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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010389 ID=TCONS_00010389|Name=TCONS_00010389|organism=Clytia hemisphaerica|type=transcript|length=1758bp
TAAATTAGACTTTCCACTTTCTCGTTTCAGAGTTATACCAGTAACACAAC
AagaattaaacaaaaaacaacaaaatgaagccattgGTCACTAGGCTTTT
GATTTCACTCACACCATTGGAAACCAGTGTTTTGATCTTCGTTTCATTTG
TCTTATTTTACACAATGTACGACAAATTCACTGGTCGGCTGGTTCCTTCA
AATCTTTTACGGTTACTGACTTTCCAAGAAGGTGCTGACAAATTCCTGGT
TGAAATGAACAAAGCGCTGTCTCTATCTGGTCTTACtgtattggcatttt
catttttcccgatctataaaaaacgtgtaagataTGCATTATTATGGAGC
GCTGTCGTCCAACTCTGGATTCACGCCGTGTATTCAACGCTGAAGTATTA
CGGAAGCAAAAACATTCCtcgaatttcaacatttttttattgGAACAGTG
AACAGataaaaaagatttccattTTGCTTGGCATCATGGCGCAGGTCGTC
TTATCACTTGGATATTTCTCGTATATCGGTTGGTTCCAACTCTCCTTATT
CGGTCTTTCCTCCAGTATCTTGCATTTCTACACCATGGAAATTGATCATA
AATATGTGTTGCGCGTTCGACCGTACGCCTACATTGTCTTCCCTGTAACA
CTGCTCGCCTTTGTCTTTGGATGCAATTTATTTTAAGATGCAGAAGAAAA
GTTCTTTTGCGCATGGTTAAGTTTTGAACGTTTTTTTGTTGGATGATGAG
ATTTTTTTAGTGTATGTAATGTATAATGTTGCAGGTTACTGTGTAtagtt
taaaaatgaaataaaaaagtgtcgTATTTTCCGGTAACAATATTTAATGT
CTTTTCCTGGAATTTTTGATTTGGACCATTTCAAAAATCTAATGATGTAT
TTGTTCTCAAATGCTTAATGAACAGTTTTCCACCTTATTTTTACAGTGAA
AAACAATACATAGAAAAAGAAATGGCGCAAAAGAAATTATCTGGAGTGTT
GAAGATGTATGTCGCAGCAGGAAAAGCCGCCCCTTCGCCACCACTTGGTC
CCGCCCTTGGGCAGCGTGGTATCAATATCATGCAATTTTGTAAGGATTtc
aacgaacgaacgaaagatTACAAACAAGGAGTTCCCATACCAACCCGTGT
CGTTTACAAGGACCGCAAATTTGACTTTACGATCAGTCAGCCACCTGCAA
CCTACTTCTTGAAACAAGCTGCTGGTGTCGAAAAAGGCTCTTCCAACCCT
GGTCGTGAGATGATTGGTTCCGTAACATTGAAACAGATTTACGAGATCGC
CCTTGTCAAAGGAAAAGATGAAGGTTTTAAGAATACAGACCTTCAAGGAG
TTTGCAAATGTCTGATAGACTCTGCTCATAGTATGGGCATCGAAATAATC
AACGACAGAAGTGAAGACATGACGACGGAAGAATCTACTAGTGCTGTTGC
AAGCTGATTTTCATTGtgtaattttgaatttcatttgGATTGTCGTGTGA
ATGTTTTTAGGTTCACTGACACTACAAAATGTTTTCGTGGCATCGATTTA
TTTCTTGAGTGGCAACATGATACAGTACCAGACACTAAGAATACTCCAAT
TAATCGTCGTCCAGTTCAAACGCGATTTGTTGAATTAAAGGACTGGAATC
GCTTGGCAAAAACTGAACCTCTAGAAAACTAGAGTAAAAGATTTTATAAA
CGTATTGTATTATATAGTGGAGTCGAACTGTCTCAAACTTTTAGATTTGA
ATCTTTTG Run BLAST on NCBI transcript from alignment at sc0000106:41690..44607+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010389 ID=TCONS_00010389|Name=TCONS_00010389|organism=Clytia hemisphaerica|type=transcript|length=2918bp|location=Sequence derived from alignment at sc0000106:41690..44607+ (Clytia hemisphaerica)
TAAATTAGACTTTCCACTTTCTCGTTTCAGAGTTATACCAGTAACACAAC
AagaattaaacaaaaaacaacaaaatgaagccattgGTCACTAGGCTTTT
GATTTCACTCACACCATTGGAAACCAGTGTTTTGATCTTCGTTTCATTTG
TCTTATTTTACACAATGTACGACAAATTCACTGGTCGGCTGGTTCCTTCA
AATCTTTTACGGTTACTGACTTTCCAAGAAGGTGCTGACAAATTCCTGGT
TGAAATGAACAAAGCGCTGTCTCTATCTGGTCTTACtgtattggcatttt
