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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011147 ID=TCONS_00011147|Name=TCONS_00011147|organism=Clytia hemisphaerica|type=transcript|length=1532bp
CAAACATTTGGTGGAGTCACAACCAACACCCTTTGAAGAAGAACCGAACT
CAGAAACACGTGAGGAGATCGTTAGTGACGGGGAGCCAATGGACGAACGA
GAAGCGTGGAATAAGCCTGAACAAGAGGTTGATAGTAATAAACAAAATGA
AGAGACAGCTGCTTCTAAAGGACAGATCTATCATTATACAGTACCAGTTA
ATAATCGTGGATATAAACCAGCTGTTACTGAGGAACCTTATGCTGAGATG
CAGCGAGAGGAGGATAAGGTGCATCAGGATGAAGCTGACGAGGAACGGAT
TCAGGATACTGCAGCAGGTAGGGAGCTAACCAGTATGGGGTCAAATACTG
GCAGTACTACAAGTGAGACTATGATCGATGTGGTTGAGGATGAGAAGAAG
GAACCATCGAAGAATAGTGAGGATTTGGTGAAGCAGGTTCAACAGGATCt
ggagaaagaagaaaaagacgAGGAAGCGAAATTGAATGCTGAGAAGGCAG
ATCAAAAGGCCATGACAAAGGAAGCTGTAGAGTATGGTAAGATTGGAGGA
GAAGAGAGTCCTTTGGCGAAAGAGaaagaagaggaagaagaagaagaagc
aaTCTTGAAAGCAGAGAAATCAGAAACTGGAAACACGAGGGAAAATGAGG
ATAAGAAGGCGTTGGAGAAACAGCTTGATGATAATGATAAGGAAGCAGCA
TTGAAGAAGAAGGAACAGGAAAACGAACAGCTGAAGAAACAGAAAGAGGA
AGCGGAAAAGAAATTGAAGGCAGAACAAACTGAGAAGGCTAAATTGAAAG
ATCAAATGAAGGAGCAGGAGGAGGAGTTTGAGAAGCAAAggaaagatgaa
aaagaagCACAACAGAAAGACAAAGAGGAATTCCAAAAGAAGCAGGAGGA
ACGACGAGAGAAAGCTGAGAAAGAGAACCAGAAGAAGCTGGAACAGCAGA
AAAAGGATTCCGAAGAGAAATTGGAACAGGAAAATAAGAAAGGAGACACT
AAAGCGGATCAGGAAAGGAAAGAAGCTGACAAGGTTGAGAAGCAGAAACA
GATACAAGAAGAACAAGTGGAAAGGACGAAGAAGGAGAAAGAGCAAttgg
aaaaggaaaaaaaagaatcGGAAGAAAACTTGGAAAAGGAACAGAACAAG
ATGGATGCTGAAATGAGGGAACAGAAATCCGCAAAAGAGAAATTGGAAAc
ggaaaagatgaaaaatgaagcaaaaatgAAGGGTGAGACGAAAGAAGCTG
AGCAGAAATTGAAGAAGGAGAAATcagaaaaggagaaaatagaaGCTGAG
AAAAAGGAGATAAAAGATAAGCTGGAAGAAGAACGGAAAAAGAGTCAGGA
CACGAAGGagaaaaatgaggaaaagtTAAAGAAAGCGGAACAAAAGCAGA
AGGATCTGGAAATAGAAAAGAAGGAATTGGAAGAGAAGGTGAAAAACCAA
GAGAAAGAACAACAAGAGAGGGTggaaaaggcaaaaaaagaaGCTGAAGA
AAAagcgaaaaaggaaaagaaggaAGTTGAAG Run BLAST on NCBI protein sequence of TCONS_00011147-protein >TCONS_00011147-protein ID=TCONS_00011147-protein|Name=TCONS_00011147-protein|organism=Clytia hemisphaerica|type=polypeptide|length=510bp
KHLVESQPTPFEEEPNSETREEIVSDGEPMDEREAWNKPEQEVDSNKQNE
ETAASKGQIYHYTVPVNNRGYKPAVTEEPYAEMQREEDKVHQDEADEERI
QDTAAGRELTSMGSNTGSTTSETMIDVVEDEKKEPSKNSEDLVKQVQQDL
EKEEKDEEAKLNAEKADQKAMTKEAVEYGKIGGEESPLAKEKEEEEEEEA
ILKAEKSETGNTRENEDKKALEKQLDDNDKEAALKKKEQENEQLKKQKEE
AEKKLKAEQTEKAKLKDQMKEQEEEFEKQRKDEKEAQQKDKEEFQKKQEE
