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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011138 ID=TCONS_00011138|Name=TCONS_00011138|organism=Clytia hemisphaerica|type=transcript|length=923bp
TGCCAGAACTACagctaatttgaatttttatttcagGTACATACAACATT
AATTATCGCTTACAAAAAAGACATTTCTTCTTTGCGCTTTTTTGAACAAC
GAACCCTCTCAACCGTTCAACTTCTCTCTCCAAAACATTTCTTGAGAGCa
tcaaatctttcttttcaatgtcaactttattcaattcaattctcAAACGT
TCGTTATCTTTTTCGAAACGTACATATTGATGACTCAATTCTCGTTGAAG
CTCTTTCGATTCGTGTACTTCCAAATTTTTAGCGATCAAAACCTCTTTAG
ATGATTGTTGAAGTTCCTTATTAGCATTCTCCAAAACTGAAACAGTTTCT
TGGTAACTTGATGCAGATTCTTTTAACGAAGACACCTCTTGCGCATGCGC
ATCTGTTAATGTCGtaacactctcttgcaatgttTCCTTCTCTTTCGATA
ATGTTTCATTCAATTTCATCAACTCTTgaagtttctttttcaaagattta
tttttttgatcgACGGTTCTTTTCTCTCCCTTCATTTTCTTTAAATCTTC
CTTCAAGCGTGTATTTTCCTGACCAGATTTCGTTTTCTCGGCTTCCAGCT
TCGTAATAGTCTCACGGTCTGTTTTAGTAGAGTCGCGTAATTCATTGTTT
CTTTTACTCATGGATGCCAAGTCTTTTAAATGCTCTGTATTCTCATTCTT
GAGCATCGAATTTCGATTTTGAATATTATTTAAAGTCAATTTTACATTTC
GTAGATTTTTGCCAGTCACTTTATTCTTCTCGGTCATAAGCTCGAATTTT
TCGGTCATCGATTCCAGTTCACCTTCTAGAATCACCTTAGGGTCTTGTAT
TGGATACACCAGGTCTGTAGAATCTGCATTTGTTGGCGAATCTACTTTTA
CAGCCATTGTTGGCTGATCCATT Run BLAST on NCBI protein sequence of TCONS_00011138-protein >TCONS_00011138-protein ID=TCONS_00011138-protein|Name=TCONS_00011138-protein|organism=Clytia hemisphaerica|type=polypeptide|length=289bp
MDQPTMAVKVDSPTNADSTDLVYPIQDPKVILEGELESMTEKFELMTEKN
KVTGKNLRNVKLTLNNIQNRNSMLKNENTEHLKDLASMSKRNNELRDSTK
TDRETITKLEAEKTKSGQENTRLKEDLKKMKGEKRTVDQKNKSLKKKLQE
LMKLNETLSKEKETLQESVTTLTDAHAQEVSSLKESASSYQETVSVLENA
NKELQQSSKEVLIAKNLEVHESKELQRELSHQYVRFEKDNERLRIELNKV
DIEKKDLMLSRNVLEREVERLRGFVVQKSAKKKCLFCKR Run BLAST on NCBI transcript from alignment at sc0000121:44618..45540 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011138 ID=TCONS_00011138|Name=TCONS_00011138|organism=Clytia hemisphaerica|type=transcript|length=923bp|location=Sequence derived from alignment at sc0000121:44618..45540 (Clytia hemisphaerica)
AATGGATCAGCCAACAATGGCTGTAAAAGTAGATTCGCCAACAAATGCAG
ATTCTACAGACCTGGTGTATCCAATACAAGACCCTAAGGTGATTCTAGAA
GGTGAACTGGAATCGATGACCGAAAAATTCGAGCTTATGACCGAGAAGAA
TAAAGTGACTGGCAAAAATCTACGAAATGTAAAATTGACTTTAAATAATA
TTCAAAATCGAAATTCGATGCTCAAGAATGAGAATACAGAGCATTTAAAA
GACTTGGCATCCATGAGTAAAAGAAACAATGAATTACGCGACTCTACTAA
AACAGACCGTGAGACTATTACGAAGCTGGAAGCCGAGAAAACGAAATCTG
GTCAGGAAAATACACGCTTGAAGGAAGATTTAAAGAAAATGAAGGGAGAG
