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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011491 ID=TCONS_00011491|Name=TCONS_00011491|organism=Clytia hemisphaerica|type=transcript|length=3743bpRun BLAST on NCBI protein sequence of TCONS_00011491-protein >TCONS_00011491-protein ID=TCONS_00011491-protein|Name=TCONS_00011491-protein|organism=Clytia hemisphaerica|type=polypeptide|length=754bp MAGHYVNHSPPGAREIKVGILTVSDRCSAGTQEDKSGPNLKALVHKHLQKRun BLAST on NCBI transcript from alignment at sc0000128:340761..359761- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011491 ID=TCONS_00011491|Name=TCONS_00011491|organism=Clytia hemisphaerica|type=transcript|length=19001bp|location=Sequence derived from alignment at sc0000128:340761..359761- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000128:340761..359761- >TCONS_00011491 ID=TCONS_00011491|Name=TCONS_00011491|organism=Clytia hemisphaerica|type=CDS|length=49830bp|location=Sequence derived from alignment at sc0000128:340761..359761- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011491 vs. Swiss-Prot (Human)
Match: GEPH (Gephyrin OS=Homo sapiens GN=GPHN PE=1 SV=1) HSP 1 Score: 362.073 bits (928), Expect = 9.996e-109 Identity = 199/436 (45.64%), Postives = 275/436 (63.07%), Query Frame = 2
Query: 1355 IDTPRVAERDRFSPYPMVCVSKALSLVLSCIKVPKKRHLVNLHAGLLGKILMEDVRAKEPYPPFAASVKDGYAVIASDGAGVRTVLEPITAGKVPVKTIRTGQCSRINTGAPLPPGADAVVMVEETELVESKQDGRVEVSVRIKTAPRVLQEVRPVGFDIKQGETILSSGEKLGPAELGLLAMAGVHTVSVYTPPSIGIISTGDELVTPGSKRSEGQIFDSNKIALLTAIREQGFNAADLGTISDDYSLMKEKLLNVIDDGTHR--VIISTGGVSMGEKDLVKKFLEN--FGEVKFGRLNMKPGKPTTFATIIRGSKTTYFFALPGNPVSAMVTFYLFVLPAIRKLAGYRKPHLQRIQARIDFDACLDTRPEYHRSKLNWDTDDGVPLAVSTGSQCSSRLLSMRSCHALLEL-PSSDNTKRLTRGSMVTALLLPKL 2647
+D +VA R R SP+P+ + KA VL V ++N G+ G++L +DV AK+ PPF ASVKDGYAV A+DG G R ++ AG+ P +T+ GQ R+ TGAP+P GADAVV VE+TEL+ DG E+ VRI R Q++RP+G DIK+GE +L+ G +GP+E+GLLA GV V V P + ++STG+EL+ P G+I DSN+ LL I+E G+ +LG + D+ + LLN +++G R VII++GGVSMGEKD +K+ L+ ++ FGR+ MKPG PTTFAT+ FALPGNPVSA+VT LFV+PA+RK+ G P I+AR+ D LD RPEYHR L W + +P A STG+Q SSRL+SMRS + LL L P ++ L +G +V +++ +L
Sbjct: 307 VDITKVARRHRMSPFPLTSMDKAFITVLEMTPV-LGTEIINYRDGM-GRVLAQDVYAKDNLPPFPASVKDGYAVRAADGPGDRFIIGESQAGEQPTQTVMPGQVMRVTTGAPIPCGADAVVQVEDTELIRESDDGTEELEVRILVQARPGQDIRPIGHDIKRGECVLAKGTHMGPSEIGLLATVGVTEVEVNKFPVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDN----PDDLLNALNEGISRADVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALPGNPVSAVVTCNLFVVPALRKMQGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEPLPWAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL 736 HSP 2 Score: 202.216 bits (513), Expect = 1.099e-53 Identity = 99/172 (57.56%), Postives = 123/172 (71.51%), Query Frame = 2
Query: 434 EIKVGILTVSDRCSAGTQEDKSGPNLKALVHKHLQKLGVVQVLSSCVPDEVHIIKSCLLHWADQEKCVLILTTGGTGFSARDVTPEATKEVIEREAPGLAIRMLSKSIETTPMAMLSRPICGIRKSTIIVNLPGSKKGSQECFEFILPALPHAFDLVSSNEENVSQTHSKMQ 949
+I+VG+LTVSD C ED+SG NLK LV G + VPDE+ IK L+ W D+++ LILTTGGTGF+ RDVTPEATKEVIEREAPG+A+ ML S+ TP+ MLSRP+CGIR T+I+NLPGSKKGSQECF+FILPALPHA DL+ V + H +++
Sbjct: 14 QIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYK-IVPDEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSLNVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVHDELE 184 The following BLAST results are available for this feature:
BLAST of TCONS_00011491 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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