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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010427 ID=TCONS_00010427|Name=TCONS_00010427|organism=Clytia hemisphaerica|type=transcript|length=3173bpRun BLAST on NCBI protein sequence of TCONS_00010427-protein >TCONS_00010427-protein ID=TCONS_00010427-protein|Name=TCONS_00010427-protein|organism=Clytia hemisphaerica|type=polypeptide|length=783bp MAEARAAVSKPHVRFHEEGTSEIEQETQVAKSFFQDLKLCAFRTRRQIYNRun BLAST on NCBI transcript from alignment at sc0000106:122196..139065- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010427 ID=TCONS_00010427|Name=TCONS_00010427|organism=Clytia hemisphaerica|type=transcript|length=16870bp|location=Sequence derived from alignment at sc0000106:122196..139065- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000106:122196..139065- >TCONS_00010427 ID=TCONS_00010427|Name=TCONS_00010427|organism=Clytia hemisphaerica|type=CDS|length=32928bp|location=Sequence derived from alignment at sc0000106:122196..139065- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010427 vs. Swiss-Prot (Human)
Match: CPT1A (Carnitine O-palmitoyltransferase 1, liver isoform OS=Homo sapiens GN=CPT1A PE=1 SV=2) HSP 1 Score: 559.296 bits (1440), Expect = 0.000e+0 Identity = 317/786 (40.33%), Postives = 467/786 (59.41%), Query Frame = 1
Query: 301 MAEARAAVSKPHVRFHEEGTSEIEQET--QVAKSFFQDLKLCAFRTRRQIYNGLWPTTWDYLLGALVVVFLIMY--IDHPKLNVLSFYLWRFGDTLYLDDTYPYMFRIFAISLMSSVLYFVVVLYTRQFLMRILLSYKGWLYQPPRSQSKIVLLWGLMLRIISGRKPRLYSYQNSLPRMNVPPLKQTVKKFLESVKPILSTEDYDKMEIEAKEFQSSLGPKLQWILQLKSWWAPNYCTDWWEKYVYLMGRDPIAINSNYYCLDQGGWVPTKVQSARAAGFLTSLLIFKKLMETEKLEPL-VIRKTIPLCMFQYQRMFNAARIPKLDQDKIRHHQGSDHVVVLCNGHFYKLNVLDAHGKQLNVMDLQSQMEWI-KKDAESQLVSCDAELKVASLTASERNNWAKIRREHFSTGINRDSLHAIEEAIVVITLDTNEFDDITER--------AKYLLHGNGASIWFDKTINIVVFEDGRLGANCEHSWADAPVIGHMIEYCLVNEYLYRIYNDSGDCKPFSHPDMENVTFQRSKAIITPMRLYWDVKNELQLSINNAYRFACKNNDDLDLKVSKHDAFGKGLIKTSKTSPDAFIQMALQLAYFKDSQEKFALTYESSMTRLYLHGRTETVRSFTQEIKDFVLGMNNPSLSAGEKHQLMKNAANKHQKTYRDCMSGKGIDRHLFSLYIVCRGQGYESEFLKSALSMPWTLSTSQQPQQQMDRGFDISIPEVLETLSPGGGFGPVSDDGYGVSYMVPGDAILYFHVXXXXXXXATDSARYMDNIFWALNEM 2616
MAEA AV+ + + E Q+ S K R + I G++P + L +V V MY ID P L +++ + TL + + ++ +V ++ T ++ +++LLSY GW++ S+ +W M++I SGRKP LYS+Q SLPR+ VP +K TV ++L+SV+P++ ED+ +M A++F LGP+LQW L+LKSWWA NY +DWWE+Y+YL GR P+ +NSNYY +D +PT +Q+ARA + ++L++++ ++ E+++P+ ++ TIPLC Q++RMFN +RIP + D I+H + S H+VV G ++K+ L G+ L +++ QM+ I +E Q E ++A+LTA +R WA+ R+ +F G N+ SL A+E+A +TLD E +E AK LLHG WFDK+ VVF++G++G N EHSWADAP++ H+ EY + + L Y + G CK +P+ I P RL WD+ E Q I + A +D+D AFGKG+IK +TSPDAF+Q+ALQLA++KD KF LTYE+SMTRL+ GRTETVRS T E DFV M +P+ + ++ +L K A+ KHQ YR M+G GIDRHLF LY+V + ES FLK LS PW LSTSQ PQQQ++ FD+ E +S GGGFGPV+DDGYGVSY++ G+ ++ FH+SSK S TDS R+ ++ A+ ++
Sbjct: 1 MAEAHQAVAFQFTVTPDGIDLRLSHEALRQIYLSGLHSWKKKFIRFKNGIITGVYPASPSSWLIVVVGVMTTMYAKID-PSLGIIA----KINRTLETANCMSSQTKNVVSGVLFGTGLWVALIVTMRYSLKVLLSYHGWMFTEHGKMSRATKIWMGMVKIFSGRKPMLYSFQTSLPRLPVPAVKDTVNRYLQSVRPLMKEEDFKRMTALAQDFAVGLGPRLQWYLKLKSWWATNYVSDWWEEYIYLRGRGPLMVNSNYYAMDLLYILPTHIQAARAGNAIHAILLYRRKLDREEIKPIRLLGSTIPLCSAQWERMFNTSRIPGEETDTIQHMRDSKHIVVYHRGRYFKV-WLYHDGRLLKPREMEQQMQRILDNTSEPQ----PGEARLAALTAGDRVPWARCRQAYFGRGKNKQSLDAVEKAAFFVTLDETEEGYRSEDPDTSMDSYAKSLLHGRCYDRWFDKSFTFVVFKNGKMGLNAEHSWADAPIVAHLWEYVMSIDSLQLGYAEDGHCKGDINPN-----------IPYPTRLQWDIPGECQEVIETSLNTANLLANDVDFHSFPFVAFGKGIIKKCRTSPDAFVQLALQLAHYKD-MGKFCLTYEASMTRLFREGRTETVRSCTTESCDFVRAMVDPAQTVEQRLKLFKLASEKHQHMYRLAMTGSGIDRHLFCLYVVSKYLAVESPFLKEVLSEPWRLSTSQTPQQQVEL-FDLE--NNPEYVSSGGGFGPVADDGYGVSYILVGENLINFHISSKFSCPETDSHRFGRHLKEAMTDI 761 The following BLAST results are available for this feature:
BLAST of TCONS_00010427 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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