TCONS_00011484 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011484
Unique NameTCONS_00011484
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1412

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011484 ID=TCONS_00011484|Name=TCONS_00011484|organism=Clytia hemisphaerica|type=transcript|length=1412bp
TTCAAACTTGACACCATTGAAGAAAGAAGAAGGCTGCGGAAGGTGACATG
AGGACTTTGACACCTGAGTCTGGTATGTGTGCTTGATTCAGTTGATATTT
CTACtcagGTGCATCCGAAGAAGGTTGAACAACAAATTGACAAGTTTAAA
ATCCAAGAATTAAAGAAAAACTAGACAGAAAAACAACCAACAACCATAAT
GGCTGACAATGATGAGGAAGAGCCTAAAAAGAAAGGTTGAACATTTGGAG
CCGTGGGAGCGTGGTAGTAGAAAGACACATGGTCAAGTCGGAATGTGTGG
TGGTGTACGAGGTGTTGGTGCTGGAGGGATCGTATCTAGTGGTTTTTGTC
TCCTATACAAACTCTTTACTCTTAAATTGACGGAGAAACAATTACTACAA
CTCATCAACCATAGAGATTCGCCATACATTCGCGGTCTCGGATTCATGTT
TATACGGTATTGTCAACACCCCAACACGTTTTGGGACTGGTACGAGTCCT
ATCTTGAAGATGACGAGGAAGTAGATCCGAAGGCAGGCGGAGGCTCTCAG
ATGACAATCGGTCAAATGATTCGCAGTTTCCTATTGAAGCCGGACTGGTA
CGGCACCTTATTCCCTCGTATACCGGTCCCCATTCATAAAGATATCAATG
CACGCCTTCAAGAGATGAACTTGGATGACGAAAGGAAAGTGTATGCAAAT
GAAGGGGCGGATGAAGAGGGAGCTGAAGGGGGctatgaaaatgaagatgg
cGCCAAAGATGATGCTGAACATTCCCGACAAGACGAAGGATCGTCAAGTA
AATCACGTGACCGAAGCCGCGATCGTCGATCTTCTAGTCGCCGAAGAAGT
CGTTCTCGTGAACGTGAACGCAAGAGAAGTCGATCGCGTGATCGAAAAAG
AAGTCACAGTCGCGATCGTAAGAGAAGTCGGAGTCGGGAACGTAGTCATG
GACGTCATCGGGATCGTGACAGGGGCCATAGCGATCGTGATTCACGCAAG
AGAGATGGTGATAAAGATAGACATTCTCATAAGAAACATTCACGTGACCG
ATCGCGAGATCGTGGTGGTCGTCGTGATGAGAAACGAAGGAGTCGGAGTC
GTGAAAGAAGCCGACGCTAACAAATTTTAAGGAAAATGTGCATTGGGAAT
TCTGAACATTACTGTTGAATTGATCGAGAACCTCGCGAGAATAATCCACC
TATAATTAGATATACTTGAAAAGTGATATAGGCATAActtgctttttttt
ttgctatcaAATACTGATACAGTAGTACATTTGTTTCTATAGTGAAGTTT
TATTGAGAAAATTAATCTCTTGCGAAGACTTTCACTTTGTAAATATTTTA
GCTAATAAAATTTTTAACCTTCTTAATCATTTACCGACTCTAAATTCGTA
AATACTCCTGAA
Run BLAST on NCBI

transcript from alignment at sc0000128:224525..235703-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011484 ID=TCONS_00011484|Name=TCONS_00011484|organism=Clytia hemisphaerica|type=transcript|length=11179bp|location=Sequence derived from alignment at sc0000128:224525..235703- (Clytia hemisphaerica)
