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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011274 ID=TCONS_00011274|Name=TCONS_00011274|organism=Clytia hemisphaerica|type=transcript|length=2811bpRun BLAST on NCBI protein sequence of TCONS_00011274-protein >TCONS_00011274-protein ID=TCONS_00011274-protein|Name=TCONS_00011274-protein|organism=Clytia hemisphaerica|type=polypeptide|length=786bp MSVTFYLETKIYAKNMLKMNKDSDAEHLHNGKAVISDQGTEQSIEVSFEPRun BLAST on NCBI transcript from alignment at sc0000124:255588..262131+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011274 ID=TCONS_00011274|Name=TCONS_00011274|organism=Clytia hemisphaerica|type=transcript|length=6544bp|location=Sequence derived from alignment at sc0000124:255588..262131+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000124:255588..262131+ >TCONS_00011274 ID=TCONS_00011274|Name=TCONS_00011274|organism=Clytia hemisphaerica|type=CDS|length=7083bp|location=Sequence derived from alignment at sc0000124:255588..262131+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011274 vs. Swiss-Prot (Human)
Match: ZN112 (Zinc finger protein 112 OS=Homo sapiens GN=ZNF112 PE=1 SV=2) HSP 1 Score: 289.656 bits (740), Expect = 4.534e-83 Identity = 146/338 (43.20%), Postives = 198/338 (58.58%), Query Frame = 1
Query: 1267 YSCKTCHQIFTRKGNLKQHMKIHTRDNEIKCEVCGKRFVRMSNFTTHLRTHTGEKPHQCDFCPMRFGRSDHLKEHLRSHTGERPYNCETCDKSFFTGTALKNHNRIHTGEKPYKCKKCQESFRQQSMLIYHLESKCGDCKFTCETCSKTFTSSRGLREHMLCHSTERPHKCTVCEKSFVRLSHLREHTLTHMPADHEAYHCPVCAQTFSTKGKLSRHKSMHSEKPPPVCDVCGKEFKVLGDMRLHKKRVHSTERPYKCEVCPKTFAQRSNLKKHLRLHTGEKPFKCEFCGTCFAQNGNLESHKRTHTGEKPYQCDQCESRFAQLSNLKKHALTHHQSK 2280
Y C+ C + F+R L+ H ++HT + KCE CGK F R S H R HTGEKP++C+ C F RS HL+ H R HTGE+P+ CE C K F L+ H R+HTGEKPYKC++C + F + S L+ H G+ + C+ C K+F+ L+ H HS ERP+ C VC K F + ++L+ H H + Y C +C + FS +L H+ +H+ P C+VC K F ++ H +RVH RPYKCE C K F+ S+L+ H R+HTGEKP+KCE CG F+Q NL++H+R HTGEKPY+CD C F S L H H K
