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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010792 ID=TCONS_00010792|Name=TCONS_00010792|organism=Clytia hemisphaerica|type=transcript|length=486bp
taaaagaacaaaaactATAATGGCAGAAGCAGTGGTCACAGCGGCTATCG
GTGCTACGGTGAAAGAAATCATCGGTGCTATAAAGACAAAAAACCCTGTT
CGAGAAAACGTTCTTCAAATTTCTAGTAATTATCACGAAATGTTCAAAGT
TCGTGTGGAAAGTCCAGAGCTATTACTCATCAAGTTAAATAGAGGTGGGA
ATCTCAAAGTGCAGTTGGTTCGATCAGATTCGGCCCTTGGCACCGCCCAT
ATGGAAGGTGTTTTTAACCACCTCAACAGTAAGGGTGGGAAGAAGTTTGC
TAGATCTTACAGATCGGATAAGGGAGGATTTAATACAAGACTCTCAGCGG
ATGCCCAAGATGTGTTGGTTATCACACTGGAAGCTCACCACTTTTGCAGT
GCGTTGATTGGTCAAGGATCCACCGAAATGGACATATCGGTTTCATATTG
TTAATCACCAcaaaagcaaattttttttctcattta Run BLAST on NCBI transcript from alignment at sc0000117:306341..312138+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010792 ID=TCONS_00010792|Name=TCONS_00010792|organism=Clytia hemisphaerica|type=transcript|length=5798bp|location=Sequence derived from alignment at sc0000117:306341..312138+ (Clytia hemisphaerica)
taaaagaacaaaaactATAATGGCAGAAGCAGTGGTCACAGCGGCTATCG
GTGCTACGGTGAAAGAAATCATCGGTGCTATAAAGACAAAAAACCCTGTT
CGAGAAAACGTTCTTCAAATTTCTAGTAATTATCACGAAATGTTCAAAGT
TCGTGTGGAAAGTCCAGAGCTATTACTCATCAAGTTAAATAGAGGTGGGA
ATCTCAAAGTGCAGTTGGTTCGATCAGATTCGGCCCTTGGCACCGCCCAT
ATGGAAGGTGTTTTTAACCACCTCAACAGTAAGGGTGGGAAGAAGTTTGC
TAGATCTTACAGATCGGATAAGGGAGGATTTAATACAAGACTCTCAGCGG
ATGCCCAAGATGTGTTGGTTATCACACTGGAAGCTCACCACTTTTGCAGT
GCGTTGATTGGTCAAGGTTCCACCGAAATGGACATCTCAGTTTCATATTG
TTAATCACCACAAAAACAAACACTTagaagacttttttctttaaaaaatt
agctctagtttagacggccgactttctacCTTGCCTTTCCATTGCATGAA
ATatgttgaaagaagacattgcattgacgtcaaaagatggCAATGCATTG
TCTTTAGACACCCAACTTTATgtccactttaattcacaattcgAATATTC
ATGGCGAAAAGCGGGCCtcctaaactagagcttaatGATATAAATAATTC
TAGTCAGGTTTTGTACAATGTTGAAAGAAGACACTTTTTTTAANCGAAAT
GTTCAAAGTTCGTGTGGAAAGTCCAGAGCTATTACTCATCAAGTTAAATA
GAGGTGGGAATCTCAAAGTGCAGTTGGTTCGATCAGATTCGGCCCTTGGC
ACCGCCCATATGGAAGGTGTTTTTAACCACCTCAACAGTAAGGGTGGGAA
GAAGTTTGCTAGATCTTACAGATCGGATAAGGGAGGATTTAATACAAGTC
TCTCAGCGGATGCCCAAGACGTGTTGGTTATCACACTGGAAGCTCACCAC
TTTTGCAGTGCGTTGATTGGTCAAGGATCCACCGAAATGGACATCTTAGT
GTCATATTGTTAATCACCACAAAAGCAAACACTTagaagacttttttctt
taaaaagttaGCTCTAGTTTGGACGGCCGATTTTCTACCTTGCCTTTCCA
TTGCATGAAATatgttgaaagaagacattgcattgacgtcaaaagatggC
AATGCATTGTCTTTAGACACCAACTTTATgaccactttaattcacaattc
gAATATTCATGGCGAAAAGCGGGCCtcctaaactagagcttaatGATATA
AATGATTCTAGTCAGGTTTTGTACAATGTTGAAAGAAGACACTTTTTTTA
ATGTGTTAATTTGTACGTCTGATGATTGCCGTTAGCCATGAAACTTGAAG