TTCAAACTTGACACCATTGAAGAAAGAAGAAGGCTGCGGAAGGTGACATG
AGGACTTTGACACCTGAGTCTGGTATGTGTGCTTGATTCAGTTGATATTT
CTACTCAGGTAATTTTTTTTTAGATATTCTTTGGTCAAATAATGTTGCAT
TACTTTCTTGAAGGAGATAAAGCATGGAATATTCTAGCCTGGATCTATCC
ATATTTTAAAGTCGCAAAATTGTCGAATTGTTATCCTATTCCAGTCTGGC
ACATCCTCCTTGCATACACCTTTTCCATTATTCAAACTTCTCAGAAATGG
CCTGGGGAAATGTGCGCTCCATCGTTTGCACAAATTGTTTGGGAGGTAAA
TGAACATGTTTTATCCTGTGGCGACGAGGGGTTAGGGAAAGTGGATTTTC
AGCTTCTAACTTTTGATGGCGATCTTTTTTTGCCAAAAAAATTTTCAGGG
TGGTATAATATCATGAATAGATTGAACATACTTTGAGGGCATTTTGATCT
ACAGAACTTAAGAAAAGCTCAAAAAACTAACTTTCCCTAAGGCGGTCATC
GAAAAAAAATGCTCTGTTCGCGTCGCAACGGGTGTTAAAAATGCATGCGG
GCAGACGGGCGGTCGAAAAAATTCCCGGGTTTTTTAAAATCACGCCAGTA
ATTTGAGGACGGGTGGTTACGCGAACAAAACAATTTTTCGATGGCTGACA
GAGCGATAGAGAAAAAAGCTATATATACTTAAAAAAACAAATTGCTTTTC
CCGGATTTTTTTCCGCGTCTCCGCACCGGAAAATCAGCAAAAAATATGAT
GCGGTCGGGTGACGCAAATAGAACTATTTTTCGATGGCCGCCTAAGGCAG
TCAGGAACAATGTCTTAGTTAGGACAATGGCCTAACTAGGACAATGGCCT
AAGAAGAACGTTTTTTTATCCCTAATTAGGCCATAGATGGCCTAAGTAGG
ACATTTTTAATTTGAACCCCCATTTTAAACATTTTAGGGGAAAATGCACA
TGTTAAAAAACATAACCAATCGAAAGAGCGACCTTTAGTTGGTATATGTT
GAAAATTTCTTCAAAATCTGCGGAAAGGTTTTTTCTCTATGTGTCTTTGA
ATGTACAATTTGTAAAACAGCAGAACAGGAACGGAACGAGAAAGTTACTT
TACCATTGCCACTTGGTCTACCATTATAAAAATTCTTGATTTTACAAATA
AAGGACTGTCTACATCATAAAATTTCGGGTTTTTGTAACATGTAGACTAG
GCTTTAGGGCTAGGATAAGATATTTCTTGATTCGTTTCACCAAAATATTT
GAAAATCACCTAGAACCTTTATTTTTTGGTGCTCTTTCGATTGGCAATGG
TAAGAAAGTGCGCATTTTTCTTGATTTTGAGTTATAGGCAAAAATAGAAA
AAATGGCCTAGTAAGGACGTCAAAGAAATATTGTAATCCATGGTGTAGAC
GAGCAGGAGGACGAAGGAACCAGTGATGGAGACAAAAAATTCTTAGACGC
ACTTGTCAAAACAATCAAGATTCCAACACCAAGTATTAAGAGTGTTTCAA
GGATTGGAAGAAAGGCCGAAGATAAGAAAAGACCAATAAAAGTTGTCCTT
GGATCGGAAAAAGAAAAAATGACTTTCCTTCGTAATTTGGCTCCTTTAAA
AGATAACCAAGAATACAAAGGAGTCAGTGTGACTGAAGATCTTACACAAA
CAGAGAGGCTACTGCTCAAAGAATGGGCAGATAAAGCAAAAGAACTCAAC
TTGGATGATCCTGAGTGGGTTAGGCGCGCTAGAGGGGATTCAAAAAACGG
GTATTACCTCAAGAAGTTCCCACGAAATCAAAACCACTAAATCCCGTAAT
CACAAACAAAAAAAACACAAAAAAATATTAAAAATACGGAAAAACCTAAA
AAGAAGTTACAGAACGTTCGAAAAAACCTAGACATCATATACACGAACGC
