCAGGTCTGCTGGGCAAGATATTGATGGAAGATGTGA
GAGCCAAAGAACCTTATCCTCCGTTTGCTGCTTCTGTAAAAGATGGTTAC
GCTGTCATTGCTTCTGACGGTGCAGGTGTGCGAACAGTACTGGAACCCAT
CACTGCTGGAAAAGTGCCAGTGAAGACGATACGTACAGGACAATGTAGTC
GTATAAACACTGGAGCACCATTACCACCCGGTGCTGACGCCGTCGTTATG
GTGGAAGAAACTGAACTCGTTGAATCTAAACAAGATGGTCGCGTTGAAGT
GAGCGTCCGAATCAAGACCGCGCCGCGTGTACTTCAAGAAGTCAGGCCTG
TTGGATTTGATATCAAACAAGGTGAAACCATTTTGAGCTCTGGTGAAAAA
CTAGGTCCAGCTGAACTTGGTCTTCTAGCAATGGCTGGTGTACATACTgt
ATCAGTGTACACTCCACCATCCATTGGAATCATCTCAACTGGTGATGAGT
TGGTGACACCAGGTTCAAAACGAAGTGAGGGGCAAATCTTCGATTCGAAC
AAAATTGCATTATTGACAGCGATACGTGAACAGGGTTTCAATGCTGCTGA
CCTTGGAACCATCTCTGACGAttattcgTTGATGAAAGAAAAACTGTTGA
ACGTGATTGACGATGGAACACATCGAGTCATCATCTCTACCGGTGGCGTC
TCCATGGGAGAAAAGGACTTAGTGAAGAAGttccttgaaaattttggcGA
AGTGAAGTTTGGAAGACTGAACATGAAGCCAGGGTAT
Run BLAST on NCBI

transcript from alignment at sc0000128:343863..353056-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011493 ID=TCONS_00011493|Name=TCONS_00011493|organism=Clytia hemisphaerica|type=transcript|length=9194bp|location=Sequence derived from alignment at sc0000128:343863..353056- (Clytia hemisphaerica)
ATTCAACGACATGGATTGGCCTAAAAATGGTTTGCTTTATTTCAATGTTT
GAAATTTTAAAGGGGCAATCAATGCCAACACTGTGTACCTCTCTTAGAAG
CCTTTTTGGTTTTTTATCTCGAAGACTGCGAATAAATCGTGTTTTTAAAA
ATCAACTCTTATCTTATCTGATATGAGTGGAGGCTGAAAATGCTTATTAT
TATAAAAGTTGTAAATTTTTCTGATTTTTTATTTATGCTCAAAAAGACAT
GTAAGAGGTCGAAATATCCTTCAAACAAAAATGTGTCATGTTTTATTCTG
ATATTTGGTTACACATCTGATGGCTTTTAATGTTTCACCTTATATGAAAT
ATTCTAACATTCTACATTTTAAAGATTTTTAACAATATCGACTTCAGCCT
CTCAAAAGCCTTCCCCTTTGTCTTCTTGCGTTTAACTTTATCTGTAAAAT
CTTCTTTTTTTTTCGTGCTTCAGTTTACATCGATACACCACGCGTAGCAG
AGCGCGATCGCTTCTCCCCTTACCCCATGGTGTGTGTCAGTAAGGCTCTC
TCCCTCGTTCTCAGTTGCATCAAAGTACCCAAGAAAAGACATCTCGTCAA
TTTGCATGCAGGTAAGAGAAAATCACTTTTCTGATCTTATAAAAGAAAGT
CCTGGCTTTCAAACTTTCGTATGTGGAATTCTTTTAGATTTCTATGTGCA
ATATACCTTTTTTATAAGAACAAACTATATAAGAACATAAGGCTTCGAGG
GCCGAATAAAACAATATTAGGAACAAGTTAGGAATATTTTAAGTCTTTGC
GGGCTCTAACACCTGATTTCTTAAGAAAATGGGCAAAAATACTCACACAA
TGGTGAAAGTAAGAACATGTTAAGAGGCTTAAAACTCAAAAAGTTGGATG
TTCTTATAAGAAAACGTGTATCTTTGTCTTTCCTTGAAGGGAGTGAAATG
ATAAAAAACTATAAACAAAACCGTTAAACCAACTGATTCACCGTAAAAAA
TTCGCGAATTCATTATCTCTATCCCAATACGCGATTTTTTTATCAGTGTG
ATGTCGAAAAAAAAAGCCGTGGTCGTCTGGTATAGGCAAGGCAACAAGTC
TATGAAAAAAAGAGATAAAAACTACAAGCATCCCGAAATAACGCTTGCGA
CACTTTTAAAATACACGTTTTTTTTTTTTAAGAAACTAGTTTTACCAAGC
AGCCTCAATGTTTCTTAAGAAATCGGCCTTTTGAGCCTTAAATGTTTCTT
