TCONS_00010500 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010500
Unique NameTCONS_00010500
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length451

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010500 ID=TCONS_00010500|Name=TCONS_00010500|organism=Clytia hemisphaerica|type=transcript|length=451bp
ttgaaatcagcgaagCTCAAAGTTTCAGAAGGTAAAGTTAAGGCTTAACA
AAAAACAACATGTTAACAGAAGAAAGCAAAAGGATGCATTTCATAGCAtc
acatatttttctttttgaaaatgaataaaatgataacatgataaaatggt
gaaaatcaGGGGGATTGGGGGTCGTAACAAAACATGCAAGACAACAAAAC
CTAAAGAGAGAGAGGCTTACATTCACTATAGAAATACAGAAGGTCAACTC
CAGCAGGTGGAAAGTCTCCTGGACGAGCTTTCTGATCTGCAGTTGACCAG
AAACAAAGTCAAACAAAACCAACAACTTCTCACAATCAACACCCAAGTCT
ACTAACATGCACCAACCTTTAGGGCAAAAGGATATGTACAAATTATCTAA
AATGAGCCAGTCATATTACATACACCAAAACAGtcagaaaatggtgaaaa
g
Run BLAST on NCBI

transcript from alignment at sc0000106:426495..426945

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010500 ID=TCONS_00010500|Name=TCONS_00010500|organism=Clytia hemisphaerica|type=transcript|length=451bp|location=Sequence derived from alignment at sc0000106:426495..426945 (Clytia hemisphaerica)
cttttcaccattttctgaCTGTTTTGGTGTATGTAATATGACTGGCTCAT
TTTAGATAATTTGTACATATCCTTTTGCCCTAAAGGTTGGTGCATGTTAG
TAGACTTGGGTGTTGATTGTGAGAAGTTGTTGGTTTTGTTTGACTTTGTT
TCTGGTCAACTGCAGATCAGAAAGCTCGTCCAGGAGACTTTCCACCTGCT
GGAGTTGACCTTCTGTATTTCTATAGTGAATGTAAGCCTCTCTCTCTTTA
GGTTTTGTTGTCTTGCATGTTTTGTTACGACCCCCAATCCCCCtgatttt
caccattttatcatgttatcattttattcattttcaaaaagaaaaatatg
tgaTGCTATGAAATGCATCCTTTTGCTTTCTTCTGTTAACATGTTGTTTT
TTGTTAAGCCTTAACTTTACCTTCTGAAACTTTGAGcttcgctgatttca
a
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005888XLOC_005888Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010500-exon-sc0000106-1491911889:426495..426945TCONS_00010500-exon-sc0000106-1491911889:426495..426945Clytia hemisphaericaexon
TCONS_00010500-exon-sc0000106-1510915933:426495..426945TCONS_00010500-exon-sc0000106-1510915933:426495..426945Clytia hemisphaericaexon
TCONS_00010500-exon-sc0000106-1575043694:426495..426945TCONS_00010500-exon-sc0000106-1575043694:426495..426945Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000106supercontigsc0000106:426495..426945 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.195	0.14296	0.165991	0.324792	0	0.156226	0	0	0.247078	0	0	0	0	0	0.166491	0	0.572253	0.112802	0.467524	0.170148	0	0	0.168091	0.152819	0	0	0.201021	0.643604	0.162717	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010500 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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