TCONS_00011041 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011041
Unique NameTCONS_00011041
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1431

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011041 ID=TCONS_00011041|Name=TCONS_00011041|organism=Clytia hemisphaerica|type=transcript|length=1431bp
TTTTGTTCCGATAAAACTGCTTTTTTAAATCAGGAAGAAAAGCCAACCTC
ATCAAAAAAGGTCTAAAActcaaaataaaaaatcaagaaaagaaaTTATA
CAAAATGAACAAAATCAAAAGAGCATTTGGACAACAGGATGATGAAGAGA
GCATTGTCACTGAGATCTCAGATGCCACATCATTGAGTTGGTCAACAAGG
ATCAAATGCTTTGCATTCTGTTTCATTATGGGTGTACTTTGTTCAGTTCT
GGGTGCATTACTACTCTGGAGGAATATCAGGATTTTCGCTGCTTTGTACG
CTGTTGGAGCCATCTTCTCATTGTCAAGCACATTGTTTTTGGTTGGACCA
GCAAAACagatcaaaaatatgttcaaagaaaaaagaattatcGCTACCAT
CATCATGCTGgtaTCATTAGTGCTCACACTTTGTGCAGCATTCTGGTGGA
AGAAGAATTTATTGGCTTTAATCTTCTGTATCATTCAATATTTGGCTATG
ACTTGGTACGCCCTATCATACATTCCCTTTGCAAGGGATGCTGTGAAGAA
ATGTTTTGCTTCATGTATGGGTTGAGATTGTAACTCGACACGCTAAGAAT
TCTTTAATTTGCAAGAAAGTTTAATTTCTGGGCTACTTCGATTCGATAAT
GTATGGATGTATTCATCAAGAAGGAAAGTGGCCATTCATATCCAGCTTCG
TTTGACGTTTAAAGCAAACAGTCATTTCTTACATAGAGTGAAAATTACTG
AACGGCGAGGCATGTAtgatttgttgttctacgggcaggtttttgagaaa
aaatacaAGTTTTCTTCAAATGCACGGGTGGTTAAGTTGAGTAAGGATTT
GAGAAACTGCtgttaactttttaaattttcacgaaattcaTCGTAtaact
ttattttcaacattcaaGATTTACAATTTTACTTCTTGGGAAAGTCAAGA
CTCgcagaacaacaaattaatgaTATTGGTGCTAATTAATTTATTATGAA
GAGTTGTGTGCCATCAAATGTTTACTTTATTCGGTGGTTATTGTGatata
atgttttgttttgtacGACTAGTTTCAGTTTCCTAAATGCTTTGAATTTA
CGCATATCTTCTTTGGCATcagaatttttcagctttttcactttcaaaat
cCAAGCCCTTTATAATTCTGAATAGAAAAATCTATTAAGGGGTAGGTAGC
CTGGGAGATATTTTAGTCTATATAATTTGGTGTTAGCTTTTTTCAGTTcc
tttttgtaaatttataattgttagtttttttatttctttaaaatttcata
aaaatattgtTACTTTTTTATACACTGACAAAAAAAATCCGAATTTCAAA
TGATACTTCTTCCATGGTTGGATCAAATGGTGCTTGGGTTTAAAGTTTTG
TTGCTTCGCTTAAAACATCTCATAATGTTCA
Run BLAST on NCBI

transcript from alignment at sc0000119:342383..357564-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011041 ID=TCONS_00011041|Name=TCONS_00011041|organism=Clytia hemisphaerica|type=transcript|length=15182bp|location=Sequence derived from alignment at sc0000119:342383..357564- (Clytia hemisphaerica)
TTTTGTTCCGATAAAACTGCTTTTTTAAATCAGGAAGAAAAGCCAACCTC
ATCAAAAAAGGTCTAAAAGTAAGTATATAAATTGGATATTTTAAAATGCT
TTCATTTCTCTCCGATGTTTCATTTGTCTGATTTATCTTTAGCATGAATC
TTTGAAATCTTTTTATCAATAATCAAAGTGATTATTATTATTTGGCTGAT
GTTTACGATATTAAAAAATATTAAATACAGCGACCGGTGTTGTTATTATG
GTTATTATTTCTTCTATCTGAAACCTTGCCTTGATTATACTAGTTAGTGT
AGTGTGACTATTAAAGGAGAATGAAAAAGGAGAGCTGCGAGCATAGCTGC
GTAGTTGTATTTTAATGACCAGCCAGGTCTTTTATTTGTGATTTGAGGGC
TATGATGCACAAGCAGTTAGTCACACTAGCGTCCCGTCAAAATGCGTATC
AAAGATTAATGCTGCGAAAGCGTTATATCGTTTACTTGACTCTCAAGCAA
AAAAATGTGGCGCAAAACTTCTGAATGGATTCATGAAAAAATAACCCGGC
GCTTTTTAATGAAATTAACATTTTCAAAAACTTTGACAAATTGCCTAAAA
