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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011435 ID=TCONS_00011435|Name=TCONS_00011435|organism=Clytia hemisphaerica|type=transcript|length=2151bpRun BLAST on NCBI protein sequence of TCONS_00011435-protein >TCONS_00011435-protein ID=TCONS_00011435-protein|Name=TCONS_00011435-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp MSQFKRVFIGRPIIKEAVDIIKNAGFEVDMWEERLILPTEDEMCERSKGVRun BLAST on NCBI transcript from alignment at sc0000128:94361..116684+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011435 ID=TCONS_00011435|Name=TCONS_00011435|organism=Clytia hemisphaerica|type=transcript|length=22324bp|location=Sequence derived from alignment at sc0000128:94361..116684+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000128:94361..116684+ >TCONS_00011435 ID=TCONS_00011435|Name=TCONS_00011435|organism=Clytia hemisphaerica|type=CDS|length=10758bp|location=Sequence derived from alignment at sc0000128:94361..116684+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011435 vs. Swiss-Prot (Human)
Match: GRHPR (Glyoxylate reductase/hydroxypyruvate reductase OS=Homo sapiens GN=GRHPR PE=1 SV=1) HSP 1 Score: 306.605 bits (784), Expect = 4.866e-97 Identity = 160/325 (49.23%), Postives = 212/325 (65.23%), Query Frame = 3
Query: 636 QFKRVFIGRPIIKEA-VDIIKNAGFEVDMWEERLILPTEDEMCERSKGVHGLYTLGPQKVTKKILDAAGDQLKVVSAMSVGVDAIDLVELKSRGIRLGHTPGVLTDAVAELAVGLLLSTSRRIIEQAHVAKSGHWSTWDPFGDLGCGLRNSTVGIVGLGRIGSAVARRLVPFGVSKIVYNSRSEKP-EAKEFNAQYLSFDELLAVSDFVICCCSMNDSSKELFNESAFSKMKSSAILVNIGRGGMVDQNALVKALQNNQIRGAGLDVTTPEPLPKEHPLYQFPNVCILPHIGSAEIQTRTDMATMAARNLVAALTGEKMPAEYPL 1604
+ +VF+ R I E V + + A EV+ W+ +P + E+ G HGL L V K+ILDAAG LKV+S MSVG+D + L E+K RGIR+G+TP VLTD AELAV LLL+T RR+ E K+G W++W P G GL STVGI+GLGRIG A+ARRL PFGV + +Y R +P EA EF A+++S EL A SDF++ CS+ +++ L N+ F KMK +A+ +NI RG +V+Q+ L +AL + +I AGLDVT+PEPLP HPL N ILPHIGSA +TR M+ +AA NL+A L GE MP+E L
Sbjct: 5 RLMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAK-ELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSELKL 328 The following BLAST results are available for this feature:
BLAST of TCONS_00011435 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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