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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010811 ID=TCONS_00010811|Name=TCONS_00010811|organism=Clytia hemisphaerica|type=transcript|length=2105bpRun BLAST on NCBI protein sequence of TCONS_00010811-protein >TCONS_00010811-protein ID=TCONS_00010811-protein|Name=TCONS_00010811-protein|organism=Clytia hemisphaerica|type=polypeptide|length=685bp MENYSANPDLMRYLQGEISFDTWLEQQGNEDEAENHHVQQRVGTTPSGRPRun BLAST on NCBI transcript from alignment at sc0000117:25843..49391- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010811 ID=TCONS_00010811|Name=TCONS_00010811|organism=Clytia hemisphaerica|type=transcript|length=23549bp|location=Sequence derived from alignment at sc0000117:25843..49391- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000117:25843..49391- >TCONS_00010811 ID=TCONS_00010811|Name=TCONS_00010811|organism=Clytia hemisphaerica|type=CDS|length=32880bp|location=Sequence derived from alignment at sc0000117:25843..49391- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010811 vs. Swiss-Prot (Human)
Match: TF3C3 (General transcription factor 3C polypeptide 3 OS=Homo sapiens GN=GTF3C3 PE=1 SV=1) HSP 1 Score: 200.675 bits (509), Expect = 2.630e-54 Identity = 140/449 (31.18%), Postives = 226/449 (50.33%), Query Frame = 1
Query: 760 KLPELLRLQMGQANLLVAKQDFKQAADICMEIVREAPYSGLPFKTLAFIYDEQGDKEMALQYSLIYAYLDCRDSHEWIEMGRRCREADNVKQEMACYDKACKYKPWDIELQWERSLKYFAYGDYRKCLDIYFQIHKRVTPVDKITYMSCGKRIAKLYHKLGLKDKVQYSLQLAFDACDTVEDFEAVNILCEIYIENKEFINAIELIIQQCGVKIPSFVYERIKALTRGDSKRLDEFLSQSVEMTKEKFEERTNELASNVADTLKEGQETLNIMENFNTASPEKTYATLEPANENATVETSEYYCPSNLPLDLRVKLAQCLIYSNQLDFVDDIVYPLFSESIXXXXXXXXXXXEAYYDIGNYREALKYIVEVIASEKYNQAAVWLKLAEVYEHLDEMNQCIDAYYQVLHLAPLQVSIRLALASALKIVGRDEEALTVLSE-YDGTRLDED 2103
KLP LR MG+AN+ A+ + ++A +CMEI+R+AP + PF TLA IY++QGD E +LQ+ LI A+L+ D+ EW+ + E DN+KQ + CY KA KY+P ++ WERS Y GD++ +D Y +I ++P D +M + +AK Y++ + AF + E VNI E+YI NK++ A+E+I G+ V E+ T E+ N+ NV T+ +G P ++ + L V CL++ N L+ ++ ++ L ++ +D+GDL LD+ EA+ D+G Y AL + ++ SE+YN A VWL+ AE + L M + ++Y +V+ LAPL + R++L++ + +G+ E+AL L YD L +D
Sbjct: 144 KLPRALRGLMGEANIRFARGEREEAILMCMEIIRQAPLAYEPFSTLAMIYEDQGDMEKSLQFELIAAHLNPSDTEEWVRLAEMSLEQDNIKQAIFCYTKALKYEPTNVRYLWERSSLYEQMGDHKMAMDGYRRILNLLSPSDGERFMQLARDMAKSYYEANDVTSAINIIDEAFSKHQGLVSMEDVNIAAELYISNKQYDKALEIITDFSGI-----VLEK---------------------KTSEEGTSEENKAPENVTCTIPDG-------------------------------------VPIDITVKLMV----CLVHLNILEPLNPLLTTLVEQNPEDMGDLYLDVAEAFLDVGEYNSALPLLSALVCSERYNLAVVWLRHAECLKALGYMERAAESYGKVVDLAPLHLDARISLSTLQQQLGQPEKALEALEPMYDPDTLAQD 525 The following BLAST results are available for this feature:
BLAST of TCONS_00010811 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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