ACATGTTTCTAAACTTTTTGACGTAATCAGCCTTATGGAAGGCTGGATTG
GAAGGTTCTTAAAAAAACTGAATTAGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTTC
TCATTCTCAGCCTCAGCATGTTTCTTAGATGTTTCTTAGTTTTTAGGCAT
TCTGAGCCTCATGTTTCTTAAAAGTGTGTTTCTTAAAAAAAAAAAGTGTA
GTTGAATCGATCGTGAAATACCGACACAATGTTTTTATGGGTTTTTAAAT
CAAATATCGACAGACACGTGTAAAAAAGGTTTTCCACTGCAAGCAATGAA
ACTCCTATTACATTGTGTAGACATAACAACGAGATTGGACCTCGTTATAG
TGAAAAACTGCAATTTGGTTTAATTTTGATCCAATTAAATCAGAGTACAA
TGCCGACAGACTCTTATTACGCAATCACGCCTATTTAGAACAACTTGAAT
GCTAAACTTCTACTAATACCTAAATACGTGGGAAATTTTGATCAGGTCAT
TGAAAGTTTCTGCAATATTCTTTAAAAAAAGAAATACTATTATTTTTTCA
CCGAGTCTCCTGAATACCTTTCGATTTTCTTTCCTTACTTCTTTCAAAGA
AAAATACATACTACCATATTTTGAGAAATAAGCACTAGGGCGCCGGTTTT
ATAACTTTGGAAGGTTCTATCGGGAGAAGAGGGGTGGGGTAAGAAACGTG
CGAGGAAGAATTAAGGGATATGTGATGTTTTTGCATCTTATTTTTCTTAA
TTTTCTAATAAGCACTGCGTTTGAATTTGCGGCGCGTATTAGAGGGCGGC
GTTTGAATACAAAATCTACGTGCGTCGCTTAACGAAGGAAACACCATAAC
CCAACAAGTGGGAATGGCCGTAAATGAGATACGCCGTGACCTCTGCCGCC
CTTTATTATTTCCCTCTTGAAAACGAATCTTGAGAGTCGAGAGCGACAAG
GAAAACTTATTTTGGAATAGGTTCATGTGCATTTGAAATTTTGAAATTTC
ATGATTTTTAAATATTGTGCTCTTTCATTAACTATCACCATTTTGGTAGG
TCTGCTGGGCAAGATATTGATGGAAGATGTGAGAGCCAAAGAACCTTATC
CTCCGTTTGCTGCTTCTGTAAAAGATGGTTACGCTGTCATTGGTAAATAC
GGTTTCTTTCTAAACATCCAGCACATCGATTTGATTTAGTTTCTTTGTTT
AAGGAGCGATGGTCTAGTAGTCTAAGGCGTTGTTTTCGCAAACTAGTGGA
CTACAGTTCGACGAATTCTCGTTTTCCAATGTTCCGCTCCGTTCTGTTTA
CATTATAAACGAGTTTACGTGTCTACTCTTTTGAGGATGTTGGAACTGCG
GGAGTGACTCGAACGATTTGGCACGACCTGCAGTTTTTATCCGCAAAATC
AAGGATTGTAAAAGCACTGATTTACTGTCGTCCTTAGTTAGTCAGGACCT
AGGCAAATCAAAAACTAACCACCTCCGCTGCATAAAACACGTCATACATA
AACGCTCTATATATTCGGTTCCTAGTCAGTTGTCCATGGGTACCGTGAAA
CTACTCGAAGAACTGCATCTAGAATTACTAAATATTTGGCTGTCTACAAA
TATTGAAGTTACAAGAGTCTTACTCTGGAGTGTTCTAGCTTTACAAGATT
TCGCGTGCTGAAAGGAATAATAAGTACGATGCTATTGTCCCTTAAAGGGA
TGGTAAAAGCGGGAAAATATAGTGCGTAGTTTACAGTCGTATATAGAAAA
AAAATCGGTGACGATAGAGTTTCGGACAAACGACCGTCAAAAACTCTACT
GATTGTTTTCGGTGTAAAAAAACCGGTTTGCGAATTCTCTTCGGCTTTGA
GCTTTTTTCTTAGATAATGATTTTCCTTAGACTATAGCATAGTCTATACC
AAGGTCAAATCATTTACATCTCATTCAATCACTTATACTAATGTCTTGTT
CATTTGTAGCTTCTGACGGTGCAGGTGTGCGAACAGTACTGGAACCCATC
ACTGCTGGAAAAGTGGCAAGTTTAAAATATTTTCACTTAAAAATTGCGTT
AGTTCAAATTTTGATTTACCAGCCTGGGACGAGTCTTTCGGTGGTCAAAA
ACAAAAAAAATCTTACCTGATCTTCTTTTATATTTCAAAACAAATATCCC
CTACTGGCTGCAGGTAACGTTGGTCACACAGAATAGTCAAATGCTATCAA
ATAAAGGCAGGCGCTACCTCTCTTTGCATATACCTAACCTTAGACTGGAG
TCGTTTATAATGCGTGTAATACAGAAGTATAGGCGTTATATGATAATACG
ATTATTAATTGTTATGGGGTTTAGTTTGTCTACTAAAATTTGTTCCCTCC
