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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011416 ID=TCONS_00011416|Name=TCONS_00011416|organism=Clytia hemisphaerica|type=transcript|length=1375bp
gtTGTAGACaaataacatcaaaacattGGATCGTAAACAAGAAAGGGGAC
CAATAAAGATGTCTTACGAATGTACACCATCAGTTACAAAATCATCATTC
CTGCTTCACTCACTAGCCTTCGCATGGTCTTGTTTTGGTATCTACCACGA
CCGAACACACTACATATCACCTAACTTCAAAACGTATGGTGGAAGGTTCA
AATATCTGACACTCTGTAATGCTTACATCTCTCTGCTCGTGTATGGATTT
GCTACACTATCAGACTTATATAATGTTTTAACTGATGATAAAAGCAAGAA
GTTTGATAAAAATGGTTACCCGAAAGTCAACCAATCTCGTTTGATCCACA
TTCGTGATTACGTCATCACAACGTTCGTTTCCAGTCTTTCATTAGTTGTG
GTGGTCATGTTTTGGGGCGTGGCAGCTGTTGATGTTGAAGGAATCCACCC
TGCAGAACACCAAAAACTTGTCCCTTTATTCGGCTGGTACAATCATTTCC
TACACACGACGCCAGCCTTGGTTACACTGGCCTTGCTTACCCATGTTAAC
TACCGTTTCTCAAGCATTTTAGAGAGTTTGACCACAGTTATTGGTATGGG
AGTTCTATACTTTTGTTGGATGTCCCATTTGTCAACAATATTCGGCGAAT
GGCCGTACGGTTTTCTGGATAACATGCCAACTGAAGTGTTTATCGTGTTT
ATTTTGTGTGTTCATGGTTTCATTGCAGTGATTCATCTGTTTACTCGTGT
TATATCTAACATTTTCTGGAATGAAAAATTGAGAGAAGATTTAGCAGcaa
gacaaaagaaaaacatgtagaTAATGGTTATACATTGAAAAGATGCGGCA
GCGTGGCAGAAAACTTAAAATTCTCGTAATAAAACCCATTGACCGCGTAA
AACATGAAACTTACTTACGATATATCGAAAAAGTGTGATTTTGTGAATAC
CATGGATGAACACCGATGtcgtaaaataaaacataagtaATTCCTCTCTA
ATTAGATGTTATAATACTCTATACTCTCCATTATTCAATAATATTGAAAA
TCACCgccaacaagaaactctcacaaATGACGCTCTACTATTAGATACGA
TATTCTTGTAATACATGCCTTTTCAAATAGCCATTAATAAAGTCTGTTGC
ATAAAACATTTTTGAGTATTGCCCTTCTGgtaatcaaaaaaaatatacat
ttaaaaGTAGTATCGTTGGAAGTGTAATTTTAAGCGGATTGATGTAAGCT
TTATGAGaatattctaaaaaaatattgaaaagcaaGAAAATGACAAAAGT
GTCAAAACATTTCATTGTCACTTTATCGCCCACCGGGACCTTTTTGGagg
gctataacttttgatccaagAGCGG Run BLAST on NCBI protein sequence of TCONS_00011416-protein >TCONS_00011416-protein ID=TCONS_00011416-protein|Name=TCONS_00011416-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
MSYECTPSVTKSSFLLHSLAFAWSCFGIYHDRTHYISPNFKTYGGRFKYL
TLCNAYISLLVYGFATLSDLYNVLTDDKSKKFDKNGYPKVNQSRLIHIRD
YVITTFVSSLSLVVVVMFWGVAAVDVEGIHPAEHQKLVPLFGWYNHFLHT
TPALVTLALLTHVNYRFSSILESLTTVIGMGVLYFCWMSHLSTIFGEWPY
GFLDNMPTEVFIVFILCVHGFIAVIHLFTRVISNIFWNEKLREDLAARQK
KNM Run BLAST on NCBI transcript from alignment at sc0000127:377148..378522 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011416 ID=TCONS_00011416|Name=TCONS_00011416|organism=Clytia hemisphaerica|type=transcript|length=1375bp|location=Sequence derived from alignment at sc0000127:377148..378522 (Clytia hemisphaerica)
CCGCTcttggatcaaaagttatagccctCCAAAAAGGTCCCGGTGGGCGA
TAAAGTGACAATGAAATGTTTTGACACTTTTGTCATTTTCttgcttttca
atatttttttagaatattCTCATAAAGCTTACATCAATCCGCTTAAAATT
ACACTTCCAACGATACTACttttaaatgtatattttttttgattacCAGA
AGGGCAATACTCAAAAATGTTTTATGCAACAGACTTTATTAATGGCTATT
TGAAAAGGCATGTATTACAAGAATATCGTATCTAATAGTAGAGCGTCATt
tgtgagagtttcttgttggcGGTGATTTTCAATATTATTGAATAATGGAG
AGTATAGAGTATTATAACATCTAATTAGAGAGGAATtacttatgttttat