TAATGTACTTTTTTTAACagcgaaattttgaaatttataaatgattctat
atttttaaaatgaaaattcaaaatagaaCTCTTAGCcataatgttgattt
ttttgacatcatcaaattttcagcaccctcgcgagccagggccgataaac
gattctgcgacttaaagaggccagtaccgtaaaattggaggaatcgttta
gggtcctggtactttagaagagaaaatatcaagaatcttgatatttttcg
acctttggactctGGCAGCTTGAGTGTGGGCAATATGTTGCGAAGACAAG
TACAGCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNAGGGAAAtgcaagtagaaaatgactgtgtttgttgtttggaatag
agaatatggctttcctctgtcttttaatggttttttactggctcaaaata
aattattagccttgcaataagtctcaacttccaagtactgttttttaaat
ttggctctctgatatggatatttttttgtggtgtagttttagggttggtg
cagaaaactgctgtgaactggtcttaaacagttaaagctataaattaact
ggctttaaacacactcagcaaatctaaagaaatttcaaccttgaaattaa
tgctttctttctcacttttagattatgtgaaaaataaataaaacattttc
aacagctcTATAATGCTTTGCTGCTGACTTTGCTGCTGATGCTGCTCCTC
ATCCAAAAAGTAgccgatagaatttttatatccagcctcaagaacgtaaa
ctccaattgtccacacatatcatgtcaccacagctgggaacgatgaacga
cagtgacagtagcagtagaatgaattcaatcagatttttgtacaacaaca
taatgtttttgtgtgtaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgaaatgcaatttttaat
tttggcaaaaactaatttgggcaaatagcacagtatataaagtggttctt
ttatgctaaaaaattagtgtttcaaatagaactttCGGGTTACTTAGGGg
ctgtccacatagtacgttcccactaaaatgtcaaaaattgagtatatata
tACGCCTCCCCCTATCCTATAGGCAAGCAGATGCAAATAGCTATACCCCA
TACCCCCtggtgagtacgtacttttttcattcacacccccccctggctga
aaaaaaaaatcaaattcaaaaggcttgagttttcccctttttctatgaga
gagaaacagctgatattttgtaaggaacaagcgaataatagttctctttt
tattctctttcaatcaattttacaagcaaaaaaagggctgtgaatttttt
tttctgcctacttactttttctttcgacccctccccttccccttcccctc
tgtacgcaagcatatgcttttgagaagacaccccctctcccccttcgtGC
GTACATACTATGTNGCGTACCCTCCCCTTCccatatgcttttgagaagac
accccctctcccccttagtgcgtacgtactatgtggacggccctttagga
aaatcactggaaattttaattctggcaagaacttattaggggcccttatt
atggtgaggcagggtgaggaagcaattctttcaattttggcgaaaactaa
ttttggtgaattttgttctgttactatatcatcattcattaagaatttat
ttatttatttagagaacacattgaattatgtaaaatacccATTTGAANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTGactagtaaaatgaatttgatattcttgtgtgaatctttatacgt
gccatttttaagatttttcttgtgaatctttaaacgattttcaactcagg
gttttgataattaaaacatggtgtaataagttttttagagatttggtaga
gatcaaaagaaatcttcaggaatacattttacatgaaactttaataaact
tggaacatttcattttattcaattaacaaaaaaagttagaaatatttact
ggtcctatggaaaatgttcatgggaaaggcttgaaaataatattagattt
tgttgaatttcaatattaaaaagaggtcgattgtaatcaaggactacctt
aaaagaataaattatgacggaaataaaatttgagtgtatggcggaattcc
tggtaaatccgccaaattaaattcccgccaaatttaatttatctcgtgta
ttctccaaatttgtactatttcaggccttaaaaacaggtttttactTATT
CGgtaacaatttttggccaaaaatttccttcaaccgccaaattaaattct
cgcctaatttcttttttctagcaatccgccaaattaaattcctctgNTCA