TGATCAGCTCACGAAGAAAAAGAAGAAAGAACTTGTTGAGATTACCAAAT
CAAAACCTCACATCATAGCAATATGCGAAGTAAAACCGAAAAATTGGAAG
AGAAAACGTCTCATTGAGGACTTTTCCATTCAGGGATATTCAGCACCTTT
CGAAACGAATGCACTAAATAAAGTTGGCCGTGGAATCGTCATTCTAACAC
ATGAATCGATAAAAGATCTTGTTGTCGAATTAAGATTCGAGACTGAATTC
CAAGAAGCTTGCATGGTCAAAATTAAGTTACAAGGTAATGACACTTTGTT
ATTTGGGTGAATGTATAGAAGTCCTACCAACACAGAGACATCTGCCAAAA
ACAATGCTTCACTCAACCTACTACTTAGGGAAATTGGCATGAATAATAAG
TATACTCATAAATGCATTGTTGGAGATTTCAATTACAAAGACATCAACTG
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCTTGAGGGACACATTCTTCTTCCAGCACG
TTGATGAGCCGACTAGAGCCAGAGGAACAGATGAACCATCGTTAATCGAT
TTGATACTCACTAATGAAGAAAACCAAGTCAATAAAATCAACTACTTAGC
TCCTCTTTGCAAAAGTGACCATAGCGTACTCAGCGGCGTCTTCATCGAAA
GTGGATACGATCGATCGGTACAAGTAGAGAGGAACTGTCTAGAGTTGAGT
ATGTGATTGCACGGAACGAAGCTAACAGAAAGATAACACAAGTAAAAAGG
GAACTTGAAAAACGGATATGTGGGCAAGCAAAGAGGAGTCTAAAAAGATT
TTGGAGACATGTTCGTAACTCCATGAAAACAAAATCTGGGATCTCGCCTC
TCCAGCGCAACCCAAAGGATAAATCTTCTCTTCACTATACGGACGAAGAC
AAAGCTGATATACTACAGGATCAGTTCTGTAGTGTATNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGAGTTTAATCTCACTTTGGAAATGGTCAAAAAAGAACTTAAAGGT
CTCAACCCAAATAAGTCAATTGGTCCGGACGAAATTCATCCAATTATGTT
GAAGGAGCTAGCAGACTACATAGCTGTCCCGCTCCACACAATCATGACTG
AATCATTTGATGAAAGTACTCTGCCAGACGGATGGAAGGTTGCACATGTG
TCACCAATATATAAAAAAGGGAGCAAAAATCTAGCTAAAAATACAGACCA
GTCAGTCTTACATCCATCGCTTGCAGACTGATGGAAAGAGCGTTAAGGGA
CCAAATTATGAAACATCTGGTAGATAAAAAACTATTAGCTAGTAAAGAAT
ATGGATTCATCTCAAAGAGATCAACGATAACACAATTACTTACATACCTT
GATAAATGTGCGGATTCGATATCAAATAATAAAGTAGTTGATGTGATTTA
TTTTGACTTTGACACCGTACCACACCGCAGACTGCTGAAAAAGCTGAATG
CTTATGGAGTCAGAGGATCGGAGCTCAACTGGATACAGTCCTTTCTCATT
GACCGTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTGGTCCACTACTTTTTGTTTTGTACATCAATGATTTACCAGA
GGCTACGAAAGCAGAAATGTTCCTGTTTGCTGACGATACAAAACTGGTGG
AAGAAATAAACAACGTCAAAGATGCGCTCAGGCTACAGGAAGACATTGAT
GCCATGGAAAAATTGTCAAAGGACTGGCTTTTAGAATTTCATCCGAACAA
GTGTCATGTTTTAACACTGGGTAAATTTTGGAACATCAAATATGCCCATC
CCTATACCATAGCAGGATCTGTTCTAGAACATGTTGACCACGAAAAAGAT
CTAGGAGTGATAATCGATAGTGACCTGACCTTTGAAGCCCATATATTCAG
TAAAATCAAGAAAGCTAACTTTATCGTTGGCTTGATTAGCAGGAGCTTCG
