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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011269 ID=TCONS_00011269|Name=TCONS_00011269|organism=Clytia hemisphaerica|type=transcript|length=3478bpRun BLAST on NCBI protein sequence of TCONS_00011269-protein >TCONS_00011269-protein ID=TCONS_00011269-protein|Name=TCONS_00011269-protein|organism=Clytia hemisphaerica|type=polypeptide|length=660bp MFKLKGSTQLILNSTKNVKAAVNHHNRVTTTALRWAHSDSEYLQNSKIPTRun BLAST on NCBI transcript from alignment at sc0000124:186737..200707+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011269 ID=TCONS_00011269|Name=TCONS_00011269|organism=Clytia hemisphaerica|type=transcript|length=13971bp|location=Sequence derived from alignment at sc0000124:186737..200707+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000124:186737..200707+ >TCONS_00011269 ID=TCONS_00011269|Name=TCONS_00011269|organism=Clytia hemisphaerica|type=CDS|length=23796bp|location=Sequence derived from alignment at sc0000124:186737..200707+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011269 vs. Swiss-Prot (Human)
Match: CPT2 (Carnitine O-palmitoyltransferase 2, mitochondrial OS=Homo sapiens GN=CPT2 PE=1 SV=2) HSP 1 Score: 667.537 bits (1721), Expect = 0.000e+0 Identity = 328/628 (52.23%), Postives = 434/628 (69.11%), Query Frame = 1
Query: 157 EYLQNSKIPTMHFQKSLPRLAIPKLEDTMTRYMESQKPLLNQDEFAKTQKIADDFMKGDGKALHDELVAMDKQNKHTSYISGPWFDMYLKYRDSIVLNHNPFILTADDPHT--TDQLTRATKLIHAALRFKKSLEAGNLEPDVYHLNPKKSDTDRFRTLCRMTPSALSWYTAYLQKAFPLDMSQYGRLFNSTRVPAPEKDILKTNKDGRHILVIRNGNIFTFDAIKADGSFLTRDEIHTNLNSIIEQSHTKADHPLAVLTSEHRDTWAAARSHLISNPNNAELLDKIDSAIFGIFLDDRVCNDENDATEMFLYGEGDSRWFDKSFHMALSSNARMAINFEHAWGDGVAVVRFLNEVCETSAKDTYTPAQS----SDGAMSAQKLNFDLDESTKTSIKTAMDTFKDRTSKVGINAVRIEGFGKSFLKTKKMSPDAMMQLSFQLAHYRQHGKHAATYESCSTAAFKHGRTETMRPCTTATAAVCEAF-EKGNNANVETMVGLLQETSNVHGELTKNAAMGQGFDRHLFAMRYISQQTGQSVP-FFQDPAYANINHIILSTSTVFSPNIQMGGFAPVVPDGLGVGYMVNDDWVGCNASSYPGSPNAGEFVELVHQSILDIKAVLEGRNFKS 2016
+YLQ S +PTMH+Q SLPRL IPKLEDT+ RY+ +QKPLLN +F KT++ F G GK LH++LVA+DKQNKHTSYISGPWFDMYL RDS+VLN NPF+ DP + DQLTRAT + +A+RF K+L AG LEP+V+HLNP KSDT F+ L R PS+LSWY AYL A+PLDMSQY RLFNSTR+P P +D L T+ RH+LV+R GN + FD + DG+ ++ EI +L I+ S + PLA LTSE+RD WA R L+S+ N E L K+DSA+F + LDD D + L+G+G +RWFDKSF++ ++ + A++FEH+WGDGVAV+RF NEV + S + QS +D ++ QKLNF+L ++ KT I A + F + I+ V+ + GK FLK +K+SPDA+ QL+FQ+A RQ+G+ ATYESCSTAAFKHGRTET+RP + T EAF + + + + ++ E S HG+LTK AAMGQGFDRHLFA+R+++ G +P + DPAY INH +LSTST+ SP + +GGFAPVV DG GVGY V+D+W+GCN SSYPG NA EF++ V +++ D+ LEG++ KS
Sbjct: 33 QYLQRSIVPTMHYQDSLPRLPIPKLEDTIRRYLSAQKPLLNDGQFRKTEQFCKSFENGIGKELHEQLVALDKQNKHTSYISGPWFDMYLSARDSVVLNFNPFMAFNPDPKSEYNDQLTRATNMTVSAIRFLKTLRAGLLEPEVFHLNPAKSDTITFKRLIRFVPSSLSWYGAYLVNAYPLDMSQYFRLFNSTRLPKPSRDELFTDDKARHLLVLRKGNFYIFDVLDQDGNIVSPSEIQAHLKYILSDSSPAPEFPLAYLTSENRDIWAELRQKLMSS-GNEESLRKVDSAVFCLCLDDFPIKDLVHLSHNMLHGDGTNRWFDKSFNLIIAKDGSTAVHFEHSWGDGVAVLRFFNEVFKDSTQTPAVTPQSQPATTDSTVTVQKLNFELTDALKTGITAAKEKFDATMKTLTIDCVQFQRGGKEFLKKQKLSPDAVAQLAFQMAFLRQYGQTVATYESCSTAAFKHGRTETIRPASVYTKRCSEAFVREPSRHSAGELQQMMVECSKYHGQLTKEAAMGQGFDRHLFALRHLAAAKGIILPELYLDPAYGQINHNVLSTSTLSSPAVNLGGFAPVVSDGFGVGYAVHDNWIGCNVSSYPGR-NAREFLQCVEKALEDMFDALEGKSIKS 658 The following BLAST results are available for this feature:
BLAST of TCONS_00011269 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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