tttacgaCATCGGTGTTCATCCATGGTATTCACAAAATCACACTTTTTCG
ATATATCGTAAGTAAGTTTCATGTTTTACGCGGTCAATGGGTTTTATTAC
GAGAATTTTAAGTTTTCTGCCACGCTGCCGCATCTTTTCAATGTATAACC
ATTAtctacatgtttttcttttgtcttgCTGCTAAATCTTCTCTCAATTT
TTCATTCCAGAAAATGTTAGATATAACACGAGTAAACAGATGAATCACTG
CAATGAAACCATGAACACACAAAATAAACACGATAAACACTTCAGTTGGC
ATGTTATCCAGAAAACCGTACGGCCATTCGCCGAATATTGTTGACAAATG
GGACATCCAACAAAAGTATAGAACTCCCATACCAATAACTGTGGTCAAAC
TCTCTAAAATGCTTGAGAAACGGTAGTTAACATGGGTAAGCAAGGCCAGT
GTAACCAAGGCTGGCGTCGTGTGTAGGAAATGATTGTACCAGCCGAATAA
AGGGACAAGTTTTTGGTGTTCTGCAGGGTGGATTCCTTCAACATCAACAG
CTGCCACGCCCCAAAACATGACCACCACAACTAATGAAAGACTGGAAACG
AACGTTGTGATGACGTAATCACGAATGTGGATCAAACGAGATTGGTTGAC
TTTCGGGTAACCATTTTTATCAAACTTCTTGCTTTTATCATCAGTTAAAA
CATTATATAAGTCTGATAGTGTAGCAAATCCATACACGAGCAGAGAGATG
TAAGCATTACAGAGTGTCAGATATTTGAACCTTCCACCATACGTTTTGAA
GTTAGGTGATATGTAGTGTGTTCGGTCGTGGTAGATACCAAAACAAGACC
ATGCGAAGGCTAGTGAGTGAAGCAGGAATGATGATTTTGTAACTGATGGT
GTACATTCGTAAGACATCTTTATTGGTCCCCTTTCTTGTTTACGATCCaa
tgttttgatgttatttGTCTACAac Coding sequence (CDS) from alignment at sc0000127:377148..378522 >TCONS_00011416 ID=TCONS_00011416|Name=TCONS_00011416|organism=Clytia hemisphaerica|type=CDS|length=762bp|location=Sequence derived from alignment at sc0000127:377148..378522 (Clytia hemisphaerica)
ctacatgtttttcttttgtcttgCTGCTAAATCTTCTCTCAATTTTTCAT
TCCAGAAAATGTTAGATATAACACGAGTAAACAGATGAATCACTGCAATG
AAACCATGAACACACAAAATAAACACGATAAACACTTCAGTTGGCATGTT
ATCCAGAAAACCGTACGGCCATTCGCCGAATATTGTTGACAAATGGGACA
TCCAACAAAAGTATAGAACTCCCATACCAATAACTGTGGTCAAACTCTCT
AAAATGCTTGAGAAACGGTAGTTAACATGGGTAAGCAAGGCCAGTGTAAC
CAAGGCTGGCGTCGTGTGTAGGAAATGATTGTACCAGCCGAATAAAGGGA
CAAGTTTTTGGTGTTCTGCAGGGTGGATTCCTTCAACATCAACAGCTGCC
ACGCCCCAAAACATGACCACCACAACTAATGAAAGACTGGAAACGAACGT
TGTGATGACGTAATCACGAATGTGGATCAAACGAGATTGGTTGACTTTCG
GGTAACCATTTTTATCAAACTTCTTGCTTTTATCATCAGTTAAAACATTA
TATAAGTCTGATAGTGTAGCAAATCCATACACGAGCAGAGAGATGTAAGC
ATTACAGAGTGTCAGATATTTGAACCTTCCACCATACGTTTTGAAGTTAG
GTGATATGTAGTGTGTTCGGTCGTGGTAGATACCAAAACAAGACCATGCG
AAGGCTAGTGAGTGAAGCAGGAATGATGATTTTGTAACTGATGGTGTACA
TTCGTAAGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011416-exon-sc0000127-1491911889:377148..378522 | TCONS_00011416-exon-sc0000127-1491911889:377148..378522 | Clytia hemisphaerica | exon |
| TCONS_00011416-exon-sc0000127-1510915933:377148..378522 | TCONS_00011416-exon-sc0000127-1510915933:377148..378522 | Clytia hemisphaerica | exon |
| TCONS_00011416-exon-sc0000127-1575043694:377148..378522 | TCONS_00011416-exon-sc0000127-1575043694:377148..378522 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000127 | supercontig | sc0000127:377148..378522 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006838 | Far-17a_AIG1 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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