CCAGATATGTTTCAAACGTTTTTCATTGCATTTGTCAGACCCCATTTGGA
ATATGTACACGTAGTATGGTCTCCAAGGCTAATCAAACATATCAATGCAA
TCGAGGGCGTCCAACGAAGAGCTACAAGGCTAGTTAGTTGCTATAGAAAC
TACTCATACGAAGATCGGCTACGACTCATCAATCTACCTAGCCTAAAGAC
CAGGTGCAAATTGGTGATATGGTGGAAGTTTTCAAGAACCTCCAGATTTA
TGACGAGTCTATAAGATCAGAGAAATTTACTCCTCGGACACGACCACGAC
GTCAGCATGATTACGAGCTTCAAAGGAACATTGCTAATGATGGTATGAGA
GGCTACCAAAGCAACTCTCTTTTTTACAGAAGTGTGAAACCTTGGAATGA
TCTAGAAGAAGATATTGTTGAAGCACCATCCTTACAAGTCTTCAAAGAGC
GTTTGATAAAAGAATGGGAGAAAAAACTTTATAAAATGTAAAATCAAAAG
TTCTGTTTCATAGAGGTCAATAGACCTGCGAAATATATTGCTATAAAATA
AAATAAGGACATTTTTTATTTCCTAGTTAGTACATAATGTCCAAACTAAG
ACATGATGTCCTAAGTAAGACATTGTTCCTGACTGTAAAGGCAGTCTGAG
AAATCTTGTACTGTATCCTGTAAGCACGCAATTACACAGTTAAAATTTAC
GCCCGTTTGGGATTGCATGATTGAGATTGCTTGAGCAGATTAGAGGGTTC
CGATTTTTCAAAATCAGCGCAGACATGGTCAAGCCGACAAAATTTTATAA
CAGGATCATTTTCTACGATAAATTTTGAGTAAGATATAGTCCAAGGCTTT
CTAATTTTTACGAAGCAATCGGAAGCAAATAAAGTTTTTTTAAATGATAG
ACTAGTTTTAAGGAAGCAATTGCATGCTTATCACCCATTCAAATAGTGAT
AAGCTATTTTGATAGCCATGTAATTGCACGTCTAAATCTCAGAAGTTAAG
CGCGCAATCAAGAGGGTTTCCCAAACTGTAAGGAAACACAGGCAAAAACA
GGTTTGTTTACCTCCAGAAAACAAACGGTGGAGACCATCAAAATAATGTG
CACACATAATAATAATGTGCGCACATTAGTTTTGCGAACTACAGGAAAGG
TGTATTGCATAGGGTGTTCATTTGCAAAAGTTTTTCCATATTCAGTGCAA
ATGCAATAGTCTTGGGCAAAACATGCTAATTCGACCTTTAAATTGAAAAT
TGCAAAAGACAAATTGAAACGGNAACATGCTAATTCGACCTTTAAATTGA
AAATGGCAAAAGACAAATTGAAACGACAACTTCTTTTCTTCTAGAATAAT
CTTCAAATATGTAAGTAAAAAATCACCCATTGGAAAAAAATTTCATCTAT
CCATTTTTCTGGAAATATAATGCAATTACACTGGGTATATATTAGTAACT
TTTATCTTCTACCCATTGTATTTGCAACTGGTCGCAGCCCCAAATAACAC
AACCCAGGGCATGGCCTGAAATGTTCTGGCCTCGCGAACACACAGGTTCG
CGCAATTTCAGGCCATGTTTGGGCCAGATTTAAGTCAGTCATAAAAACAG
AGAAACACTACATTTGAAAAACAGAGGGTCCGTTTTTGTGAAATGCAAGG
ACCGCAATGACGGACCGTCTACATAAACACATCCATTTCTGGACTTTTTT
TTGCAGACCGACCAACTGACTCATTTTTTTACCTAAAAATGACGGGAGCA
CAAGTTTTCTCTGGAAAACTCAACCAATTGATCTGATCATTTCTGACAAA
TCAAATTCAAAGAGTCTCAGTAAATTCAACCTTGTCTGCTAAAACAGAAG
TTATATCAGGTGCTCCACAAGGCTCAGTGCTCAGCCCACTTCTATTTCTC
ATCATAATCCAAGACAACAAAGTCAACAGACGACACTCGCTTGATAAAGG
AGCAACCTAGCTGATAAAGAGTATCTCCAAAACAATATGCTGTTTAGGAA