AAAAGAACCGTcgatcaaaaaaataaatctttgaaaaagaaacttcAAGA
GTTGATGAAATTGAATGAAACATTATCGAAAGAGAAGGAaacattgcaag
agagtgttaCGACATTAACAGATGCGCATGCGCAAGAGGTGTCTTCGTTA
AAAGAATCTGCATCAAGTTACCAAGAAACTGTTTCAGTTTTGGAGAATGC
TAATAAGGAACTTCAACAATCATCTAAAGAGGTTTTGATCGCTAAAAATT
TGGAAGTACACGAATCGAAAGAGCTTCAACGAGAATTGAGTCATCAATAT
GTACGTTTCGAAAAAGATAACGAACGTTTgagaattgaattgaataaagt
tgacattgaaaagaaagatttgatGCTCTCAAGAAATGTTTTGGAGAGAG
AAGTTGAACGGTTGAGAGGGTTCGTTGTTCAAAAAAGCGCAAAGAAGAAA
TGTCTTTTTTGTAAGCGATAATTAATGTTGTATGTACctgaaataaaaat
tcaaattagctGTAGTTCTGGCA Coding sequence (CDS) from alignment at sc0000121:44618..45540 >TCONS_00011138 ID=TCONS_00011138|Name=TCONS_00011138|organism=Clytia hemisphaerica|type=CDS|length=870bp|location=Sequence derived from alignment at sc0000121:44618..45540 (Clytia hemisphaerica)
ATGGATCAGCCAACAATGGCTGTAAAAGTAGATTCGCCAACAAATGCAGA
TTCTACAGACCTGGTGTATCCAATACAAGACCCTAAGGTGATTCTAGAAG
GTGAACTGGAATCGATGACCGAAAAATTCGAGCTTATGACCGAGAAGAAT
AAAGTGACTGGCAAAAATCTACGAAATGTAAAATTGACTTTAAATAATAT
TCAAAATCGAAATTCGATGCTCAAGAATGAGAATACAGAGCATTTAAAAG
ACTTGGCATCCATGAGTAAAAGAAACAATGAATTACGCGACTCTACTAAA
ACAGACCGTGAGACTATTACGAAGCTGGAAGCCGAGAAAACGAAATCTGG
TCAGGAAAATACACGCTTGAAGGAAGATTTAAAGAAAATGAAGGGAGAGA
AAAGAACCGTcgatcaaaaaaataaatctttgaaaaagaaacttcAAGAG
TTGATGAAATTGAATGAAACATTATCGAAAGAGAAGGAaacattgcaaga
gagtgttaCGACATTAACAGATGCGCATGCGCAAGAGGTGTCTTCGTTAA
AAGAATCTGCATCAAGTTACCAAGAAACTGTTTCAGTTTTGGAGAATGCT
AATAAGGAACTTCAACAATCATCTAAAGAGGTTTTGATCGCTAAAAATTT
GGAAGTACACGAATCGAAAGAGCTTCAACGAGAATTGAGTCATCAATATG
TACGTTTCGAAAAAGATAACGAACGTTTgagaattgaattgaataaagtt
gacattgaaaagaaagatttgatGCTCTCAAGAAATGTTTTGGAGAGAGA
AGTTGAACGGTTGAGAGGGTTCGTTGTTCAAAAAAGCGCAAAGAAGAAAT
GTCTTTTTTGTAAGCGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011138-exon-sc0000121-1491911889:44618..45540 | TCONS_00011138-exon-sc0000121-1491911889:44618..45540 | Clytia hemisphaerica | exon |
| TCONS_00011138-exon-sc0000121-1510915933:44618..45540 | TCONS_00011138-exon-sc0000121-1510915933:44618..45540 | Clytia hemisphaerica | exon |
| TCONS_00011138-exon-sc0000121-1575043694:44618..45540 | TCONS_00011138-exon-sc0000121-1575043694:44618..45540 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000121 | supercontig | sc0000121:44618..45540 . |
Blast
The following BLAST results are available for this feature:
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