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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010863 ID=TCONS_00010863|Name=TCONS_00010863|organism=Clytia hemisphaerica|type=transcript|length=499bp
GTTGCAAATCCAAACACAGAAACGATTGGCACTTCGGGGCCGAGATTGGG
ACGGAACGCGGGAGCAGGGCCAGGAATAAAAGGAACACAGAAGATGTCAA
CTCCTTGCAACTTCTATAAAAACACTGGAAATCTTGaagttcatcaaaat
actgAGAATGTTTTAAATAGGGAATTGATTCTGAATGTGGAGCAAACAAT
TACTTTCCAATCAACTGATGATATTTTGCAAATGTTGAAAACGCATCctg
attttgaaagaattccACCAGACTCTTTGCAACCTATCATTGCAGGCTTA
CTTTCAGGTCTAATGGCTGCAGTAGGAACAATAGTTTTGGCAATCTCACC
CATTGGAACGGCTCTTGTCATCAAAATCTTGGCTGGTGCTGTGCTCTCTG
GTGGTGTTGCAGGAGCGGAAAACGCATTGAAGTACGGAATTCGTGGAACT
TTTACATGGACCAAATGGACCGTAGATGTTGCGCTTTCGTCTTCAACTG Run BLAST on NCBI protein sequence of TCONS_00010863-protein >TCONS_00010863-protein ID=TCONS_00010863-protein|Name=TCONS_00010863-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
VANPNTETIGTSGPRLGRNAGAGPGIKGTQKMSTPCNFYKNTGNLEVHQN
TENVLNRELILNVEQTITFQSTDDILQMLKTHPDFERIPPDSLQPIIAGL
LSGLMAAVGTIVLAISPIGTALVIKILAGAVLSGGVAGAENALKYGIRGT
FTWTKWTVDVALSSST Run BLAST on NCBI transcript from alignment at sc0000118:50245..52891+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010863 ID=TCONS_00010863|Name=TCONS_00010863|organism=Clytia hemisphaerica|type=transcript|length=2647bp|location=Sequence derived from alignment at sc0000118:50245..52891+ (Clytia hemisphaerica)
GTTGCAAATCCAAACACAGAAACGATTGGCACTTCGGGGCCGAGATTGGG
ACGGAACGCGGGAGCAGGGCCAGGAATAAAAGGAACACAGAAGATGTCAA
CTCCTTGCAACTTCTATAAAAACACTGGAAATCTTGaagttcatcaaaat
actgAGAATGTTTTAAATAGGGAATTGATTCTGAATGTGGAGCAAACAAT
TACTTTCCAATCAACTGATGATATTTTGCAAATGTTGAAAACGCATCctg
attttgaaagaattccACCAGACTCTTTGCAACCTATCATTGCAGGCTTA
CTTTCAGGTGAGAGACACAGTTATCTTTCGcgatttcgcgaaatttagac
CTCCTTCGCGTTTTTGGGTGTCtatcgcgaaaattagttccgcaaaTAGT
ATTTTTACTTACATTCTGTAAAAacctctaggaaaatgaaaaaatttcgg
CAAAAGATTGGGtgtcaaccgcgaaaattagttcagcaaaaattagtcac
cgcgaaaattagttcccttaaggaaATCGGTTTAATTTTCATCACTTGTA
CAGCCCGGTCCAGAGGTGGTCAATCGCCAAGTCATGGTGAAAAAAAAGGG
AAGCAAAGGTCAACCCTTTTTCAAGGCTTTAATTTGAGTTTAGAACAAAC
AATCTTTCATGTTTTGTAGTTTAATATATCACAtttattaataaaaaaaa
accattttcacatAGGTCTAATGGCTGCAGTAGGAACAATAGTTTTGGCA
ATCTCACCCATTGGAACGGCTCTTGTCATCAAAATCTTGGCTGGTGCTGT
GCTCTCTGGTGGTGTTGCAGGTTAAagatcaaatttcataaaagttgGCT
TGCTCGAAATAaatagcctatttcataggatttgtGCATTTGTTACATGA
TTTTTTCTATTCAATACacttttctcgagatgcataaatttattgttgtc
ctcgttttcaaacaaatttcatTGCTCTGAAATTATACagttaaaccaat
ttaaattcccaaaaggcaaacattaactctgaaacaaaagtacttgaaat
