TCONS_00011387 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011387
Unique NameTCONS_00011387
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length910

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011387 ID=TCONS_00011387|Name=TCONS_00011387|organism=Clytia hemisphaerica|type=transcript|length=910bp
GGTCGTACTAAAGGTCAACCAATTTCCGAACGAGTAATCTGTTACATGTG
GCCGAAAAGCAATAGAGGATTTTGCCCAGGAAATTCTCATAGCTATTAAC
GACTATCCGGAAATTCTTCTACAATCGTTATCTCCAAGATGAAATGATAT
AAATAAGAGTTGTTCTTGAATATTTTGATCATATCGAATAAATCAATTCA
AATATTCGAACCACTCACATCTCATCATGAAGGTTTTCATCGTCTTAGCT
CTTTGCGctgCTTCTTACGCCCTTGAGGTTGAAAAGATCACTGGTACCAC
ACCACCAGCTGTACCGTGCCCAGACTCCCTCTGCAAAGGAAAAGCTGACG
GAAACTTCGAATACTACTACTATGGCCAATACAGAAGCAACTATTTCGTC
CAATGCTCAAATGGATTAGCTGCCTGTCAACCATGTTTCCCATTGTCTTT
GGAATTCAGTCAATCATGCAACCAATGTCTTTACAATAAACAGGACGATT
GTGTTACCACACAACCATGGGAACCAGCAACCACTTTAAAATGCACTGAT
ATTTGCCCAACACGAGGACCTGAATTCAGTGGCAACATTGAAGATCCACA
CAGCCCATTCCAATACATTGCCTGCTGGAAGGGAGTCACTGTAGGATGTG
TTGCTTGCCCAAGTGGTTTACAATTCAACGAGAAATGGAATGCCTGTTTG
TTTGATGGTATCTACAAGACTGCCCCATCTCACTAAATTCTTTGATATTC
CAACATTGATTTATATCATGTACTGGATACATGTGCTTTGGATATTGATT
GACCAAAgtcaaaaaaacgaaaatttttgTAACATTTGATAAGTATTTGT
AATCattatttttaattgaaatttgtATTTAACTTCGAAACTATTTTTTT
GAAGAATCAC
Run BLAST on NCBI

transcript from alignment at sc0000127:241850..244820-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011387 ID=TCONS_00011387|Name=TCONS_00011387|organism=Clytia hemisphaerica|type=transcript|length=2971bp|location=Sequence derived from alignment at sc0000127:241850..244820- (Clytia hemisphaerica)
GGTCGTACTAAAGGTCAACCAATTTCCGAACGAGTAATCTGTTACATGTG
GCCGAAAAGCAATAGAGGATTTTGCCCAGGAAATTCTCATAGGTATGTCA
ATCTCAAAGGTATGTTAAAACTATTGGATTACCCCTAAAATAAACTCACA
CAATATACTATCATTCTAAAAATACGGGAAAAAAAGTAAACAAAAACATA
CAAACAAGATGGAAATTTACCGAAAGAGTAATCTGTTTCAAAAACAAAAA
AAGACTTCGCGGCCAGGAAATTCTTACTGAAAAACCTGTTAAAACCGTTG
AATTTCCCCTAAAATAGACTCACAATATTATCAATGTAGTACGGGAAAAC
AAAGCAAACAAACATATAAACAAGATATATGATGAAAAATAATGATGAAA
GTTATCATAAGACAATAGAATTATGACAAAAAATGAAGAAGATGTTTGTG
ATGTTTTATTATGACACGATGGGATATTACATAAGCAATTAGATATCCCG
CTGTTTACATACATTGTTACATTTTCAAATGGGGACGAGAAAGAGTTTTT
ACAAGCTCTTATTTGATTTGGTTGGTCGTTAACCAGTAATAAAACAATTT
TGTTACTTTTTCTAAAGAAGGCGTCATTTTTATTACTTCAAATGACCAAT
TATTAAAGTACCAATTATTAAAGTATCTTATAAAAGCTCCATCTTATCTG
TTCAAATGACATTCAATTTCAATTTATTAGCTATTAACGACTATCCGGAA
ATTCTTCTACAATCGTTATCTCCAAGATGAAATGATATAAATAAGAGTTG
TTCTTGAATATTTTGATCATATCGAATAAATCAATTCAAATATTCGAACC
ACTCACATCTCATCATGAAGGTTTTCATCGTCTTAGCTCTTTGCGCTGGT
AAGAAACATTTTTTTATCTGACACACAACGTCTCGACAACATCCATCTAT
CGTCCATTTCATCAACGTTAAATGAATGTTTAGACAACGTTATGCCCCGA
TGAGGGGAATCTTATCTCATCATTTCGAATTTTCCTGAATCATCTCTGTA
TATTGAAAAGACAAGGCAGTGTTGCCCGTTGTTAAATAAGGAAGTCTAGT
GATTCTCTCAGATAGTTGTCAAATAATCTATCCACTAATTTTGCGGTTTT
CGGAACGGCACCATTTCTTGTTGTAACTGTAATTAATATATAAGCGACCG
TAGTGCAGTGGTAAAGCATCCGGCTACGGTTCGCAAGGTTGTGGGTTCAA
CCCCCAGCCGGGTCATACCAAAGATTCCCAAAATGGTACTTGATGCCTCT
CTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGAAAGAGGAGCCTTCGGGTCGCCTCCGACTGCGGTC
GCAGACTTACTTACTTAATATATAAGGATCTGATGAAGGTAGCATTCCTC
TGTATTTTCTAGCGATAAACAAATGAGTGATTTAAATTGTTTTTGACTTT
ATTGAGCGTATCGAAAAATTCCAAAAACAGTGTAATGATTAATACGCACT
TTTCTCAATTCTTTTGTAGCTTCTTACGCCCTTGAGGTTGAAAAGATCAC
TGGTACCACACCACCAGCTGTACCGTGCCCAGACTCCCTCTGCAAAGGAA
AAGCTGACGGAAACTTCGAATACTACTACTATGGCCAATACAGAAGCAAC
TATTTCGTCCAATGCTCAAATGGATTAGCTGCCTGTCAACCATGTTTCCC