TTTGAGCCATAGATGAAAAGATTTGAGCCAAGCCAACCTTGAAAACTAAT
TTGAAGATCAACTTCCCAAGAAAAAGATCTACGGGGGAGGCGGAACCCAC
CTAGATCCGCGCACCACCGGATAGGCTGTTTCCCGGAAATTTTGCCGGAC
CTTAATAATGACCCATTTACATATACAGAATTATTTTTACTTTAGCGTAT
AAGCCAGGCCTTAAAAATCGCAGCGCTTTTTTTGTCTGGAAAACGATAAT
TACAAGGTCTCAAAAGAAGGTTGTCTATTGCTCATTCCGACATTTTAAAT
TTTCCGGGGGTTTTGTTGTTTGGAATTGATTAACTAACAGTTAGGTAGGG
TCAGGGTTGCTAGTAACGGCTTGTCACTGTGCCGGGTGCATAATCGGCGC
CTTGGGCCCCGCAGGGTTGCTAGTAACGGCTCGAAGTTCAGTCAGGTTAA
AGGTCGAGGTCGGAATGAGCAATAGACAACCTTCTTTTGAGACCTTGTAA
TTATTGCTTCCCGCGCTGTCTCGGGAATTGAATGACAAATTTTGGTTGGT
TGATTTTGGCTGCTGCACGTTTTATTTTGTTTCAAACTTTCAAGTTTTAA
TTAATTGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCTTGATTCAGGTAACTCTCATCCTTGTTGTGCAAATACATCCTGTAGA
TGACTGATGTTGTTTTTTCTGAAAGCTAGATTTCCTAGTGTGACTAACTG
ACAAGTGTTTCAACTGGTATGTATTCCAACAAAGCCATATTTTGGTTAGT
CTACACAACAGACAGATCCAGGCTTTTAGGCCTTACTCTTGGTCTATAGG
CACTGCTATAGGCGGCCACTAGTGACCCCCACCAGGAATTGCTTATTAAT
AGGTTTAAACNNTTTATCAATAGAGATTTTAAATAAAAGAATGTTTAAAA
CACAGCTGATTGGCTTAGGTTTCGAAACTCTCTATTGTTTCATTAAAACC
TCAGTGCGCATGCGATTTATCTGGAGAATTTCAATATTCAAAACAAGAGA
AGTGCTCATAGCCCGAAGAGTAGGAGTTTTACGCTCGAAATGAAGGAAGA
TATGACGTAGCCTATATTTTGGTTTGTACAGAAATTTCGCCCGCTCAAAT
CTTAACAACAAAATGGTCTATCTTACTAAAGCAAAACATTGCGGCCACGG
TATTTCCCTGTATAAAAATTCTGGTCACGTGACCATCCGTGATGTTAGAC
CAATGAAAACGCTTCATTTGCCCGGATTAAAGTTGTGTCTACACTAACAC
GCGGGAAATGGCTAGAAAAAGAGAGAAAAAACGGGGGGTCAAATTAAATT
TTTCTCCCTTCTTGCGGCAAACATAAAAGACTTTAAGAGGCCATTTATTT
AAGAAAGGGGTGTTATGTCATGAATAAATTATGTAAGAAAGTGATATTTT
AAGTAACAAGTTCATTAGCAATTTTATTTTGAAATTGATGATTTTTGGGG
GGTCTTCAAAAAAATACCGTGTGATAGAGCTCTTCAAACTGAGCAAAAAA
ATGTATTATAAGTCCCAACATCTCTAGGCCAAAATTTATTGGCCTATTTG
TGGTCAAAAACTGATGGAAAACAGGGAATTTCCCCAAAATCTGCATTAAT
TTATGCAAAATTAAACACCTTGCCTTGCAATTTTGCCTGGAAACGCAAAA
AATCGCCAATTACTCGTTACTTGCACGATAATATCGTGGAAACTTTTTGA
TTTTGGAATCTAAATATGCTAATTCGCGAGTTTCCACCAAAAAAAGTTAG
TTCTAAGATGTGTGTCACGAAATGAAACATTTATCAACCTCAGCAGCGGG
ACTATTCCCCTTTAACTGATAGACTTATAGATAACCTGATATAACAGCTG
TTGATAATTTTCTTACGCGCACAATAAACCATCAACTGCTCTAACTTGGG
ACTATTTGACAAAACATGGGACGGCCATTCAGCGACTATTTCACCGAACC
TCCAAAGTCATTTAATTAACATACTGGGCCATTCCAAAATTTGTATGTAA
CAGGGGGCGGACAACACAGGATTGCCAAGGGCAAAAGTTTTCACAAAATT
AAAAATTTCCAAGGCGAGAGAAGAAAATGTATGAATTTCCACGGCAATTG
AATTAATAAAAGGCAAAAAAGAGTTGAATTTCTGCCTCATTTTGCAAAAG
TACATGCATTTTCATCAGAATATCCGACCACCACTGTAAAAAATTATTTC
TGAGGCTAGAAAAAACTAAAAAATGCACGTCGCCCAATGGGGGGTGGGTA
ACAAAAATTTTCTGGAATGGCGCACTGCGAATCATAGATATCAAATAATG
TTAATTAGGCTACCCTCACCAGATGCTAATCAAAAATTAACCCCTGTTTT
GTGACATTTTTGATGCCATCCACTATTTTGCTCATAGAATGAGGCCATCA
TGTGGCTTACATGTCAAAATACATCCATGGTTAAGCTGAGTAATTTATCT
ACCTGTTGCAACAAGAACGAAATTTTGTGGCTTACTCAACTTAAATATAT
TAAAGCATGAAGTGTGAGTAAAATATGTGGCTGACAAAAAAGCCACGAAA
AAGTACATTTAACAACGCAAAAGTATGTACATTTAACACTCTGTGGAAAA