tcaaaatgtctcatgaggtataaacaacacaattatcattgtgaatatgt
aattttatagcaatgaaatctgtttgaaaacgaggacaacaataaattta
tgtatCTCGAGAAAAGTGTATTCAAAAGGGAAAAATGCACAATCTGCAGA
TTTCAAGACCCTCAAGAAAGACgttgaaaaatttaagaaattcgCAAAAG
AGTTCTCAATTCGCAGAGAAGTTCTCAACATTAAAaagttgattactgca
gtgacgtagaaaaatATCATGTACTAAAAACACGAATTCTATGAAATAGG
TTAAAAGATTTCAGACCACATTAGGGTCCTTTGCAAAATTTCGTGCCGTT
TTCAATAAGGATTTTGTTTGAAGGAAAATAGGTAGCTCCCAAATAATTAC
GTggttgatcagagtttttttaGGATTCAAGGAAAGCTTCGGCATCTTAA
TGATCGGAAAGTATTTAAGTacataaggcgagaccaatttaatttgttgt
tctacgggcgcgACCGACCCAGTATTTGctgcaaacgaaaaaataataat
attgagtTTCCTGTGCCACAAATTTCCAATAATAAGAAgtcattgaaaaa
atttacactaaaaaaaagttcaaaaaaaatCTAGAATCATGAAATCTATG
Cacgaaagattttattacaaactccatcaaagatgaatgatgaattttcg
atcaagattatttgaaaatattacttaaaACCTGATTACCttccttgatt
aatgaaaatcttatttttattttaccgaccgaccgactcatattttgcta
acgatctgcccgtagaacaacaaatttaattggtctcgcctaaagggaca
taaaagtagtaaaatgtaaacattgctcgaaccacgtgtcattaaagaga
aaaattaaaatcacgtgtttaaaacaaacttgtaaatcaaaatcagccat
acacgcttttttttataagaatagtgtactttggatgagggtcaagtatt
cttaagaaattgccaaaattgaggttgaaatattcttaacatattcttat
tttttagacttgacttttttacaaacatgagaaatgataaatttgagagt
tttggacttttgagtgaacatttgggttaaatTTACATTCTTcttcaaag
cttcaatttatctctaacaaaggaagcagttttttctgttaaccaaatac
aaaatgactgtattcttatcaaattctgtgaaattcaccttagagggtat
tcttagggtattcttacgatttggccaattttcaccctggtattcttata
gaagatattcttataaaaaaagggtgtatatttgttttgattttttattt
ggacatttgtttttattttgtatcccgctgcatacggtttgtttacaaat
ttcatcagtatgtccctttaaaagaaTGGTCTCATATCAAACCACCGTAT
CTTTCTGAGAAAATCCTCAAAACATTTTACAGGAAAATGATCTAAAATCG
TTCATTTTAGGAGCGGAAAACGCATTGAAGTACGGAATTCGTGGAACTTT
TACATGGACCAAATGGACCGTAGATGTTGCGCTTTCGTCTTCAACTG Coding sequence (CDS) from alignment at sc0000118:50245..52891+ >TCONS_00010863 ID=TCONS_00010863|Name=TCONS_00010863|organism=Clytia hemisphaerica|type=CDS|length=1494bp|location=Sequence derived from alignment at sc0000118:50245..52891+ (Clytia hemisphaerica)
GTTGCAAATCCAAACACAGAAACGATTGGCACTTCGGGGCCGAGATTGGG
ACGGAACGCGGGAGCAGGGCCAGGAATAAAAGGAACACAGAAGATGTCAA
CTCCTTGCAACTTCTATAAAAACACTGGAAATCTTGaagttcatcaaaat
actgAGAATGTTTTAAATAGGGAATTGATTCTGAATGTGGAGCAAACAAT
TACTTTCCAATCAACTGATGATATTTTGCAAATGTTGAAAACGCATCctg
attttgaaagaattccACCAGACTCTTTGCAACCTATCATTGCAGGCTTA
CTTTCAGGTCTAATGGCTGCAGTAGGAACAATAGTTTTGGCAATCTCACC
CATTGGAACGGCTCTTGTCATCAAAATCTTGGCTGGTGCTGTGCTCTCTG
GTGGTGTTGCAGGAGCGGAAAACGCATTGAAGTACGGAATTCGTGGAACT
TTTACATGGACCAAATGGACCGTAGATGTTGCGCTTTCGTCTTCAACTGT
TGCAAATCCAAACACAGAAACGATTGGCACTTCGGGGCCGAGATTGGGAC