Sbjct: 553 YKCEECDKGFSRSSYLQAHQRVHTGEKPYKCEECGKGFSRNSYLQGHQRVHTGEKPYKCEECGKGFSRSSHLQGHQRVHTGEKPFKCEECGKGFSWSFNLQIHQRVHTGEKPYKCEECGKGFSKASTLLAHQRVHTGEKPYQCDECGKSFSQRSYLQSHQSVHSGERPYICEVCGKGFSQRAYLQGHQRVHTRV--KPYKCEMCGKGFSQSSRLEAHRRVHTGGKPYKCEVCTKGFSESSRLQAH-QRVHVEGRPYKCEQCGKGFSGYSSLQAHHRVHTGEKPYKCEVCGKGFSQRSNLQAHQRVHTGEKPYKCDACGKGFRWSSGLLIHQRVHSSDK 887 HSP 2 Score: 274.248 bits (700), Expect = 1.184e-77 Identity = 137/325 (42.15%), Postives = 191/325 (58.77%), Query Frame = 1
Query: 1294 FTRKGNLKQHMKIHTRDNEIKCEVCGKRFVRMSNFTTHLRTHTGEKPHQCDFCPMRFGRSDHLKEHLRSHTGERPYNCETCDKSFFTGTALKNHNRIHTGEKPYKCKKCQESFRQQSMLIYHLESKCGDCKFTCETCSKTFTSSRGLREHMLCHSTERPHKCTVCEKSFVRLSHLREHTLTHMPADHEAYHCPVCAQTFSTKGKLSRHKSMHSEKPPPVCDVCGKEFKVLGDMRLHKKRVHSTERPYKCEVCPKTFAQRSNLKKHLRLHTGEKPFKCEFCGTCFAQNGNLESHKRTHTGEKPYQCDQCESRFAQLSNLKKHALTH 2268
F LK H ++HT KC +CGK F S H R HTGEKP++C+ C F RS +L+ H R HTGE+PY CE C K F + L+ H R+HTGEKPYKC++C + F + S L H G+ F CE C K F+ S L+ H H+ E+P+KC C K F + S L H H + Y C C ++FS + L H+S+HS + P +C+VCGK F ++ H +RVH+ +PYKCE+C K F+Q S L+ H R+HTG KP+KCE C F+++ L++H+R H +PY+C+QC F+ S+L+ H H
Sbjct: 506 FNWSSKLKDHQRVHTGQKPYKCNICGKGFNHRSVLNVHQRVHTGEKPYKCEECDKGFSRSSYLQAHQRVHTGEKPYKCEECGKGFSRNSYLQGHQRVHTGEKPYKCEECGKGFSRSSHLQGHQRVHTGEKPFKCEECGKGFSWSFNLQIHQRVHTGEKPYKCEECGKGFSKASTLLAHQRVH--TGEKPYQCDECGKSFSQRSYLQSHQSVHSGERPYICEVCGKGFSQRAYLQGH-QRVHTRVKPYKCEMCGKGFSQSSRLEAHRRVHTGGKPYKCEVCTKGFSESSRLQAHQRVHVEGRPYKCEQCGKGFSGYSSLQAHHRVH 827 HSP 3 Score: 271.937 bits (694), Expect = 7.382e-77 Identity = 136/334 (40.72%), Postives = 192/334 (57.49%), Query Frame = 1
Query: 1267 YSCKTCHQIFTRKGNLKQHMKIHTRDNEIKCEVCGKRFVRMSNFTTHLRTHTGEKPHQCDFCPMRFGRSDHLKEHLRSHTGERPYNCETCDKSFFTGTALKNHNRIHTGEKPYKCKKCQESFRQQSMLIYHLESKCGDCKFTCETCSKTFTSSRGLREHMLCHSTERPHKCTVCEKSFVRLSHLREHTLTHMPADHEAYHCPVCAQTFSTKGKLSRHKSMHSEKPPPVCDVCGKEFKVLGDMRLHKKRVHSTERPYKCEVCPKTFAQRSNLKKHLRLHTGEKPFKCEFCGTCFAQNGNLESHKRTHTGEKPYQCDQCESRFAQLSNLKKHALTH 2268
Y C C + F + L H ++HT + KCE C K F R S H R HTGEKP++C+ C F R+ +L+ H R HTGE+PY CE C K F + L+ H R+HTGEKP+KC++C + F L H G+ + CE C K F+ + L H H+ E+P++C C KSF + S+L+ H H + Y C VC + FS + L H+ +H+ P C++CGK F + H +RVH+ +PYKCEVC K F++ S L+ H R+H +P+KCE CG F+ +L++H R HTGEKPY+C+ C F+Q SNL+ H H