TTCAGCCTTTCTTCTTTCAAGTCTAGAAGGTCCTATTCAGAGATCACTTT
TCAATATTGTGTGGCTTACACTTTTAAAAAAGTAGAATTTTTGAACTGCA
GCCACAATTTTGACTCAAATAACAAAAAAAAATTTTTAATCATATTTCCA
CGTTGAGGTCTTTTACCCGGTGAAATCTCTATGGCTGACTCAAAAAATAT
GAAGAGTTATTCCAAAAAGTTGATTTTGAGCATTTTTTACAATGTCACAC
TATTTTTGATTAGCATCACCAGGTAGGCTTTCACATCGCAAAAGGAACAA
GTCTTTGCGACGAGAAACGTGTTAACGCAATCACGCACATTCGCACAAGC
CTCCAAACACAGATATTTTCTTCTGCAGAAAATTGTGAGATTTATTATCG
ACACAAGGTAGCTTTGACATGTCAATCTATCGTGCACGCTAGAAAAAATA
CACAAAAAAATGGCGTCTAGATGTGAGCAGTGTGGTTGTTAATTACCTCT
TCAAATTATCTACTTTTAAAATGCTTTGAAAATATACATTTGGTTGTTAT
TATGAGATGGTGAAAGTTTGATTGATAAACTTGGTTCAAGTATCAAAACA
GACTTGTTGTCAAGGAGATTTAAAAAGTAAGTGAAAATACAGCCTAGAAA
TCAACCGTCCCAAGATTTGACCAATCCTCCCAAGTTAGAGCAGTTGACGG
AACCTCTGATGGCGCTTGAAAATTAAGCATTCCTCCTGCAGAAAATTTTA
CAACATTCACATACTGAATTTGAAAGATGTTCTATGTAGCGTTTTTTTTG
CAAAAAACTGATTTTTGTCCCGCTTTTGCCAGGCTTTAGCTTAAAGTGCT
TGCATGCAACATAAGGTCCAAATATGCGTTTCTCGTAATTTTTGTATGAA
GAGTTAGGTCTAAACTGCGGCTAGTTCGAAACACGGGTCACGGGTCACGG
GTTACGGGTCACGGGGTACGGGTCACGGGTCACGGGGCACGGGGCATACA
ATTTACAGACCGGAAAAAATATAACGATATAGACGTATAATTCATGCATA
ACACGTACTACATAACACATATAATAGTACTAATACTACTAGTATAGTAT
GTCTGAAACAATTATATACGAATAGTATTATCATGAAAATCTTTCAATAA
TATGTCACCCACAAATTTTGACAAAATGATATTGAATGACAAAAATATTG
TCAAAATCATGAAATATAAGGCCTCTGAACCATTTTACAGCAAAATGTTT
TTTCATAGTCAATAGGATGCTAATCATGTGACTGGATATAGATTGACATG
TTTTAAAATGATTAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGTCTGCATTATACACGACG
CAAACTTCGAAAGCACGTGGAAAGCACGTGGTTAGGTTTTAGCGTTTTAA
ATAGTCATACGTGGATAAAATACCTTAAAATAGATTTTTTCGATAATTTT
TAGTGTTTTTTTAAAACATTTTCTGTTTGAATTACGTTGATCTGAGCTGC
CCCGTCACCCCGTGCCCCGTAACCCGTGCCCCGTAACCCGTGCCCCGTGA
CCCGGACCCGTGACCCGTGACCCGTGTTTCGAACTAGCCGTCTAAACTGT
ATTCGTCAGATTGTTAGGTTTTCACACATCCCTTTAGAGCTTCAGCGTGG
TGTGCAGAAAACAATCACAATCTGATCTCAGGTTATTGATAGGACACTGC
AGTTTATTGTAGAAGTACCGTGAAATCGGGTAACTTGCATCAGTGGAGGA
GGGAAACTTTCATAGCCATCAAATCCTGACCAATCAAAGCAGTAAAATTT
CAAAACAAATGCAGCTAAGCTTGCAGCTCTATTTTACCATTTTAGAATTT
CATTGCCGTGCGAGTATTATTGGCGAGTTACTTGCCAATAGAATTGCGGG
TAAAAAAACTGTGTGGTTGGATGATGAAAAATCATCGCCCTGTCCTGTTT
GAGATCATTATTTTTTGAAAATAAGTCATTTTATCAACATAAAGACAATA
GAATAATTGATGAGAATTGTTTCTCTACAACTACCCTGCCTAGCATTTGC
CCCCTGACAATTTTTATCTATTTATATTAAAAAGCAATCTCATTTGGTAC
TATTGAAATATTTGGTGTAATAAAGCTTAAAGCTTATCACACTTAAGTGC
CCTGTCGTTCTTTCTTTGTCAAAAAGTGTAATTTCGTCAAGAACTCCACA
TATCACTTTTTTGATCTCGCGAAGCCACCATTTTCAACTTGTTACCCCCT
GTTACCCTGTGTTACCCCTGTTACCCTTTATAGTATAGTAACAATGATTT
TAGCACATTTTCATAAACATTCTTCATTTTCTTAATTTTGCATTCATCAG
TGTAAGAATTTCTAAGGCTGTTTGTGTCGTCCGACTGACTGACAATTTAT
CTTCACTTTCGATTCTTTTGAGTTGGAAGGTCCCAAAATTGTTGGATTTT
CACCCAATTTCATCCTTCACTTCATCTGCCATCTTTAGTGTTATTATCTC
CTCTCCTGTATTGTGAAATCCAATGACCGCGATGACGAGCTGTCTACATA
AACACAGCAAAAAAGCAGGCCGTTTATTTTCAATTTCCAATAGATTTGAT
