TCONS_00011159 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011159
Unique NameTCONS_00011159
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length395

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011159 ID=TCONS_00011159|Name=TCONS_00011159|organism=Clytia hemisphaerica|type=transcript|length=395bp
AACAAATTGGACCATTTAAAAAatacccaatgaagtataagcctaATTCT
ATCCCtccgggcttatacttcattagTTATACCCCTTATGTTAAGCTTGA
CAGAGTTTTAAACGCAATATATTTTATTCCATTTAATATACACGACTTTT
CGAGTTCTTTTTCTGCCAATTGTGCCTTACGTTTCCAAGTTATCTGCACT
TTAAGccgttttattctttttgttctTTCAGATGAAGATTCATTCTTACA
GGGCTGAACATAATCAATTTTCGACGCAAGGCataatctttttatttcaa
gttcattggctttaattttttcaagttcattggctttaattttctgatta
tttgaCAACTGTAATTGCTATTTCGTGTTGTTGTTAGCTTTTTTG
Run BLAST on NCBI

transcript from alignment at sc0000121:588769..589163

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011159 ID=TCONS_00011159|Name=TCONS_00011159|organism=Clytia hemisphaerica|type=transcript|length=395bp|location=Sequence derived from alignment at sc0000121:588769..589163 (Clytia hemisphaerica)
CAAAAAAGCTAACAACAACACGAAATAGCAATTACAGTTGtcaaataatc
agaaaattaaagccaatgaacttgaaaaaattaaagccaatgaacttgaa
ataaaaagattatGCCTTGCGTCGAAAATTGATTATGTTCAGCCCTGTAA
GAATGAATCTTCATCTGAAagaacaaaaagaataaaacggCTTAAAGTGC
AGATAACTTGGAAACGTAAGGCACAATTGGCAGAAAAAGAACTCGAAAAG
TCGTGTATATTAAATGGAATAAAATATATTGCGTTTAAAACTCTGTCAAG
CTTAACATAAGGGGTATAActaatgaagtataagcccggaGGGATAGAAT
taggcttatacttcattgggtatTTTTTAAATGGTCCAATTTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006255XLOC_006255Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011159-exon-sc0000121-1491911889:588769..589163TCONS_00011159-exon-sc0000121-1491911889:588769..589163Clytia hemisphaericaexon
TCONS_00011159-exon-sc0000121-1510915933:588769..589163TCONS_00011159-exon-sc0000121-1510915933:588769..589163Clytia hemisphaericaexon
TCONS_00011159-exon-sc0000121-1575043694:588769..589163TCONS_00011159-exon-sc0000121-1575043694:588769..589163Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000121supercontigsc0000121:588769..589163 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.381481	0.186002	0.215966	1.26774	0.257224	0.203262	0.490454	0.688736	1.28587	0.597283	0.193246	0.635161	0.507422	1.31741	1.1914	0.813623	0.429565	1.32087	2.23038	0.42435	0.922094	1.88901	1.0935	0.994147	1.02395	0	1.8308	0.558252	2.32878	0.862784
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011159 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top