catttttcccgatctataaaaaacgtgtaagataTGCATTATTATGGAGC
GCTGTCGTCCAACTCTGGATTCACGCCGTGTATTCAACGCTGAAGTATTA
CGGAAGCAAAAACATTCCtcgaatttcaacatttttttattgGAACAGTG
AACAGataaaaaagatttccattTTGCTTGGCATCATGGCGCAGGTCGTC
TTATCACTTGGATATTTCTCGTATATCGGTTGGTTCCAACTCTCCTTATT
CGGTCTTTCCTCCAGTATCTTGCATTTCTACACCATGGAAATTGATCATA
AATATGTGTTGCGCGTTCGACCGTACGCCTACATTGTCTTCCCTGTAACA
CTGCTCGCCTTTGTCTTTGGATGCAATTTATTTTAAGATGCAGAAGAAAA
GTTCTTTTGCGCATGGTTAAGTTTTGAACGTTTTTTTGTTGGATGATGAG
ATTTTTTTAGTGTATGTAATGTATAATGTTGCAGGTTACTGTGTAtagtt
taaaaatgaaataaaaaagtgtcgTATTTTCCGGTAACAATATTTAATGT
CTTTTCCTGGAATTTTTGATTTGGACCATTTCAAAAATCTAATGATGTAT
TTGTTCTCAAATGCTTAATGAACAGTTTTCCACCTTATTTTTACAGTGAA
AAACAATACATAGAAAAAGAAATGGCGCAAAAGAAATTATCTGGAGTGTT
GAAGATGTATGTCGCAGCAGGAAAAGCCGCCCCTTCGCCACCACTTGGTC
CCGCCCTTGGGCAGGTTAGTCTTTTTGTATGAGTTATTATATTATGACAT
CCATGTGTGCCGTAGAATGCAGGATTGACTTTCCGAGCCCCACATCATTT
AGACACGAGTTTGTTTCGCAGTTTATATTTGATAGAATGTGTTGAGACTG
GGCTCGACTCTCTTTCAAATTATAAAGGCTACTTTAAGTAAAACCACAAG
CAAAAATGCTAAACTTTTGAATACTTTTTGTTTCCCTCAAAACTCTAAAG
GGTAAAAGCTATTGCAATGTTATTTCAGCGTGGTATCAATATCATGCAAT
TTTGTAAGGATTtcaacgaacgaacgaaagatTACAAACAAGGAGTTCCC
ATACCAACCCGTGTCGTTTACAAGGTGAGTTTGCTCAACCGTATCATGTG
ATTTTGTACTCAGTTTCCCTCCCTCTCATCCAGTTCATTGGGTATCGAAT
TGTACAGTCTTCCATTTCTAAGTCTTCAATGGACGGAAAAGTAAGGAAAG
TTTAAATTTCAGATTATTCCTCTCCAATACTCTAACGTAGGTAGAGCACA
GTAAAGTTTCAGGACTAAAACCAACTTAGTATATGTAAttacatgataac
gagtgcaattcggttataattgcacgagtgatttttttgttattaatttt
ccgagtccgaaaaaacaaaaaaatcacgagtgcaattttcgaattgaacg
agttattatgtgattacgagctaatcgcacaatggctgtcACTACTTTTC
CCAGtaaggaaagtaaattacagaaattacactgagagttttttctcttc
tctctgtgtctttcttttattgttgtttattggttttctttctcacaaaa
taaatttcgaatgcaattaaaacgttcaatgcaaaaaaaaaatgcaagaa
aaaacattaaaatcaattttgtaaacattggcgtgGCAtcggagagtgtg
attaacgattaattgctctctacagaatgcaattaacgattaattgctct
ctttgagggcgtggcaaataagaaaaaataacccatcgtgcgattataaa
ttataattgcaataaaACATAAGCGAGAAACTTGACCAAgcatgttttat
ttttcataataaAAGACCTTTTATTTCAATCATTACTTTTAGGACCGCAA
ATTTGACTTTACGATCAGTCAGCCACCTGCAACCTACTTCTTGAAACAAG
CTGCTGGTGTCGAAAAAGGCTCTTCCAACCCTGGTAAGTGTTTCCCATGG
TTTTCTTGCCCGTTGATTGATCTCGTGATCCAACCACCATATGAATATCA
CTGTCGATGAACTGAAACCTATTTGGAAGAATAAGaccctttttctttct
tttatgtTCAGGTCGTGAGATGATTGGTTCCGTAACATTGAAACAGATTT
ACGAGATCGCCCTTGTCAAAGGAAAAGATGAAGGTTTTAAGAATACAGAC
CTTCAAGGAGTTTGCAAATGTCTGATAGACTCTGCTCATAGTATGGGCAT
CGAAATAATCAACGACAGAAGTGAAGACATGACGACGGAAGAATCTACTA
GTGCTGTTGCAAGCTGATTTTCATTGtgtaattttgaatttcatttgGAT
TGTCGTGTGAATGTTTTTAGGTTCACTGACACTACAAAATGTTTTCGTGG
CATCGATTTATTTCTTGAGTGGCAACATGATACAGTACCAGACACTAAGA
ATACTCCAATTAATCGTCGTCCAGTTCAAACGCGATTTGTTGAATTAAAG
GACTGGAATCGCTTGGCAAAAACTGAACCTCTAGAAAACTAGAGTAAAAG