TTCTACCCAAGTCATATTTTTGAAAATTCATTTTTCAAACTTTTTTTTGC
CAACCGTCCAAACAACTCATTTTCAGATCATTTAAATGTGTCAATTATAA
GTGGCTTTTTTATTTACTTGACCTGTAAGTGTGAAGTATACAGTATTGTC
TGACTGAAGTGAAATGACTCGACACAAAACTTTTACCTGTTTTTATCCGT
AACTATTTTTTTCACTGCCTACTCTTTTTTTTAAGTCAATTTAAATATTA
TATTGTCAAGCTTTGGCTTAATATGGACCATTTGTTTCTAATTTTTCGTT
TCTCAACACTTATGTCAAAGCATACTAAACTGATGGTATGTATTGTGTAA
TTTCATATTTTGTCAAATAGAACAATCAACTGAAGAAACACGCAATGATC
AGGGGCGGATACAGGGTATGTGAACATGGTGAATTCACACACTCAATTTT
CTTGAGATTTGGAAAAATATATTTTCTATAAATTTTTTCTTGTAGAAGAA
ATATTTTGTTCTTTCAAAGAAACATAAATGCTTTTTGTACACAAAATGTT
CAAAAGGTACATCTGTTGATACGTTTCACTTTCTGTGTTCAAAATGACGT
CAAAGAAGCTTTTGTTTGTGTGAGGGAGACTCTCCATCGTAATAAGTTCT
CTAAAGACATTGCATTCATCTTACTATCATACCTCAACGGTGGAGATTGT
TTTGGCAGAATTTCGTGAGGAAAATTACATACTATAAATAAAATAGCATA
CTTTTCACGAATTTTCATTCCTTCAGACTATCGCAATATTCGTGTAAACA
AATCACCAAACTATGATTCTGTGCTCTTATAAGTAGAGTGAATCAAAGAT
ATTATATACATGTGTGTGGCATGTAGCGATGGGGTAGAGTATTCCTTCAA
TTATCGGATTCACAAATCGGGATTATATTGGAAAATCGGGGTAAACCGGA
ATTTTCACACAGTGATAAAAATTCCTGTATCCGCCCCTGATGATTTGTTT
AAAAAACAACAATGTTTTTTGCAAGCTCAGCTTTCTTTTCATAAAGATTC
AGACCTCACTTTTTTGCACTGTCAATCTGCGAAAGCAGCCAACGAGGCGA
CCTTTTTTTCAGATGTGTTCTGAGAGCGTATTTCAGCTAGAAACTTTTAT
CTGTTCTGATAAGTTCTCGAAAATTAACTAGCTAGAAATAATGATGTGTT
CTGATGAGACAGGGGTAAAATCAAGGTCATCCAATGTGTTCTTGTTGTCT
AGGTAACCCAGAACACGTATTTTAAAGAGCCAGGGGTATATAATCAAGAG
AAAATAGATGTAATATTGTTGCCTAGTAACCCTAGAAATTTTCAGAACAC
ATCTTTTGTGGAGAAAACAAATATCTTACAAGTATATCTTGGTAAAATGT
TTTCCTAGATTTTAGAACACATCGGGCCATAAAGTAATAATAAGTTTAGG
GAGACAAATATTGTGATAAAGGTTTCCTAGAAATCAGAACACATCATTTG
TATAAAAAATTGAAGGTTGTAACATGTGGTCGTCTCCTAGAAAATAAGAA
CACATATTTCCAAAAATTATCTCCGCCGGCTGCTTCTGAATCTGGCTTTC
AATATAAAAATACAGTCAACTAACTTATAGTCAACTAATTAAAAATTTTG
TTTTGGGAAAAAGAAAAAAAAATGGGGCTATTAAAGTTTGTTCTTTAGAA
AAATGTTAAGAACTGTTTGACTTTTACTTGTTTGATTCATCATCATTTAA
CTAAATGGATTTTTTTCAATAGCCTAACAATGCCTAGAGGGGTAAAAAAA
GAAAATTTACCTTCAAAAGTTTGTGTGACTTGCGAAAGACCTTTCACTTG
GCGTAAAAAGTGGGAAAAATGTTGGGATGAGGTGACAACATGTAGTAAGA
CTTGTAATGCAAAAAGAAAAGAAAAAAATACAGCAAAGCAAAGGAATGAA
CGGTGTAATAAAGAGGATAAGATCAATGAACAGAATCAAAGTCAACTCAG
CGACATCAATGAACAATTAAAAAAGGGAGACAATTATGCTGATTCAGCGT
CGGCTACAAACAATGATGTTGTTGATGAACTTACTGATAGTCTAAGTATG
GTAGAATTGCTTCAGAAAAGCGATAAAGAAACTCCTGAAGAAGAAAACTC
AAATCATATTGAAGATCAAGTTGCTCAGAAAAAAGCTCTTCGTAAAGCTG
AAAAGAAACGTAAGAAAGAAGAACGCAGAGCTCAACTTGATGAAAGAGGA
GAAAAAACTGGTCAAAAACAATGTGATGTGTGTAAAAAAAATGTTGATTT
GTTGATAAGGTGTAAAATTGATGAAAGTCAACAATGGAATATGGTTTGTG
GAAAATGTTGGAATGATGTCAGTGGAGGTGTTGTGGATGGTGATGCTTCA
CATCCTCATTACAATTATGGAGGCCTCTGGAAAAATAGGAGATAGCTCAT
ATTGCTTTTTGAAAAAAATTAGTTGAGTTGTATTTAATATCTTTACCCTT
AAAATCTGTGACATAATGGTGATAGCAATGTATGTTCTAGACTTTAGCAC
CTCCCTCATATAAGTTCGATACCCTCAGAATTCCTGGTTTATTCTTTCCT
CAAAATGATATTTTCTTTCATTTATAATTTTTCTTTTATCAGTGTAAATT