TAGACAGAAAGGAACAATATGAAATTTGAACATCTTGCATATGGTAAAAA
TGACACCCTGAAACAAAACTCATCCTACTTCTCTAACACAGCAACACTTA
TTGAAACCAAAGTACAAGTGTGTCACACTGGATAATGACATATGACCAAC
ACATTACAAGATCAAATTCAAAAAGTAAAGAACATAAGTGCATGGATCTA
TTGAACTTTTAAATTGAGGAAGGTAGGAGTGATGCTTACCTTATGAAAAT
CTTTGGTAATTCCACACCCAGATTATCGCTCTCAACTTTGGTTGCCGTGG
AAATGAAGTCTAACTCAGAATTGGAAGAAGTTCAAAAATCGTTTCTACAT
GGCATCCCATCACTACGCCACTTAAACTACTGGCAAAAGCTGAAAACACT
AAGGTTATACAGTCTCAAAAGATGAAGATAACAATGCCAGATCATTTACA
CTTGGAACGTCATTGAAGGCAATGTACCAAACAGGAATTTTGATGATTAA
ATGGGAGGCATATTTTGTCGCTCAAGCAGAGATTGAGCAGAACTTGTAAT
CTCAAACCTTTCAATACCATACATAAAAACATCTGGAAGGGATGTCTTTC
ACCAGAGGGTCAATTGCTCAAAAGACCACTTCAAAAAATATTAAAACATC
TTTCGAGCAACTGTACCAGACGAGCCACTGCTTGCCAACTATTTCCAGGC
AAGCTGACTCAAATACAATGTTGAAAAAATGCCCAAGCATTTACAAGTTG
GATATGCTGTTCATGTAAAATCAGAAAAGAGGTACAAATAGGTAGGTTAT
TTGTGATGTCAGCCTCAACAAAAAAGATGTACATAGAAAAAGTTAGGAAA
AGCTGGTTGTTTAAAATTGTAAAATACCTACTTGAATGAGAGAATGCTAT
CCTAGGTATCAAAACAATTGGTAAAAATAAATTTTGTTTAATAAATTATG
TAAATAGGCGTTTTCTATGGATGGTACTTTTGACATAGCAGACTCAGCAA
GGTTGACAAAGTCATTCCAAAGATCATTTAACGGAGTTGTCTTATTACAG
GCCATTTTTCATGCCCTTTTAGCGTCTGGTTATCGGACGCTGCCCCTCCT
GAAATTACTAAAATATTGGTAAAAACAGCCTTTTTTGTGGAAAAACACTG
AAAAAAGTGCCCTTTTTGACCACCAACGGACGCTGCTTTGCCTTTCTAAA
ATATGGCCTGTATTATGTAGCTGACAAAGATTTGTAACATCAGATTTTTT
ATATCAGGGATATTGGCATGATTCCATAGGTGGGCAGTTTTTTTTACTGG
GCGGCTATGTGGGTGAAATGCGATAACTATTCAATCATGGTCACTAGGTC
CAGCAGTGTCTTCCATTAATGAAATGAAGGATGGGTTGTTTTTTTAAATC
AATTCAAGGATATTTTTCTTTCTGGTTGGAAAGGCAACTAAAATTGAGAA
AATACACAATGAAATAGCACACTATTCTAAAACACTATAGCGTCACTGTG
AATTTTTTTTCCTTTTACGATTCAGGTGCATCCGAAGAAGGTTGAACAAC
AAATTGACAAGTTTAAAATCCAAGAATTAAAGAAAAACTAGACAGAAAAA
CAACCAACAACCATAATGGCTGACAATGATGAGGAAGAGCCTAAAAAGAA
AGGTAACGCTCTGCCACTGTGGGGTAACACACACTCTATGAACATCAACA
ATCTCATTGTCACTAATATCTTGGCCAGTCCCTACTTCAAGAATGAACTG
TTCAAGTTAAAAACTTTTCATGAAGTGATTGATGAGATTTACTACAAGGT
CAGTTTGTTATTTTTTTCTTCTTCCAATAAATGCATTACTGCATCTTCTC
ATCTCTTATTGGAAAGCAGGTACTGGAAAATGCAATTTATTAACAGGATG
TTTCTTTTTATTATGCAAATAAATAAAGTGGTTAATACTTAATGTCCTCG
TACTTAACGCTCTTACTAAATCTTTCAATGATTTATGACAAATTATTTTC