ATTTTATAAACGTATTGTATTATATAGTGGAGTCGAACTGTCTCAAACTT
TTAGATTTGAATCTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010389-exon-sc0000106-1491911889:41690..42753 | TCONS_00010389-exon-sc0000106-1491911889:41690..42753 | Clytia hemisphaerica | exon |
| TCONS_00010389-exon-sc0000106-1510915933:41690..42753 | TCONS_00010389-exon-sc0000106-1510915933:41690..42753 | Clytia hemisphaerica | exon |
| TCONS_00010389-exon-sc0000106-1575043694:41690..42753 | TCONS_00010389-exon-sc0000106-1575043694:41690..42753 | Clytia hemisphaerica | exon |
| TCONS_00010389-exon-sc0000106-1491911889:43018..43113 | TCONS_00010389-exon-sc0000106-1491911889:43018..43113 | Clytia hemisphaerica | exon |
| TCONS_00010389-exon-sc0000106-1510915933:43018..43113 | TCONS_00010389-exon-sc0000106-1510915933:43018..43113 | Clytia hemisphaerica | exon |
| TCONS_00010389-exon-sc0000106-1575043694:43018..43113 | TCONS_00010389-exon-sc0000106-1575043694:43018..43113 | Clytia hemisphaerica | exon |
| TCONS_00010389-exon-sc0000106-1491911889:43882..43972 | TCONS_00010389-exon-sc0000106-1491911889:43882..43972 | Clytia hemisphaerica | exon |
| TCONS_00010389-exon-sc0000106-1510915933:43882..43972 | TCONS_00010389-exon-sc0000106-1510915933:43882..43972 | Clytia hemisphaerica | exon |
| TCONS_00010389-exon-sc0000106-1575043694:43882..43972 | TCONS_00010389-exon-sc0000106-1575043694:43882..43972 | Clytia hemisphaerica | exon |
| TCONS_00010389-exon-sc0000106-1491911889:44101..44607 | TCONS_00010389-exon-sc0000106-1491911889:44101..44607 | Clytia hemisphaerica | exon |
| TCONS_00010389-exon-sc0000106-1510915933:44101..44607 | TCONS_00010389-exon-sc0000106-1510915933:44101..44607 | Clytia hemisphaerica | exon |
| TCONS_00010389-exon-sc0000106-1575043694:44101..44607 | TCONS_00010389-exon-sc0000106-1575043694:44101..44607 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000106 | supercontig | sc0000106:41690..44607 + |
Blast
BLAST of TCONS_00010389 vs. Swiss-Prot (Human)
Match: RM11 (39S ribosomal protein L11, mitochondrial OS=Homo sapiens GN=MRPL11 PE=1 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 8.023e-37 Identity = 63/122 (51.64%), Postives = 87/122 (71.31%), Query Frame = 3
Query: 1062 QRGINIMQFCKDFNERTKDYKQGVPIPTRVVYK-DRKFDFTISQPPATYFLKQAAGVEKGSSNPGREMIGSVTLKQIYEIALVKGKDEGFKNTD--LQGVCKCLIDSAHSMGIEIINDRSED 1418
QRG++I QFCK+FNERTKD K+G+P+PT+++ K DR F+ I QP +YFLK AAG+EKG+ G+E+ G VTLK +YEIA +K +DE F D L V + +I SA S+GI ++ D S +
Sbjct: 41 QRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLSSE 162
The following BLAST results are available for this feature:
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