AAAGGGGAAAACTGCATATTGAAAAAAAATGTTTACATACAGAAGCAGTA
CATGTGGCAATCTATATATTAATAGCGATGCTTTGTGTGTCTGTGTGTCA
CCACTTTCTTTTTCGCTTTGTTTGTGTTTTAAAATTATGACTTTTAGTCT
CTTGCTCCACAAATTTGTTCTATTGGATTCGCGCCATTTGCTTTGTTTTC
GATTAAGTTTGTTTTGATTGACAGATCGAATAGAGCTTTAGACTTTATTC
AGCGTTTGTTTTGAAATTTAAGGCCCATCTACATTTAGTAATTTTAATTT
CTGCCCAGCTTTGCCCGATCCTGTTTTTCTCTCTTTTGTTTGAAATGTTT
TCGAATGTATTTAACGATCGTATTTATTAATGACATTCGAATTCTTTTCA
AAACAAAACAAGTTTTTTTTATAGAAAAGAACATTTCAAATGTAAATCAA
AACATAAAAATCGAAAAGTTTGTCGAACAATAACATCATTCAAAGGGCGA
AATAAGGCATAAGAAAAAATGTGTTCACCTCTTTCTAAATATAAAAACAT
TCAAGTGGTTGATACTGTTAAAAACCGTGTACGTCATTCTACATGTTTAA
AGTCGAAAAGTTATGACAAGGGTTTAAAAAAAGCAATTTAGAATTGACTT
ATTTATCTTTTTAAATCTAATAAAAACAAAGTTGCACTATTCTTTGTGGC
TTTCCCTCTTTTTCCTAAAGAATTGTCATTTCTACATTTCACTCCTCTTT
ACCATGACATTTTCTCAAATTGTTGAAAACTGGACGGCGTATTTAATGCG
AGCGAAGCAAGAAAAAGATCTCTGGGGGAGGGTTAGAGTCAAACTTTGAA
GATTATCTTTTTGTTCATTTGATCGTTTTCGCCAGCTCCAACATCCAAAG
GACTTTTAGTGCGTTCAGCTACTGCTTAACCAGCGTGCGACGCCGGGTAC
CGGCTAGTATTATATATTTAATCGTCAGCCGTGCAAAATTACTCGAATCT
GATTGGTTTAGAGGAGTGCAATTAATCGTTAATTGCACTATTACCACTTT
TTGCACTCTTCGGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCTTCGGCGGGGGGACACTT
TTGTCCCCTTATTCTTTTCTCTCCCAAGTCCTGTGTCAGAGACTTTTTTT
TACTATGTAATAAAAAACAAAGACANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCCCCCCCCCCCCGTTTATTTGGCACCTAAGAG
TAAATGATAATAGCATCAATGATAATCTAACATATTATTAATAATGTATT
GTTAGTTATCCTTATAAATATATACTGTTATATTTATAAATATATTTGTA
AATAACAAAACTAAATTAAACAAATTAAAATAACTATTGGGATTTAATTC
CACACTATGATGGCCTTATTGTGTTAGTTTACAATCTCACCAATGGTTTG
AGTTTTGAATTTCATCAGCATTTTGGTCTTGAAGGTCTTTTTTTTTCTCT
TTTTTTTCTCTTTTTTTTCTCTTTTTTACCCTCTTTTGGACTTGTAGAAT
TGCTAATATTAATTATTATTGTTTTGGTGTATAGCTCAAAATAAAAAATC
AAGAAAAGAAATTATACAAAATGAACAAAATCAAAAGAGCATTTGGACAA
CAGGATGATGAAGAGAGCATTGTCACTGAGGTGAGCCTACATCAAATTTT
TTCTTTACAGATAAAACCAGCAAAACCTAACATTTAATATTTTTCATGTT
TATATTTATTACTATTTTGACTGTATCAACTCTTCAAAAATAGGCCCCCT
TCCCGAAATAAAAATCAAGGAATATTTTATTCCCCATCATGATTTGCCAA
TCACTTCCTTGATTTCCCTAGAAACATTTAAACCTTCAAAAGATTTTCTT
TGCTCATCGATAATGATGCCAATCTCTCAAAATTGCATGATGAAATATTT
CTAGAAAGATATTTAATTGCATGAAAAAGTTAATTAAAATTCTATCACGT
TGAAGTGATGAACCACTTTTTTCTAATTAGAACTCTTCGCTCATCCAGAT
CTCAGATGCCACATCATTGAGTTGGTCAACAAGGATCAAATGCTTTGCAT
TCTGTTTCATTATGGGTGTACTTTGTTCAGTTCTGGTGAGTCTATACAAA
GATTTCTATAGTTATCCAACCTTATGTCCTGTGTTTAATTGTATAAAAAT
CTATAATATGTATGTAATAAACGGGCTAAAACATTGAGAAATCAGGCTCT
GGAAGTTTCTGTTGAAATTAGAATGCTCTTTTGGAAAAGCACAGATAAGC
TGTATCTTCGATCAATATTGTTTCCTTAACGGCTCAATCAACTTTTGTTT
ATTCAGGGTGCATTACTACTCTGGAGGAATATCAGGATTTTCGCTGCTTT
GTACGCTGTTGGAGCCATCTTCTCATTGTCAAGGTAACAATTTCATTCCC
TTTATTATCTTAATTATGTTTATATTGGTGATTTTCCTATAAAATGTTTG
AAAAAGAAATGCTTATAGGTAATTTCAATGGTCAATAAGCAAAGAACTTT
TAAAAGAGAAATATAATGATTTGCTGCAAGATATTTTTTCATTCCTTTTT
TTCTCTTATAACTTTGGGAAGGCCCTCCTAACTCTCCAGTTCATACCTAT