RREKAEKENQKKLEQQKKDSEEKLEQENKKGDTKADQERKEADKVEKQKQ
IQEEQVERTKKEKEQLEKEKKESEENLEKEQNKMDAEMREQKSAKEKLET
EKMKNEAKMKGETKEAEQKLKKEKSEKEKIEAEKKEIKDKLEEERKKSQD
TKEKNEEKLKKAEQKQKDLEIEKKELEEKVKNQEKEQQERVEKAKKEAEE
KAKKEKKEVE Run BLAST on NCBI transcript from alignment at sc0000121:348213..349744 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011147 ID=TCONS_00011147|Name=TCONS_00011147|organism=Clytia hemisphaerica|type=transcript|length=1532bp|location=Sequence derived from alignment at sc0000121:348213..349744 (Clytia hemisphaerica)
CTTCAACTtccttcttttcctttttcgctTTTTCTTCAGCttcttttttt
gccttttccACCCTCTCTTGTTGTTCTTTCTCTTGGTTTTTCACCTTCTC
TTCCAATTCCTTCTTTTCTATTTCCAGATCCTTCTGCTTTTGTTCCGCTT
TCTTTAacttttcctcatttttctCCTTCGTGTCCTGACTCTTTTTCCGT
TCTTCTTCCAGCTTATCTTTTATCTCCTTTTTCTCAGCttctattttctc
cttttctgATTTCTCCTTCTTCAATTTCTGCTCAGCTTCTTTCGTCTCAC
CCTTcatttttgcttcatttttcatcttttccgTTTCCAATTTCTCTTTT
GCGGATTTCTGTTCCCTCATTTCAGCATCCATCTTGTTCTGTTCCTTTTC
CAAGTTTTCTTCCgattcttttttttccttttccaaTTGCTCTTTCTCCT
TCTTCGTCCTTTCCACTTGTTCTTCTTGTATCTGTTTCTGCTTCTCAACC
TTGTCAGCTTCTTTCCTTTCCTGATCCGCTTTAGTGTCTCCTTTCTTATT
TTCCTGTTCCAATTTCTCTTCGGAATCCTTTTTCTGCTGTTCCAGCTTCT
TCTGGTTCTCTTTCTCAGCTTTCTCTCGTCGTTCCTCCTGCTTCTTTTGG
AATTCCTCTTTGTCTTTCTGTTGTGcttctttttcatctttccTTTGCTT
CTCAAACTCCTCCTCCTGCTCCTTCATTTGATCTTTCAATTTAGCCTTCT
CAGTTTGTTCTGCCTTCAATTTCTTTTCCGCTTCCTCTTTCTGTTTCTTC
AGCTGTTCGTTTTCCTGTTCCTTCTTCTTCAATGCTGCTTCCTTATCATT
ATCATCAAGCTGTTTCTCCAACGCCTTCTTATCCTCATTTTCCCTCGTGT
TTCCAGTTTCTGATTTCTCTGCTTTCAAGAttgcttcttcttcttcttcc
tcttctttCTCTTTCGCCAAAGGACTCTCTTCTCCTCCAATCTTACCATA
CTCTACAGCTTCCTTTGTCATGGCCTTTTGATCTGCCTTCTCAGCATTCA
ATTTCGCTTCCTcgtctttttcttctttctccaGATCCTGTTGAACCTGC
TTCACCAAATCCTCACTATTCTTCGATGGTTCCTTCTTCTCATCCTCAAC
CACATCGATCATAGTCTCACTTGTAGTACTGCCAGTATTTGACCCCATAC
TGGTTAGCTCCCTACCTGCTGCAGTATCCTGAATCCGTTCCTCGTCAGCT
TCATCCTGATGCACCTTATCCTCCTCTCGCTGCATCTCAGCATAAGGTTC
CTCAGTAACAGCTGGTTTATATCCACGATTATTAACTGGTACTGTATAAT
GATAGATCTGTCCTTTAGAAGCAGCTGTCTCTTCATTTTGTTTATTACTA
TCAACCTCTTGTTCAGGCTTATTCCACGCTTCTCGTTCGTCCATTGGCTC
CCCGTCACTAACGATCTCCTCACGTGTTTCTGAGTTCGGTTCTTCTTCAA
AGGGTGTTGGTTGTGACTCCACCAAATGTTTG Coding sequence (CDS) from alignment at sc0000121:348213..349744 >TCONS_00011147 ID=TCONS_00011147|Name=TCONS_00011147|organism=Clytia hemisphaerica|type=CDS|length=1530bp|location=Sequence derived from alignment at sc0000121:348213..349744 (Clytia hemisphaerica)