CCATTCTTTTGGAAATGAACCTTGGAGCATATTCATGAAATAACTTTATA
GCTTTTGAACAAATTCTAGTCCTGAATAAAAAAGGATTGATCTTTTCTTC
TCTCACTGAAATGATGTCTAATCCGTTGTTCTGTTCCTTTATTTCTCGTG
CAGGTTGAACATTTGGAGCCGTGGGAGCGTGGTAGTAGAAAGACACATGG
TCAAGTCGGAATGTGTGGTGGTGTACGAGGTGTTGGTGCTGGAGGGATCG
TATCTAGTGGTTTTTGTCTCCTATACAAACTCTTTACTCTTAAATTGACG
GAGAAACAATTACTACAACTCATCAACCATAGAGATTCGCCATACATTCG
CGGTCTCGGATTCATGTTTATACGGTATTGTCAACACCCCAACACGTTTT
GGGACTGGTACGAGTCCTATCTTGAAGATGACGAGGAAGTAGATCCGAAG
GCAGGTACGCCATTTTTTTTCTCCATGTGTTTCTGTAGGAAAGAGCTAAG
CTTTTGTTTTTTTAGAAATACATGCTGATAAATTATAAGGGGACGGTAGA
CAGTGAATCAAGTTTTAATATTGAATAGATCATGCTCTGTCTTTTTAAAC
GCCTTAGTTTTCTGTATAAATCTCTGGCAGGGTTTGAATTTATCAGTGCT
ATATTAACTATTGTTTGTTACAATCGCTGGCTTTATGCTGACTATTCAAT
TTTTTTATTCATTTGTTATTTTCTCTTCCAAGTAACCAGTTTGATTTTGG
AAATGTCGTAAAACCGCGAAAAAGAAAGCAGAACATGTTGTTAAAACACA
GTTCCAAGATTTTCCAAACTTGCTTAAAAATCGTATTTTACAAGATTCCT
CACACAGGGATTAAATCATTCTTCAAGTTTTCTTAAATACTGCTCACAGT
GGATTTCAAAGTTTTACTCACGTAAAACCTTATTTCTCGCAAAAAGCAAC
ATGAGTTAGTTATGTTTTACCAGGACTACATGCAGTGCAGATTTCATTTA
TTTTCATTTATTTAGGCCTTTTAAAATCTTCCCTGTGACGATTCTCAAAA
AGAAAAGCCATTTAAGTAACATTAACGAACCAAATAAAAAATCTTTTAAT
CATTTATTTTAACCTAAAAGTCTGCCAGGTCACTTTTTTCATGATGAGGT
TGTTTTGCTGTTGGCGTTACTCAAGGGTAACTAAAACTCAATTTCGCAAA
GGTTAGAATGCATTAAGCACAGTCAATATCAGTGTTAAAAAGTCGCTCCG
TTTCAGACGGTTTTCCGTCTCAGCAAAGTGTATAAAGAGAGGCTTTTCTG
TCTCAAAACTCTATAATTCACCAAAGTTCCAAGACTATTTTGCTTATTGG
CTGTGTAAAATCTATTTCCGTCTCCGACGAAAAACCTTGTTTTGACCATG
CAACAGATTTCCATTTTTTGCTTTCCCCAGTAAGTCTGGGTACAGTTGCT
CAAAATTCACGGGAATAGTTTTTCGAACAGTCTTTTGAAACCTATGGTGA
ATATTTCCGATATATACAGAAACTTTTTCCTCATTACCTTGCACGAAGAA
AACCCTCTTTTTTTGAAACAGTTTTGAAGTACAAAAGAATGAAGAAAGAA
GTAAAACGAGATTTGAGGTACCTCTTCTGATGTTCATTTTCTTTCGCCAA
TAACTTATTTTGTTGTTAGAATAATGGACTTCAATATAATCCACGATAAC
CTATTATCTTCTCATCATGATGATTTTAATTATCTTTTCTAGGCGGAGGC
TCTCAGATGACAATCGGTCAAATGATTCGCAGTTTCCTATTGAAGCCGGA
CTGGTACGGCACCTTATTCCCTCGTATACCGGTCCCCATTCATAAAGATA
TCAATGCACGCCTTCAAGAGATGAACTTGGATGACGAAAGGAAAGTGTAT
GCAAATGAAGGGGCGGATGAAGAGGGAGCTGAAGGGGGCTATGAAAATGA
AGATGGCGCCAAAGGTTTGTCTTCTGTTATATTTCTTTACTTTACCTTTT
TGGTCATCAACAATTGTGTGTTGTTCATCTCTATCAATTGTTTGCTTTCG