ATTACTTTTTGCTTTATTTCTACTATGTCTGAATTAGTAGTCTAGCTTGC
TAGACTGACCTAACCAGGATCTTTTTGAATGAAGGCTATAGAAACCTTTT
ATTGACGTTTCATCTCTTCTTTGTTGCGTAGCCAGTGAAGACGATACGTA
CAGGACAATGTAGTCGTATAAACACTGGAGCACCATTACCACCCGGTGCT
GACGCCGTCGTTATGGTGGAAGAAACTGAACTCGTTGAATCTAAACAAGA
TGTAAGATGAGATTCCCTTTTATGACCTCTTTTTCCCCTTTTGATTGGCT
CAACTAGGTTGGGTAACAATCATGTGAAGACGATGCATTGTAACAGTTTT
TACAAATCAAATTTTAAAATTTTCAGAAATTTCTTCTGAACTTCCAAATC
GCCTCTGGATCAACGATACATTGTTCACGCATTACAGAGCTTATTATATT
TTCTAAGACTATGTTTTGATATAACAGGCAACGTTGTGGCATTTTACGAA
TTTCAAAATAGAGATTTGAATTAGTTCGGATTAACGAGATATCCTACTGT
GTATTTTCACTTTGTCACTTATCAGGGTCGCGTTGAAGTGAGCGTCCGAA
TCAAGACCGCGCCGCGTGTACTTCAAGAAGTCAGGTATTATAATTTTTCG
AGACTAATAGTCTAGGTCACCAACTTTTACAACGCGTTTATTACTAATGT
AATGAAATTAAGAAAACGTGGACACTTAATTAATTTTATCTCATGTTATA
AAAGTAAATTAGCATTCATTAAAGAAATTCGAATTCCTTTTCGTAACTTC
TTTTGGATTTAATAGTGACCCGCTGATCTCTATCTAAACAAGACAAATTA
TAGTCTGCAATCGATATCTCAGTTTTCTGCCCCCTTAATTCTTGTAGACA
AATTTTTGGCTTTTGGAACTAATTTTCGCGGGAACTAATTTTCGCGGTCG
AAAAAAAAATCCGAAAAATTACATTTCGCGGGTTTAAATTTTCGCGTTTT
TTTTCATTCTTGAATTTTCGTGGGTTTTAATTTTCGCAATTTTGCCCTTT
TTTGGACAATTTCTTTCATTTTCCTAGGGATTTTTCAAATTTTTCGATAA
AATTGGAAAAAATTGTTTTTTGCGGGAATCAATTTTCGCAGTTTTTAACT
CTCAAAGTTTTTCGCGGGCTCAAATTTTCGCGATTTTGACAAAAATTAAT
TCCCGCGAAAATTAGTTCCAATAAGGTATACGTTTTTTTTAGAACAAACT
ATATAAAGAACATATAAGGCTTCGATGGCCAAAATATTAAGAACAAGTTA
AGAACACTTGCCGACTCGAAAACGGCCAATTTCTTAGGAAAATGGACCAA
AATACATATAAAAATGGGGAAAATGAGAACATGTTAAGAACATTTTTAGG
CTTTGAAACTCAAAGAGTTAAGAACATCCGAAAGCTTCAAAATTTTTGGA
TGTTCTTATAAAAAAAACGTGTAGGTACACACCTTATGTATGAGCCCTTT
ACACGTCAAACTTAGTTCAATGTTAGTTTTGGGTGTCCAATTTTCTGATT
TTAAAATGTTTTAGTTATTCCTCATCTTTTCATAAACAGGCCTGTTGGAT
TTGATATCAAACAAGGTGAAACCATTTTGAGCTCTGGTGAAAAACTAGGT
CCAGCTGAACTTGGTCTTCTAGCAATGGCTGGTGTACATACTGTAAGTCA
ACTTTGATATCCCCTTTAAGAAATCTTTTTTGTTTTTGACCGTTTTGAAA
TTTTGAAAATATAGCTTCGATCCAATCATCAACATCCCTCATCTTTTTCT
ATTTAAATCCCTCATCCGAGTGAAATTCAGCTTGTTGTTCTGTCACCGCT
TTAGATTTTCCATTGGGCAGCTTTCTGGTAACCAGTGAATTCCAATTTTT
TGAATCTTTTCAAAACCAACTCGCCGGTTGTTCAGTACCCACGATAAAAA
AAACGAGGGTGTTTCAAAGGTATCAGTGGACGACCAAATTTTTTGATCGA
ATTTGAAAAAGTTTTGACCACCATATTGGATTTCTTTTCTTTTCTATTTT
TCAGGTATCAGTGTACACTCCACCATCCATTGGAATCATCTCAACTGGTG
ATGAGGTATTTCATTTCTTCTTTCTTCATTTTCACTTTCAAAAAATATCC
TAACCGACTTTTAAAGGAAGTGATTAACACGGACATATTTATTTTGTGGA
TCCATGAAAATTCTACCTTAAGGGAGCTAATTTTCGCAGGAACTAACCGC
GAGAATTAAAACCCAAAAATTACAAATTTAGCCATTTATCATCTAGAAAT
TTGAAAATTCCTAGGAAAATGAAATGGAAAATGAGGCAAAACCGCGAAAA