Sbjct: 525 YKCNICGKGFNHRSVLNVHQRVHTGEKPYKCEECDKGFSRSSYLQAHQRVHTGEKPYKCEECGKGFSRNSYLQGHQRVHTGEKPYKCEECGKGFSRSSHLQGHQRVHTGEKPFKCEECGKGFSWSFNLQIHQRVHTGEKPYKCEECGKGFSKASTLLAHQRVHTGEKPYQCDECGKSFSQRSYLQSHQSVH--SGERPYICEVCGKGFSQRAYLQGHQRVHTRVKPYKCEMCGKGFSQSSRLEAH-RRVHTGGKPYKCEVCTKGFSESSRLQAHQRVHVEGRPYKCEQCGKGFSGYSSLQAHHRVHTGEKPYKCEVCGKGFSQRSNLQAHQRVH 855 HSP 4 Score: 266.159 bits (679), Expect = 7.235e-75 Identity = 137/327 (41.90%), Postives = 187/327 (57.19%), Query Frame = 1
Query: 1267 YSCKTCHQIFTRKGNLKQHMKIHTRDNEIKCEVCGKRFVRMSNFTTHLRTHTGEKPHQCDFCPMRFGRSDHLKEHLRSHTGERPYNCETCDKSFFTGTALKNHNRIHTGEKPYKCKKCQESFRQQSMLIYHLESKCGDCKFTCETCSKTFTSSRGLREHMLCHSTERPHKCTVCEKSFVRLSHLREHTLTHMPADHEAYHCPVCAQTFSTKGKLSRHKSMHSEKPPPVCDVCGKEFKVLGDMRLHKKRVHSTERPYKCEVCPKTFAQRSNLKKHLRLHTGEKPFKCEFCGTCFAQNGNLESHKRTHTGEKPYQCDQCESRFAQLSNL 2247
Y C+ C + F+R L+ H ++HT + KCE CGK F R S+ H R HTGEKP +C+ C F S +L+ H R HTGE+PY CE C K F + L H R+HTGEKPY+C +C +SF Q+S L H G+ + CE C K F+ L+ H H+ +P+KC +C K F + S L H H + Y C VC + FS +L H+ +H E P C+ CGK F ++ H RVH+ E+PYKCEVC K F+QRSNL+ H R+HTGEKP+KC+ CG F + L H+R H+ +K Y+ + + NL
Sbjct: 581 YKCEECGKGFSRNSYLQGHQRVHTGEKPYKCEECGKGFSRSSHLQGHQRVHTGEKPFKCEECGKGFSWSFNLQIHQRVHTGEKPYKCEECGKGFSKASTLLAHQRVHTGEKPYQCDECGKSFSQRSYLQSHQSVHSGERPYICEVCGKGFSQRAYLQGHQRVHTRVKPYKCEMCGKGFSQSSRLEAHRRVHTGG--KPYKCEVCTKGFSESSRLQAHQRVHVEGRPYKCEQCGKGFSGYSSLQAHH-RVHTGEKPYKCEVCGKGFSQRSNLQAHQRVHTGEKPYKCDACGKGFRWSSGLLIHQRVHSSDKFYKSEDYGKDYPSSENL 904 HSP 5 Score: 247.284 bits (630), Expect = 1.378e-68 Identity = 136/334 (40.72%), Postives = 182/334 (54.49%), Query Frame = 1
Query: 1267 YSCKTCHQIFTRKGNLKQHMKIHTRDNEIKCEVCGKRFVRMSNFTTHLRTHTGEKPHQCDFCPMRFGRSDHLKEHLRSHTGERPYNCETCDKSFFTGTALKNHNRIHTGEKPYKCKKCQESFRQQSMLIYHLESKCGDCKFTCETCSKTFTSSRGLREHMLCHSTERPHKCTVCEKSFVRLSHLREHTLTHMPADHEAYHCPVCAQTFSTKGKLSRHKSMHSEKPPPVCDVCGKEFKVLGDMRLHKKRVHSTERPYKCEVCPKTFAQRSNLKKHLRLHTGEKPFKCEFCGTCFAQNGNLESHKRTHTGEKPYQCDQCESRFAQLSNLKKHALTH 2268