TCCACATTCATCCTTATATGATACTCTTCAATGGGCAAACACTTTTTCAC
GCAAGTATTAAGCATAATTTTTTGAATTTTTAAGTATGTCTGCTTGAATT
CATTTCCCTTCTTTCTTTATGATAGATGATGCTGAACATTCCCGACAAGA
CGAAGGATCGTCAAGTAAATCACGTGACCGAAGCCGCGATCGTCGATCTT
CTAGTCGCCGAAGAAGTCGTTCTCGTGAACGTGAACGCAAGAGAAGTCGA
TCGCGTGATCGAAAAAGAAGTCACAGTCGCGATCGTAAGAGAAGTCGGAG
TCGGGAACGTAGTCATGGACGTCATCGGGATCGTGACAGGGGCCATAGCG
ATCGTGATTCACGCAAGAGAGATGGTGATAAAGATAGACATTCTCATAAG
AAACATTCACGTGACCGATCGCGAGATCGTGGTGGTCGTCGTGATGAGAA
ACGAAGGAGTCGGAGTCGTGAAAGAAGCCGACGCTAACAAATTTTAAGGA
AAATGTGCATTGGGAATTCTGAACATTACTGTTGAATTGATCGAGAACCT
CGCGAGAATAATCCACCTATAATTAGATATACTTGAAAAGTGATATAGGC
ATAACTTGCTTTTTTTTTTGCTATCAAATACTGATACAGTAGTACATTTG
TTTCTATAGTGAAGTTTTATTGAGAAAATTAATCTCTTGCGAAGACTTTC
ACTTTGTAAATATTTTAGCTAATAAAATTTTTAACCTTCTTAATCATTTA
CCGACTCTAAATTCGTAAATACTCCTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006433XLOC_006433Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011484-exon-sc0000128-1575043694:235596..235703TCONS_00011484-exon-sc0000128-1575043694:235596..235703Clytia hemisphaericaexon
TCONS_00011484-exon-sc0000128-1575043694:227702..227828TCONS_00011484-exon-sc0000128-1575043694:227702..227828Clytia hemisphaericaexon
TCONS_00011484-exon-sc0000128-1575043694:226900..227200TCONS_00011484-exon-sc0000128-1575043694:226900..227200Clytia hemisphaericaexon
TCONS_00011484-exon-sc0000128-1575043694:225390..225611TCONS_00011484-exon-sc0000128-1575043694:225390..225611Clytia hemisphaericaexon
TCONS_00011484-exon-sc0000128-1575043694:224525..225178TCONS_00011484-exon-sc0000128-1575043694:224525..225178Clytia hemisphaericaexon
TCONS_00011484-exon-sc0000128-1510915933:235596..235703TCONS_00011484-exon-sc0000128-1510915933:235596..235703Clytia hemisphaericaexon
TCONS_00011484-exon-sc0000128-1510915933:227702..227828TCONS_00011484-exon-sc0000128-1510915933:227702..227828Clytia hemisphaericaexon
TCONS_00011484-exon-sc0000128-1510915933:226900..227200TCONS_00011484-exon-sc0000128-1510915933:226900..227200Clytia hemisphaericaexon