TCGATTCCTGTCGAATACGATTTTTTAGAATTTTTTTTTCGACCGCGAAT
AATAAGTTCCCGCTAAGATTTAAGGTATTTTATTGGATGAAAGATATTTT
TTGCCAAATACTGCTAATGGTCTGGTATAGCACGGCTTTGGTGAAAGTAT
GAGATATTTTAATTTTAGTGAATGGCGAGGCCTATGTTTCCTACCGATTT
AGGATATGAATTATTATTAATGGGACTGTTCACACAACAGGGTCGATTCT
TACTCAGAGACATTTTAGAACTTGGTGAGAATTTCGTGCGACTAAGAACG
TTCAATTTGAATGAAAACTTTCGTCCATCTCATCATGTGCTCACATATAG
TATATATATATAACGATATTCAAGATTTATCAATAATTTTCCCACGAAAA
AATGAAATCAGGGACATTTATACGTTAAGTGTGAAAAGTGGAGTGACCGC
CTCTTCTCAAAGCTCTTTTTGGACAGCTCAGTAGTTCTCTTTGTCAGGGA
ATCTCGTGTCCAGAAAATTTTGTGCGTGAGACCGTTTTGCGGTCGATATG
TTGTATGTTATAACGGCATTTAGTTTTGCTAATCAGCAAGAATTACCTTA
TTGGAACTAATTTTCGCGGGAACTAATTTTCGCGGTCGAAAAAAAATATC
CAGAAAATTGCATTTCGCGGGTTTTAATTTTCGCGGTTTTTTCCATTCTG
GAATTTTCGCGGGTTTTAATTTTCGCGGTTTTGCCCTTTTTTGGACAAAT
TTCTTTCATTTTCCTAGGGGTTTTTCAAATTTTTCGATAAAATTGGAAAA
AATTGTATTTCGCAGAAGTTAATTTTCGCGGTTTTCAGCTCTCAAAATTT
TTCGCGGGATCAAATTTTCGCGATTTTGACGAAAAACCGCGAAAAACGCT
AAAATTAAAACCCGCGAAAATTAGTTCCAATAAGGTAGTTTATTTAGTCA
GAATTAATTTACATTTAAGGCTCACTCGCTAAAATTGTGAAATTTTGCGC
GAAACACGAAAATCTGTGACATTCATGTAGTTAAGATCATGGGGTCATGC
GAGAATTTTTTTTATAGTTCGCCATGTCGAGAGTCATTGATAAAAAAAAG
TGACATGAGATTAATGTCATACTCCGATCATTATAAGACCATTAATATGT
CAAAGAAATATCTCTCGGGTATAATTTATTGATTTTCATTTTTGAGTCTT
AAAAGTTTTACAAAACCTCTCACGGAAATATAATGGGGGTGAATTAAAAG
AGAACATTTCAAACATTCTGACAATTCGTGTACTGAGTCACGCTTGAAAA
TTCCAAATATGGGTTTTATATCTGGAATTTTTAAAGTCGTTGCTCGGTAG
CAAAAAAATGTTTAAATCAAACCACCCAAAAACTTTCGCAATAGTTTCGA
AAGGGGATGCTGCAAGTATTCTCAAATAATTCGACTCTTAAAGTAAAAGT
GACGAAATTTTTAGGTAAGTGAAAAAACTTATCGTCGTCAAAAACTTTTC
GGGTCAGCTTCAAGGGGCAGTTGAAAAGTATTTGCAAAAAAGTAACGAAG
TTTTCCCCCGACGAATATTTTATCTGACGAAAAACTTTAAGTTTTCCCCT
TTAATAAGCTACCACTCCAGGGTTTTCTACCTCGTCTTAATTTTTGCTTG
AGTCGAACATTTTCAATATATTTCAAGGAATCTGCTCGCACATAAACAAT
GCTCGGAATTTGTTTTGAATTAGAAAATTCGCAGTAAGAATATTGAATTC
GTGTTCGAGAAGTTCACTTTAATATCAGAAAATTTTGCGCTCAAAGAGTT
TAGTGACTCCGGCTGTTCTTTAATGAAATTTAATTTCGTAAATGAAGCAA
AAAAAGAACGTCCCTGGCATTAATATCTCTTGTTTTTGTTTATCTCATAG
TTGGTGACACCAGGTTCAAAACGAAGTGAGGGGCAAATCTTCGATTCGAA
CAAAATTGCATTATTGACAGCGATACGTGAACAGGGTTTCAATGCTGCTG
ACCTTGGAACCATCTCTGACGAGTAAGTTATATGATGCGGATATTTTAAA
CGTATCTTCTTTATTCTTGAAGAATGAATCTTTAAGAAAACTTTTGAATT
CTAATGGTGATATTTCAATCGGTTTGTTTCCGCGATGAATGGAGTTCTTC
GTTTATTTCTTATCTTACGCAAGACTAAATCCGACGTACCAGGCACTTGT
ATGAGTTAAGTAAAAAGTTACTCAAATCTGGATTGCTAAAACGTTAATAT
GAATAGTGACTTTCCGGAGGGCTTACTTTGGACCACGTGAATTAAAAGTT
GTTGTTCTCTCTTCATTTTTTCAGTTATTCGTTGATGAAAGAAAAACTGT