TTATATTACCTATGAAAAACTAAAAAATAATCCTTAGTTTTATGCTTTAA
ACTATTTCTTTTTTTGTCCGTTTGGTTCGTTAGACTTTAGAACGCCATGG
AATTAACTTAATAGCTTTTCTAACTAAGCTAGACAAATTTATTTTTCATA
CTAGCACATTGTTTTTGGTTGGACCAGCAAAACAGATCAAAAATATGTTC
AAAGAAAAAAGAATTATCGCTACCATCATCATGCTGGTATGTGTTCTATT
TTTTGATGTTGTGATAAAGATGAGAGCTTAAATACAAGTCCTTGATAAGT
ACACAAGGTCTCATTTCAGAGAATCTTTGAGCTTGATTGATACAAAGCAC
GTCATTTAATCAATTCACGGGTTGCAGAACGAAGTCTTAAGTCACTCAAT
AAATTTCGTCGTTGTCAAAGTAGAACGATTTTGAAATTTGCCCATCCGCT
TTGACAACGAGGTTATGTGCTTGCTACATAACCTACATTATTTTTATTGG
TAAAATAATAACTAAGTTGTAAAGCAAGTAACATGGGAATTAAATCACGT
GAACTTTTTCCGAGTAATCACATCCAGCGAATTTGTGATTCCATGATTTC
TTTGGGTTTCTCATAGATCTGTGATTGAGACTTGTCACTCACTTTTTGTA
TTCTAATCTTTTTTGTTTTTAGGTATCATTAGTGCTCACACTTTGTGCAG
CATTCTGGGTAAGTCTTAGATTATTTTTGTAGCAATCCTTTTGGTGGCTA
TTCTGGGCTATTTGGTTTATCACTTTAATGCCCTTTTAACTATATACGCT
ATTAGAAGACTATAAATTTGAATTTCGATATGTATTCTTCCATCACATTT
AAACCCAACAGCTGATTGGTTGCAAGTGACGTATCGAATGATATTACGTC
ACTTACAACCAATCAGCTATTGAGTGTATGATGTAATGTCAGAAGTCATT
GCAATGCTGTATGTTATGAATAGGCCATTTCACAGTCGCAAAGCGTAATG
GGTAATCAGGACCACTGCGCGCTAATAACGACTTACTATTGGTCCAAAGT
TTTGAAAAAAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTGAAGATTT
TTGCGTCTAGCCAACGGGAAGCCGTAATGGAGGCGCAATCAGTCCTGATT
ACCCATGATCCATTTCGACCGTGAAATGGCCTATACAATAAGTCAAGTAT
TTTATTTTGTTTGAAATTTTTACTTTATTTTGAATTCTATTTTTCAGTGG
AAGAAGAATTTATTGGCTTTAATCTTCTGTATCATTCAATATTTGGCTAT
GACTTGGTAATATGTCTTTCTTTCTGTCTTTCATCTGGTTTATGTTCACT
TAACAGAAATGAATTACTCAAAATTGTTAACCGGTTACTTTTTCGTAGCG
GGCTACACGGCTTTTTGGTGTACAGAATAATTGATGTACACTTTATATGC
TCTTATTTATGCAAGTTCTTTTAGATTTTATAGAATTTTTACTAAAGTTC
TACACTTTATCTTTATTCTGTTTTGTTTTCTTAGGTACGCCCTATCATAC
ATTCCCTTTGCAAGGTAAGAGCTCTATTGCCCATACACTCTTGAAAGTAC
AAAGCTTAGTTTTAAGCCAACGGGGGTAAATTGGGGTGGTTTGGTGTCAG
AAAGTATCAAACTTGAAGGTCGAATCGTGATATATAATAAAGGCATGGGG
CGTCCCCAAAGGTTTAATTGAGCGATAGAAAAGTGGTTTAAGGCGGCAGT
GCCAAAAGCCAGGGGTCCCGGATCGAATCCCCGCTCCTTCCAATGTTCAG
TTAATAAATAGCCGAGCTGGTTATCAATGTAAAGCATATCATTACAACTC
CCCATTTAATGAAATTATCCCAAATTGTTTTGAAATAGGCAGCCCCTTTC
AATTAAAAAGGGGAGAGTAAACGAGTTATGCGATAATTTTCTATAATCCC
ATGATATTGAAACTCTTTTCCATTCTTCACGTTCAGGGATGCTGTGAAGA
AATGTTTTGCTTCATGTATGGGTTGAGATTGTAACTCGACACGCTAAGAA
TTCTTTAATTTGCAAGAAAGTTTAATTTCTGGGCTACTTCGATTCGATAA
TGTATGGATGTATTCATCAAGAAGGAAAGTGGCCATTCATATCCAGCTTC
GTTTGACGTTTAAAGCAAACAGTCATTTCTTACATAGAGTGAAAATTACT
GAACGGCGAGGCATGTATGATTTGTTGTTCTACGGGCAGGTTTTTGAGAA
AAAATACAAGTTTTCTTCAAATGCACGGGTGGTTAAGTTGAGTAAGGATT
TGAGAAACTGCTGTTAACTTTTTAAATTTTCACGAAATTCATCGTATAAC
TTTATTTTCAACATTCAAGATTTACAATTTTACTTCTTGGGAAAGTCAAG
ACTCGCAGAACAACAAATTAATGATATTGGTGCTAATTAATTTATTATGA
AGAGTTGTGTGCCATCAAATGTTTACTTTATTCGGTGGTTATTGTGATAT
AATGTTTTGTTTTGTACGACTAGTTTCAGTTTCCTAAATGCTTTGAATTT
ACGCATATCTTCTTTGGCATCAGAATTTTTCAGCTTTTTCACTTTCAAAA