TCONS_00011484-exon-sc0000128-1510915933:225390..225611TCONS_00011484-exon-sc0000128-1510915933:225390..225611Clytia hemisphaericaexon
TCONS_00011484-exon-sc0000128-1510915933:224525..225178TCONS_00011484-exon-sc0000128-1510915933:224525..225178Clytia hemisphaericaexon
TCONS_00011484-exon-sc0000128-1491911889:235596..235703TCONS_00011484-exon-sc0000128-1491911889:235596..235703Clytia hemisphaericaexon
TCONS_00011484-exon-sc0000128-1491911889:227702..227828TCONS_00011484-exon-sc0000128-1491911889:227702..227828Clytia hemisphaericaexon
TCONS_00011484-exon-sc0000128-1491911889:226900..227200TCONS_00011484-exon-sc0000128-1491911889:226900..227200Clytia hemisphaericaexon
TCONS_00011484-exon-sc0000128-1491911889:225390..225611TCONS_00011484-exon-sc0000128-1491911889:225390..225611Clytia hemisphaericaexon
TCONS_00011484-exon-sc0000128-1491911889:224525..225178TCONS_00011484-exon-sc0000128-1491911889:224525..225178Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000128supercontigsc0000128:224525..235703 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0.0172577	0	0	0	0	0	0	0	5.07385e-05	2.06605e-05	0	0	0	0	0.000104469	1.74377e-07	0	0	0	0
Blast
[Close]
BLAST of TCONS_00011484 vs. Swiss-Prot (Human)
Match: PR38B (Pre-mRNA-splicing factor 38B OS=Homo sapiens GN=PRPF38B PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.040e-40
Identity = 98/143 (68.53%), Postives = 120/143 (83.92%), Query Frame = 2 
Query:  233 KVEHLEPWERGSRKTHXXXXXXXXXXXXXXXXXXXXXFCLLYXXXXXXXXXXXXXXXINHRDSPYIRGLGFMFIRYCQHPNTFWDWYESYLEDDEEVDPKAGGGSQMTIGQMIRSFLLKPDWYGTLFPRIPVPIHKDINARLQ 661
            KV H+EPWE+GSRKT GQ GMCGGVRGVG GGIVS+ FCLLYKLFTLKLT KQ++ LI H DSPYIR LGFM+IRY Q P   WDW+ES+L+D+E++D KAGGG  MTIG+M+RSFL K +W+ TLFPRIPVP+ K+I+ +++
Sbjct:   92 KVTHVEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQIK 234
The following BLAST results are available for this feature:
BLAST of TCONS_00011484 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PR38B1.040e-4068.53Pre-mRNA-splicing factor 38B OS=Homo sapiens GN=PR... [more]
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