GGAACGCGGGAGCAGGGCCAGGAATAAAAGGAACACAGAAGATGTCAACT
CCTTGCAACTTCTATAAAAACACTGGAAATCTTGaagttcatcaaaatac
tgAGAATGTTTTAAATAGGGAATTGATTCTGAATGTGGAGCAAACAATTA
CTTTCCAATCAACTGATGATATTTTGCAAATGTTGAAAACGCATCctgat
tttgaaagaattccACCAGACTCTTTGCAACCTATCATTGCAGGCTTACT
TTCAGGTCTAATGGCTGCAGTAGGAACAATAGTTTTGGCAATCTCACCCA
TTGGAACGGCTCTTGTCATCAAAATCTTGGCTGGTGCTGTGCTCTCTGGT
GGTGTTGCAGGAGCGGAAAACGCATTGAAGTACGGAATTCGTGGAACTTT
TACATGGACCAAATGGACCGTAGATGTTGCGCTTTCGTCTTCAACTGTTG
CAAATCCAAACACAGAAACGATTGGCACTTCGGGGCCGAGATTGGGACGG
AACGCGGGAGCAGGGCCAGGAATAAAAGGAACACAGAAGATGTCAACTCC
TTGCAACTTCTATAAAAACACTGGAAATCTTGaagttcatcaaaatactg
AGAATGTTTTAAATAGGGAATTGATTCTGAATGTGGAGCAAACAATTACT
TTCCAATCAACTGATGATATTTTGCAAATGTTGAAAACGCATCctgattt
tgaaagaattccACCAGACTCTTTGCAACCTATCATTGCAGGCTTACTTT
CAGGTCTAATGGCTGCAGTAGGAACAATAGTTTTGGCAATCTCACCCATT
GGAACGGCTCTTGTCATCAAAATCTTGGCTGGTGCTGTGCTCTCTGGTGG
TGTTGCAGGAGCGGAAAACGCATTGAAGTACGGAATTCGTGGAACTTTTA
CATGGACCAAATGGACCGTAGATGTTGCGCTTTCGTCTTCAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010863-exon-sc0000118-1491911889:50245..50551 | TCONS_00010863-exon-sc0000118-1491911889:50245..50551 | Clytia hemisphaerica | exon |
| TCONS_00010863-exon-sc0000118-1510915933:50245..50551 | TCONS_00010863-exon-sc0000118-1510915933:50245..50551 | Clytia hemisphaerica | exon |
| TCONS_00010863-exon-sc0000118-1575043694:50245..50551 | TCONS_00010863-exon-sc0000118-1575043694:50245..50551 | Clytia hemisphaerica | exon |
| TCONS_00010863-exon-sc0000118-1491911889:50960..51064 | TCONS_00010863-exon-sc0000118-1491911889:50960..51064 | Clytia hemisphaerica | exon |
| TCONS_00010863-exon-sc0000118-1510915933:50960..51064 | TCONS_00010863-exon-sc0000118-1510915933:50960..51064 | Clytia hemisphaerica | exon |
| TCONS_00010863-exon-sc0000118-1575043694:50960..51064 | TCONS_00010863-exon-sc0000118-1575043694:50960..51064 | Clytia hemisphaerica | exon |
| TCONS_00010863-exon-sc0000118-1491911889:52805..52891 | TCONS_00010863-exon-sc0000118-1491911889:52805..52891 | Clytia hemisphaerica | exon |
| TCONS_00010863-exon-sc0000118-1510915933:52805..52891 | TCONS_00010863-exon-sc0000118-1510915933:52805..52891 | Clytia hemisphaerica | exon |
| TCONS_00010863-exon-sc0000118-1575043694:52805..52891 | TCONS_00010863-exon-sc0000118-1575043694:52805..52891 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000118 | supercontig | sc0000118:50245..52891 + |
Blast
The following BLAST results are available for this feature:
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