TCCAAGCCCTTTATAATTCTGAATAGAAAAATCTATTAAGGGGTAGGTAG
CCTGGGAGATATTTTAGTCTATATAATTTGGTGTTAGCTTTTTTCAGTTC
CTTTTTGTAAATTTATAATTGTTAGTTTTTTTATTTCTTTAAAATTTCAT
AAAAATATTGTTACTTTTTTATACACTGACAAAAAAAATCCGAATTTCAA
ATGATACTTCTTCCATGGTTGGATCAAATGGTGCTTGGGTTTAAAGTTTT
GTTGCTTCGCTTAAAACATCTCATAATGTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006187XLOC_006187Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011041-exon-sc0000119-1575043694:357497..357564TCONS_00011041-exon-sc0000119-1575043694:357497..357564Clytia hemisphaericaexon
TCONS_00011041-exon-sc0000119-1575043694:346335..346430TCONS_00011041-exon-sc0000119-1575043694:346335..346430Clytia hemisphaericaexon
TCONS_00011041-exon-sc0000119-1575043694:345880..345966TCONS_00011041-exon-sc0000119-1575043694:345880..345966Clytia hemisphaericaexon
TCONS_00011041-exon-sc0000119-1575043694:345582..345658TCONS_00011041-exon-sc0000119-1575043694:345582..345658Clytia hemisphaericaexon
TCONS_00011041-exon-sc0000119-1575043694:345129..345210TCONS_00011041-exon-sc0000119-1575043694:345129..345210Clytia hemisphaericaexon
TCONS_00011041-exon-sc0000119-1575043694:344657..344692TCONS_00011041-exon-sc0000119-1575043694:344657..344692Clytia hemisphaericaexon
TCONS_00011041-exon-sc0000119-1575043694:343959..344017TCONS_00011041-exon-sc0000119-1575043694:343959..344017Clytia hemisphaericaexon
TCONS_00011041-exon-sc0000119-1575043694:343701..343730TCONS_00011041-exon-sc0000119-1575043694:343701..343730Clytia hemisphaericaexon
TCONS_00011041-exon-sc0000119-1575043694:342383..343278TCONS_00011041-exon-sc0000119-1575043694:342383..343278Clytia hemisphaericaexon
TCONS_00011041-exon-sc0000119-1510915933:357497..357564TCONS_00011041-exon-sc0000119-1510915933:357497..357564Clytia hemisphaericaexon
TCONS_00011041-exon-sc0000119-1510915933:346335..346430TCONS_00011041-exon-sc0000119-1510915933:346335..346430Clytia hemisphaericaexon
TCONS_00011041-exon-sc0000119-1510915933:345880..345966TCONS_00011041-exon-sc0000119-1510915933:345880..345966Clytia hemisphaericaexon
TCONS_00011041-exon-sc0000119-1510915933:345582..345658TCONS_00011041-exon-sc0000119-1510915933:345582..345658Clytia hemisphaericaexon
TCONS_00011041-exon-sc0000119-1510915933:345129..345210TCONS_00011041-exon-sc0000119-1510915933:345129..345210Clytia hemisphaericaexon
TCONS_00011041-exon-sc0000119-1510915933:344657..344692TCONS_00011041-exon-sc0000119-1510915933:344657..344692Clytia hemisphaericaexon
TCONS_00011041-exon-sc0000119-1510915933:343959..344017TCONS_00011041-exon-sc0000119-1510915933:343959..344017Clytia hemisphaericaexon
TCONS_00011041-exon-sc0000119-1510915933:343701..343730TCONS_00011041-exon-sc0000119-1510915933:343701..343730Clytia hemisphaericaexon