ATTGTCTTTGGAATTCAGTCAATCATGCAACCAATGTCTTTACAATAAAC
AGGGTAAGAATGGTTGAGAATTTTTTTGTTTTCACAAAAAACCTCAGCCC
TTAAAACACCAATAATGAATCGGTACAATTAAGAAATAAAAGACCAAAGT
GAACAGATAGCCTTATTTAAAATATAATCATAATTTGAAACAAGAATCAA
GTTTTCGGTTTAGTTCCATATGTGTTCCTTGGTATTGTAAACTAGATGCA
TTAAAGCAACTAAATTTATATTAAGTCATTTGATAGAAAAACGTACAAAA
ATGAATGTTCTGCTCGTATTGTTTATCCGATTATACACCCCTGTGTCACA
GACCCGTTGGGACCCCAGCCCCACAGAAAAATTTAGCGAAAATTTCGTCT
TCGGTGGGACGTTCCCTGGAATTTCAGCCCCACTTTGACTTCATCCCCAC
TCGAAATTCAATGTTTAAAAACTGCACTCCAAAATCATCCCCACTTGGTC
TTTCCACCTTGGAACAAAAAGAATTTTTATCCCCATTGGGATTTCAATAG
GAATTTTTATCCCCATTGAGGAAAATAGTTCGGCTGGGGTGTGATTATGT
ACACTAAACGTTGACTTGGAGCAAGTTTTTAACCTGTTGTCCTTTTTTCA
TTTAGACGATTGTGTTACCACACAACCATGGGAACCAGCAACCACTTTAA
AATGCACTGATATTTGCCCAACACGAGGACCTGAATTCAGTGGCAACATT
GAAGATCCACACAGCCCATTCCAATACATTGCCTGCTGGAAGGGAGTCAC
TGTAGGATGTGTTGCTTGCCCAAGTGGTTTACAATTCAACGAGAAATGGA
ATGCCTGTTTGTTTGATGGTATCTACAAGACTGCCCCATCTCACTAAATT
CTTTGATATTCCAACATTGATTTATATCATGTACTGGATACATGTGCTTT
GGATATTGATTGACCAAAGTCAAAAAAACGAAAATTTTTGTAACATTTGA
TAAGTATTTGTAATCATTATTTTTAATTGAAATTTGTATTTAACTTCGAA
ACTATTTTTTTGAAGAATCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006384XLOC_006384Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011387-exon-sc0000127-1575043694:244729..244820TCONS_00011387-exon-sc0000127-1575043694:244729..244820Clytia hemisphaericaexon
TCONS_00011387-exon-sc0000127-1575043694:243923..244090TCONS_00011387-exon-sc0000127-1575043694:243923..244090Clytia hemisphaericaexon
TCONS_00011387-exon-sc0000127-1575043694:242868..243101TCONS_00011387-exon-sc0000127-1575043694:242868..243101Clytia hemisphaericaexon
TCONS_00011387-exon-sc0000127-1575043694:241850..242265TCONS_00011387-exon-sc0000127-1575043694:241850..242265Clytia hemisphaericaexon
TCONS_00011387-exon-sc0000127-1510915933:244729..244820TCONS_00011387-exon-sc0000127-1510915933:244729..244820Clytia hemisphaericaexon
TCONS_00011387-exon-sc0000127-1510915933:243923..244090TCONS_00011387-exon-sc0000127-1510915933:243923..244090Clytia hemisphaericaexon
TCONS_00011387-exon-sc0000127-1510915933:242868..243101TCONS_00011387-exon-sc0000127-1510915933:242868..243101Clytia hemisphaericaexon
TCONS_00011387-exon-sc0000127-1510915933:241850..242265TCONS_00011387-exon-sc0000127-1510915933:241850..242265Clytia hemisphaericaexon
TCONS_00011387-exon-sc0000127-1491911889:244729..244820TCONS_00011387-exon-sc0000127-1491911889:244729..244820Clytia hemisphaericaexon
TCONS_00011387-exon-sc0000127-1491911889:243923..244090TCONS_00011387-exon-sc0000127-1491911889:243923..244090Clytia hemisphaericaexon
TCONS_00011387-exon-sc0000127-1491911889:242868..243101TCONS_00011387-exon-sc0000127-1491911889:242868..243101Clytia hemisphaericaexon
TCONS_00011387-exon-sc0000127-1491911889:241850..242265TCONS_00011387-exon-sc0000127-1491911889:241850..242265Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000127supercontigsc0000127:241850..244820 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.721194	0.795334	0.114607	0.112125	0.136501	0.161798	0.0650674	0.304576	0.258745	0.412879	0.0512749	0.567846	2.00688	51.8937	330.101	33.6413	3.47699	0.272772	0.161399	0.196044	0	0	0.232115	0.263782	0.198151	0	0	0	0.0561734	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011387 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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