TGAACGTGATTGACGATGGAACACATCGAGTCATCATCTCTACCGGTGGC
GTCTCCATGGGAGAAAAGGTAGCCATATTCGTGCCTAGAACCTTTTAGAT
ATCTTCTCCGTCTGTAAAATTATTTGTTAAAACCCTACTTTTACGTTCTT
AAGCCTAGATTATGAGAGTGGTCCTAGAAGATGAGAGGCTTAAAAATGGG
GTTAACGCTTCCAGGAAACCTGTTCAACCTAGAACTAAGTGGACTTATAG
AATTATAGTAAATAGGCGTAGTAGTGTAGTGGTCATCGTTCTTGACTTCC
GTGCTGGAGGTCAGGGTTCGATTCCCACTCGGTGCTACGATTCAATTGGC
AAGTGAATGTACCTTGGCCCGGGTCAACCCATACCATGTGAGGGGAATAG
GAGGGGAATAGGGTACCATCACTCTGATACAAGAGTATGGGGAGATATGC
CGGACATTGAATGTGGTGTGGTGATGGTACTCATATGTTCAGTACCTGCG
AGAACGCAAGTTTCTCCCGTACTGTGCGAGTATCATCATCGATACAGCAC
GGCTCTGATGTGTCGCGAGCACAGAGTACAATATCTGGTAAGCGCTGTGA
TTTCCCTACCTAGGGGTAGGAAACTATCCCGGGATAGGGCCCGGTCCGAT
GATATTGGAGGGTCCGCTTCTCTCCTCTCATTTTTTTCGAAGTTTACTAA
TTTAGCGGAGGAGCTGTCGTTGAAACAATTCATTCTTTGACTTGAAATTT
ATTCTTATTTTATCTTTTACAGGACTTAGTGAAGAAGTTCCTTGAAAATT
TTGGCGAAGTGAAGTTTGGAAGACTGAACATGAAGCCAGGGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006436XLOC_006436Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011493-exon-sc0000128-1575043694:353028..353056TCONS_00011493-exon-sc0000128-1575043694:353028..353056Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1575043694:352446..352583TCONS_00011493-exon-sc0000128-1575043694:352446..352583Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1575043694:350615..350707TCONS_00011493-exon-sc0000128-1575043694:350615..350707Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1575043694:349742..349797TCONS_00011493-exon-sc0000128-1575043694:349742..349797Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1575043694:349156..349275TCONS_00011493-exon-sc0000128-1575043694:349156..349275Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1575043694:348773..348831TCONS_00011493-exon-sc0000128-1575043694:348773..348831Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1575043694:347715..347817TCONS_00011493-exon-sc0000128-1575043694:347715..347817Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1575043694:347302..347352TCONS_00011493-exon-sc0000128-1575043694:347302..347352Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1575043694:345035..345156TCONS_00011493-exon-sc0000128-1575043694:345035..345156Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1575043694:344639..344732TCONS_00011493-exon-sc0000128-1575043694:344639..344732Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1575043694:343863..343934TCONS_00011493-exon-sc0000128-1575043694:343863..