GAACATGATGACGACagtgaaacataatctttaggtcagaataaattcaa
ctgaTTTCAATCTAAAAAGGTCTAATGACAGATTTGTTATATGTTTGCAT
AAGTTTTATCccgataaaaaaactacttccagcttcaacattttttgtca
aatttagtccAAATACACAATGTACCATGTactagtttgtatactttttt
acatttacggtcaatatgaataaattttcagtctggtaataggatatgtc
taaagaattgtttcatggtaaacattgaagaaacagatttatttcttttt
caatacttgaagtttcttgcttttacacattcatcagttgattagaattg
ttcacataaaattgccaagcttttaattgtataaaccataaccagagcat
ttttgcagtgagtttgtattgttcgtagtctcaagtttttctgaaaaagc
ttcttcaccgatcagttcattttgactaccagtcaagcaatcactggaga
tgtatgcttttttctttttcatactcctgatgcccatggtcatggacaag
atagatgtcaaaatgtaaaaacatcagtcagtcattcatcacgagtgatc
agattataaagaaacatgcaagattgctgttggaaatcagttcaagcaaa
acaatatatatgtggacagcagagggtcttttcgagtgaatctttaaact
attttccatagtcattttgtctttctgtaaaaaatcgttttacaagCAGT
TCCAGTTCGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtt
taaatgacattttgcaattttgtcaattgattggtttgccaagagttctt
catacttcaacttcttcatgttgagaatctgtctttgacttttaaattta
taaatttactatttacatcaGCCATTCATTACatagcttgttttgatttt
ttcaaattctcggaatttgtaaaatggcgggattatgctaatcgacatac
gtttcgcgtacatgcctaaaagtactttcgtttttaaagtgcaccagggc
ttatatcccccgtcaacgcgtccatcagaatcattatagcgtaagggggt
tagataagccatggagtcgagggtgaTTTTCAGTTGCAATGGACAAGTGG
AAATAATGTTTAGTGTCCATGATGTGTTGGTTGTCACACTGGAAGCTCAC
CACTTTTGCAGTGCGTTGATTGGCCAAGGATCCACCGAAATGGACATATC
GGTTTCATATTGTTAATCACCAcaaaagcaaattttttttctcattta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010792-exon-sc0000117-1491911889:306341..306756 | TCONS_00010792-exon-sc0000117-1491911889:306341..306756 | Clytia hemisphaerica | exon |
| TCONS_00010792-exon-sc0000117-1510915933:306341..306756 | TCONS_00010792-exon-sc0000117-1510915933:306341..306756 | Clytia hemisphaerica | exon |
| TCONS_00010792-exon-sc0000117-1575043694:306341..306756 | TCONS_00010792-exon-sc0000117-1575043694:306341..306756 | Clytia hemisphaerica | exon |
| TCONS_00010792-exon-sc0000117-1491911889:312069..312138 | TCONS_00010792-exon-sc0000117-1491911889:312069..312138 | Clytia hemisphaerica | exon |
| TCONS_00010792-exon-sc0000117-1510915933:312069..312138 | TCONS_00010792-exon-sc0000117-1510915933:312069..312138 | Clytia hemisphaerica | exon |
| TCONS_00010792-exon-sc0000117-1575043694:312069..312138 | TCONS_00010792-exon-sc0000117-1575043694:312069..312138 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000117 | supercontig | sc0000117:306341..312138 + |
Blast
The following BLAST results are available for this feature:
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