TTCAACTtccttcttttcctttttcgctTTTTCTTCAGCttctttttttg
ccttttccACCCTCTCTTGTTGTTCTTTCTCTTGGTTTTTCACCTTCTCT
TCCAATTCCTTCTTTTCTATTTCCAGATCCTTCTGCTTTTGTTCCGCTTT
CTTTAacttttcctcatttttctCCTTCGTGTCCTGACTCTTTTTCCGTT
CTTCTTCCAGCTTATCTTTTATCTCCTTTTTCTCAGCttctattttctcc
ttttctgATTTCTCCTTCTTCAATTTCTGCTCAGCTTCTTTCGTCTCACC
CTTcatttttgcttcatttttcatcttttccgTTTCCAATTTCTCTTTTG
CGGATTTCTGTTCCCTCATTTCAGCATCCATCTTGTTCTGTTCCTTTTCC
AAGTTTTCTTCCgattcttttttttccttttccaaTTGCTCTTTCTCCTT
CTTCGTCCTTTCCACTTGTTCTTCTTGTATCTGTTTCTGCTTCTCAACCT
TGTCAGCTTCTTTCCTTTCCTGATCCGCTTTAGTGTCTCCTTTCTTATTT
TCCTGTTCCAATTTCTCTTCGGAATCCTTTTTCTGCTGTTCCAGCTTCTT
CTGGTTCTCTTTCTCAGCTTTCTCTCGTCGTTCCTCCTGCTTCTTTTGGA
ATTCCTCTTTGTCTTTCTGTTGTGcttctttttcatctttccTTTGCTTC
TCAAACTCCTCCTCCTGCTCCTTCATTTGATCTTTCAATTTAGCCTTCTC
AGTTTGTTCTGCCTTCAATTTCTTTTCCGCTTCCTCTTTCTGTTTCTTCA
GCTGTTCGTTTTCCTGTTCCTTCTTCTTCAATGCTGCTTCCTTATCATTA
TCATCAAGCTGTTTCTCCAACGCCTTCTTATCCTCATTTTCCCTCGTGTT
TCCAGTTTCTGATTTCTCTGCTTTCAAGAttgcttcttcttcttcttcct
cttctttCTCTTTCGCCAAAGGACTCTCTTCTCCTCCAATCTTACCATAC
TCTACAGCTTCCTTTGTCATGGCCTTTTGATCTGCCTTCTCAGCATTCAA
TTTCGCTTCCTcgtctttttcttctttctccaGATCCTGTTGAACCTGCT
TCACCAAATCCTCACTATTCTTCGATGGTTCCTTCTTCTCATCCTCAACC
ACATCGATCATAGTCTCACTTGTAGTACTGCCAGTATTTGACCCCATACT
GGTTAGCTCCCTACCTGCTGCAGTATCCTGAATCCGTTCCTCGTCAGCTT
CATCCTGATGCACCTTATCCTCCTCTCGCTGCATCTCAGCATAAGGTTCC
TCAGTAACAGCTGGTTTATATCCACGATTATTAACTGGTACTGTATAATG
ATAGATCTGTCCTTTAGAAGCAGCTGTCTCTTCATTTTGTTTATTACTAT
CAACCTCTTGTTCAGGCTTATTCCACGCTTCTCGTTCGTCCATTGGCTCC
CCGTCACTAACGATCTCCTCACGTGTTTCTGAGTTCGGTTCTTCTTCAAA
GGGTGTTGGTTGTGACTCCACCAAATGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011147-exon-sc0000121-1491911889:348213..349744 | TCONS_00011147-exon-sc0000121-1491911889:348213..349744 | Clytia hemisphaerica | exon |
| TCONS_00011147-exon-sc0000121-1510915933:348213..349744 | TCONS_00011147-exon-sc0000121-1510915933:348213..349744 | Clytia hemisphaerica | exon |
| TCONS_00011147-exon-sc0000121-1575043694:348213..349744 | TCONS_00011147-exon-sc0000121-1575043694:348213..349744 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000121 | supercontig | sc0000121:348213..349744 . |
Blast
The following BLAST results are available for this feature:
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