343934Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1510915933:353028..353056TCONS_00011493-exon-sc0000128-1510915933:353028..353056Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1510915933:352446..352583TCONS_00011493-exon-sc0000128-1510915933:352446..352583Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1510915933:350615..350707TCONS_00011493-exon-sc0000128-1510915933:350615..350707Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1510915933:349742..349797TCONS_00011493-exon-sc0000128-1510915933:349742..349797Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1510915933:349156..349275TCONS_00011493-exon-sc0000128-1510915933:349156..349275Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1510915933:348773..348831TCONS_00011493-exon-sc0000128-1510915933:348773..348831Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1510915933:347715..347817TCONS_00011493-exon-sc0000128-1510915933:347715..347817Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1510915933:347302..347352TCONS_00011493-exon-sc0000128-1510915933:347302..347352Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1510915933:345035..345156TCONS_00011493-exon-sc0000128-1510915933:345035..345156Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1510915933:344639..344732TCONS_00011493-exon-sc0000128-1510915933:344639..344732Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1510915933:343863..343934TCONS_00011493-exon-sc0000128-1510915933:343863..343934Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1491911889:353028..353056TCONS_00011493-exon-sc0000128-1491911889:353028..353056Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1491911889:352446..352583TCONS_00011493-exon-sc0000128-1491911889:352446..352583Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1491911889:350615..350707TCONS_00011493-exon-sc0000128-1491911889:350615..350707Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1491911889:349742..349797TCONS_00011493-exon-sc0000128-1491911889:349742..349797Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1491911889:349156..349275TCONS_00011493-exon-sc0000128-1491911889:349156..349275Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1491911889:348773..348831TCONS_00011493-exon-sc0000128-1491911889:348773..348831Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1491911889:347715..347817TCONS_00011493-exon-sc0000128-1491911889:347715..347817Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1491911889:347302..347352TCONS_00011493-exon-sc0000128-1491911889:347302..347352Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1491911889:345035..345156TCONS_00011493-exon-sc0000128-1491911889:345035..345156Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1491911889:344639..344732TCONS_00011493-exon-sc0000128-1491911889:344639..344732Clytia hemisphaericaexon
TCONS_00011493-exon-sc0000128-1491911889:343863..343934TCONS_00011493-exon-sc0000128-1491911889:343863..343934Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000128supercontigsc0000128:343863..353056 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.183365	0	0.133208	4.28319e-05	0.436138	2.05292	4.31613	2.52409	5.87762	4.93877	5.70565	4.34621	5.034	2.31958	2.94253	2.23295	9.14474	7.59546	5.5776	7.14619	9.33895	6.39424	4.36231	4.59189	7.30212	6.68824	2.53026	2.02352	2.11013	3.26735
Blast
[Close]
BLAST of TCONS_00011493 vs. Swiss-Prot (Human)
Match: GEPH (Gephyrin OS=Homo sapiens GN=GPHN PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 9.348e-75
Identity = 136/304 (44.74%), Postives = 192/304 (63.16%), Query Frame = 2 
Query:   35 IDTPRVAERDRFSPYPMVCVSKALSLVLSCIKVPKKRHLVNLHAGLLGKILMEDVRAKEPYPPFAASVKDGYAVIASDGAGVRTVLEPITAGKVPVKTIRTGQCSRINTGAPLPPGADAVVMVEETELVESKQDGRVEVSVRIKTAPRVLQEVRPVGFDIKQGETILSSGEKLGPAELGLLAMAGVHTVSVYTPPSIGIISTGDELVTPGSKRSEGQIFDSNKIALLTAIREQGFNAADLGTISDDYSLMKEKLLNVIDDGTHR--VIISTGGVSMGEKDLVKKFL--ENFGEVKFGRLNMKPG 934
            +D  +VA R R SP+P+  + KA   VL    V     ++N   G+ G++L +DV AK+  PPF ASVKDGYAV A+DG G R ++    AG+ P +T+  GQ  R+ TGAP+P GADAVV VE+TEL+    DG  E+ VRI    R  Q++RP+G DIK+GE +L+ G  +GP+E+GLLA  GV  V V   P + ++STG+EL+ P      G+I DSN+  LL  I+E G+   +LG + D+     + LLN +++G  R  VII++GGVSMGEKD +K+ L  +   ++ FGR+ MKPG
Sbjct:  307 VDITKVARRHRMSPFPLTSMDKAFITVLEMTPV-LGTEIINYRDGM-GRVLAQDVYAKDNLPPFPASVKDGYAVRAADGPGDRFIIGESQAGEQPTQTVMPGQVMRVTTGAPIPCGADAVVQVEDTELIRESDDGTEELEVRILVQARPGQDIRPIGHDIKRGECVLAKGTHMGPSEIGLLATVGVTEVEVNKFPVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDN----PDDLLNALNEGISRADVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPG 604
The following BLAST results are available for this feature:
BLAST of TCONS_00011493 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GEPH9.348e-7544.74Gephyrin OS=Homo sapiens GN=GPHN PE=1 SV=1[more]
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