Y C F+ L+ H KIH + K G F S H R HTG+KP++C+ C F L H R HTGE+PY CE CDK F + L+ H R+HTGEKPYKC++C + F + S L H G+ + CE C K F+ S L+ H H+ E+P KC C K F +L+ H H + Y C C + FS L H+ +H+ + P CD CGK F ++ H+ VHS ERPY CEVC K F+QR+ L+ H R+HT KP+KCE CG F+Q+ LE+H+R HTG KPY+C+ C F++ S L+ H H
Sbjct: 471 YKRYVCSNSFSHNLYLQGHPKIHIGEKPRKEH--GNGFNWSSKLKDHQRVHTGQKPYKCNICGKGFNHRSVLNVHQRVHTGEKPYKCEECDKGFSRSSYLQAHQRVHTGEKPYKCEECGKGFSRNSYLQGHQRVHTGEKPYKCEECGKGFSRSSHLQGHQRVHTGEKPFKCEECGKGFSWSFNLQIHQRVH--TGEKPYKCEECGKGFSKASTLLAHQRVHTGEKPYQCDECGKSFSQRSYLQSHQS-VHSGERPYICEVCGKGFSQRAYLQGHQRVHTRVKPYKCEMCGKGFSQSSRLEAHRRVHTGGKPYKCEVCTKGFSESSRLQAHQRVH 799 HSP 6 Score: 207.223 bits (526), Expect = 2.316e-55 Identity = 121/352 (34.38%), Postives = 176/352 (50.00%), Query Frame = 1
Query: 1291 IFTRKGNLKQHMKIHTRDNEIKCEVCGKRFVRMSNFTTHLRTHTGEKPHQCDFCPMRFGRSDHLKEHLRSHTGERPYNCETCDKSFFTGTALKNHNRIH--------------------------TGEKPYKCKKCQESFRQQSMLIYHLESKCGDCKFTCETCSKTFTSSRGLREHMLCHSTERPHKCTVCEKSFVRLSHLREHTLTHMPADHEAYHCPVCAQTFSTKGKLSRHKSMHSEKPPPVCDVCGKEFKVLGDMRLHKKRVHSTERPYKCEVCPKTFAQRSNLKKHLRLHTGEKPFKCEFCGTCFAQNGNLESHKRTHTGEKPYQCDQCESRFAQLSNLKKHALTH 2268
+F + L+ H KIHT + GK F+ SN R H E + + C F + H ++ HT E+PY C SF L+ H +IH TG+KPYKC C + F +S+L H G+ + CE C K F+ S L+ H H+ E+P+KC C K F R S+L+ H H + Y C C + FS L H+ +H+ + P C+ CGK F ++++H +RVH+ E+PYKCE C K F++ S L H R+HTGEKP++C+ CG F+Q L+SH+ H+GE+PY C+ C F+Q + L+ H H
Sbjct: 395 VFNQSSCLQVHQKIHTEEKLYTDIEYGKSFICSSNLDIQHRVHMEENSYNSEECGNGFSLASHFQDLQIVHTKEQPYKRYVCSNSFSHNLYLQGHPKIHIGEKPRKEHGNGFNWSSKLKDHQRVHTGQKPYKCNICGKGFNHRSVLNVHQRVHTGEKPYKCEECDKGFSRSSYLQAHQRVHTGEKPYKCEECGKGFSRNSYLQGHQRVH--TGEKPYKCEECGKGFSRSSHLQGHQRVHTGEKPFKCEECGKGFSWSFNLQIH-QRVHTGEKPYKCEECGKGFSKASTLLAHQRVHTGEKPYQCDECGKSFSQRSYLQSHQSVHSGERPYICEVCGKGFSQRAYLQGHQRVH 743 HSP 7 Score: 178.333 bits (451), Expect = 8.702e-46 Identity = 108/319 (33.86%), Postives = 166/319 (52.04%), Query Frame = 1
Query: 1312 LKQHMKIHTRDNEIKCEVCGKRFVRMSNFTTHLRTHTGEKPHQCDFCPMRFGRSDHLKEHLRSHTGERPYNCETCDKSFFTGTALKNHNRIHTGEKPYKCKKCQESFRQQSMLIYHLESKCGDCKFTCETCSKTFTSSRGLREHMLCHSTERPHKCTVCEKSFVRLSHLREHTLTHMPADHEAYHCPVCAQTFSTKGKLSRHKSMHSEKPPPVCDVCGKEFKVLGDMRLHKKRVHSTERPYKCEVCPKTFAQRSNLKKHLRLHTGEKPFKCEFCGTCFAQNGNLESHKRTHTGEKPYQCDQCESRFAQLSNLKKHALTH 2268