TCONS_00011041-exon-sc0000119-1510915933:342383..343278TCONS_00011041-exon-sc0000119-1510915933:342383..343278Clytia hemisphaericaexon
TCONS_00011041-exon-sc0000119-1491911889:357497..357564TCONS_00011041-exon-sc0000119-1491911889:357497..357564Clytia hemisphaericaexon
TCONS_00011041-exon-sc0000119-1491911889:346335..346430TCONS_00011041-exon-sc0000119-1491911889:346335..346430Clytia hemisphaericaexon
TCONS_00011041-exon-sc0000119-1491911889:345880..345966TCONS_00011041-exon-sc0000119-1491911889:345880..345966Clytia hemisphaericaexon
TCONS_00011041-exon-sc0000119-1491911889:345582..345658TCONS_00011041-exon-sc0000119-1491911889:345582..345658Clytia hemisphaericaexon
TCONS_00011041-exon-sc0000119-1491911889:345129..345210TCONS_00011041-exon-sc0000119-1491911889:345129..345210Clytia hemisphaericaexon
TCONS_00011041-exon-sc0000119-1491911889:344657..344692TCONS_00011041-exon-sc0000119-1491911889:344657..344692Clytia hemisphaericaexon
TCONS_00011041-exon-sc0000119-1491911889:343959..344017TCONS_00011041-exon-sc0000119-1491911889:343959..344017Clytia hemisphaericaexon
TCONS_00011041-exon-sc0000119-1491911889:343701..343730TCONS_00011041-exon-sc0000119-1491911889:343701..343730Clytia hemisphaericaexon
TCONS_00011041-exon-sc0000119-1491911889:342383..343278TCONS_00011041-exon-sc0000119-1491911889:342383..343278Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000119supercontigsc0000119:342383..357564 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
36.4061	36.8519	36.6941	34.753	20.5064	16.4786	23.5066	24.2894	27.5248	27.6704	31.1729	19.6187	16.8233	15.7139	16.9705	19.0131	20.3291	21.2473	16.4781	19.9493	19.2083	19.9629	23.7202	17.5536	6.19172	7.3574	19.235	19.4471	30.7915	26.6148
Blast
[Close]
BLAST of TCONS_00011041 vs. Swiss-Prot (Human)
Match: SFT2B (Vesicle transport protein SFT2B OS=Homo sapiens GN=SFT2D2 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 3.043e-56
Identity = 90/159 (56.60%), Postives = 121/159 (76.10%), Query Frame = 3 
Query:  105 MNKIKRAFGQQDDEE-SIVTEISDATSLSWSTRIKCFAFCFIMGVLCSVLGALLLW---RNIRIFAALYAVGAIFSLSSTLFLVGPAKQIKNMFKEKRIIATIIMLVSLVLTLCAAFWWKKNLLALIFCIIQYLAMTWYALSYIPFARDAVKKCFASCM 569
            M+K+K+    QD E+ S ++E+ +A+SLSWSTRIK F  CF +G+LCS+LG +LLW   + + +FA  Y  G I S+ ST+FL+GP KQ+K MF+  R+IATI++L+   LTLC+AFWW    LALIFCI+Q LA+TWY+LS+IPFARDAVKKCFA C+
Sbjct:    1 MDKLKKVLSGQDTEDRSGLSEVVEASSLSWSTRIKGFIACFAIGILCSLLGTVLLWVPRKGLHLFAVFYTFGNIASIGSTIFLMGPVKQLKRMFEPTRLIATIMVLLCFALTLCSAFWWHNKGLALIFCILQSLALTWYSLSFIPFARDAVKKCFAVCL 159
The following BLAST results are available for this feature:
BLAST of TCONS_00011041 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SFT2B3.043e-5656.60Vesicle transport protein SFT2B OS=Homo sapiens GN... [more]
back to top