LK + ++HT + KC G+ F S T+ HTGE ++ + F S L R HT + P+ E + F + L+ H +IHT EK Y + +SF S L + + E C F+ + ++ + H+ E+P+K VC SF +L+ H H+ H F+ KL H+ +H+ + P C++CGK F + +H +RVH+ E+PYKCE C K F++ S L+ H R+HTGEKP+KCE CG F++N L+ H+R HTGEKPY+C++C F++ S+L+ H H
Sbjct: 318 LKSYQRVHTEEKPCKCGEYGENFNHCSPLNTYELIHTGEMSYRHNIYEKAFSHSLDLNSIFRVHTRDEPHEYEENENVFNQSSCLQVHQKIHTEEKLYTDIEYGKSFICSSNLDIQHRVHMEENSYNSEECGNGFSLASHFQDLQIVHTKEQPYKRYVCSNSFSHNLYLQGHPKIHIGEKPRKEH----GNGFNWSSKLKDHQRVHTGQKPYKCNICGKGFNHRSVLNVH-QRVHTGEKPYKCEECDKGFSRSSYLQAHQRVHTGEKPYKCEECGKGFSRNSYLQGHQRVHTGEKPYKCEECGKGFSRSSHLQGHQRVH 631 HSP 8 Score: 121.709 bits (304), Expect = 4.394e-28 Identity = 100/383 (26.11%), Postives = 160/383 (41.78%), Query Frame = 1
Query: 1324 MKIHTRDNEIKCEVCGKRFVRMSNFTTHLRTHTGEKPHQCDFCPMRFGRSDHLKEHLRSHTGERPYNCETCDKS-----------------FFTGTALKNHNRIHTGEKPYKCKKCQESFRQQSMLIYHLESKCGDCKFTCETCSKTFTSSRGLREHMLCHSTERPHKCTVCEKSFVRLSHLREHTLTH--------------------------MPADHEAYHCPVCAQTFSTKGKLSRHKSMHSEKPPPVCDVCGKEFK----VLGDMRLH---------------------KKRVHSTERPYKCEVCPKTFAQRSNLKKHLRLHTGEKPFKCEFCGTCFAQNGNLESHKRTHTGEKPYQCDQCESRFAQLSNLKKHALTH 2268
+++H ++N C CG+ +++S T EKP+ C F + H + H +PY +C K + LK++ R+HT EKP KC + E+F S L + G+ + K F+ S L H+ + PH+ E F + S L+ H H + + +Y+ C FS + +H+++ P VC F + G ++H +RVH+ ++PYKC +C K F RS L H R+HTGEKP+KCE C F+++ L++H+R HTGEKPY+C++C F++ S L+ H H
Sbjct: 223 LEVHRKEN-YSCHDCGEDIMKVS-LLNQESIQTEEKPYPCTGYRKAFSNDSSSEVHQQFHLEGKPYTYSSCGKGCNYSSLLHIHQNIEREDDIENSHLKSYQRVHTEEKPCKCGEYGENFNHCSPLNTYELIHTGEMSYRHNIYEKAFSHSLDLNSIFRVHTRDEPHEYEENENVFNQSSCLQVHQKIHTEEKLYTDIEYGKSFICSSNLDIQHRVHMEENSYNSEECGNGFSLASHFQDLQIVHTKEQPYKRYVCSNSFSHNLYLQGHPKIHIGEKPRKEHGNGFNWSSKLKDHQRVHTGQKPYKCNICGKGFNHRSVLNVHQRVHTGEKPYKCEECDKGFSRSSYLQAHQRVHTGEKPYKCEECGKGFSRNSYLQGHQRVH 603 The following BLAST results are available for this feature:
BLAST of TCONS_00011274 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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