TCONS_00010376 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010376
Unique NameTCONS_00010376
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length475

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010376 ID=TCONS_00010376|Name=TCONS_00010376|organism=Clytia hemisphaerica|type=transcript|length=475bp
acagcattcttaggttaggatcctaattcagactagatttttAAGTATCT
CTCAAGCGTAAAATGGTACTTTTGTGAAATAAGTGAGCCCTACTTAAGGG
TAactggcaatttataattgaaaatgctgtaaatatggcattcttagctt
gagtagcaaaattgtCAGAAAGTTTCAGTCTAAAAAAGGGATCCTggcca
gcggcacgtccccatACCCAATTTTACCTaagtgacccccccccccttcc
cccgGGTGAAAGCCCCATTTCGAGTTGGCTCAAAGAGCTTTATTAAGACT
TGGTCAGCTGTACATTGAAAAGCCGTTCGTTTTTTTCGCTGAATCTTCAA
ATAGAACGCCAGAAAGGACATATTCACATTTGGAATCTACTGATGTTGTT
TATGCACCCAATAGATACAataaaagtcataatatttgagaaaaagaaaa
attcccacgaaattttataaccacG
Run BLAST on NCBI

transcript from alignment at sc0000104:616740..617214

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010376 ID=TCONS_00010376|Name=TCONS_00010376|organism=Clytia hemisphaerica|type=transcript|length=475bp|location=Sequence derived from alignment at sc0000104:616740..617214 (Clytia hemisphaerica)
Cgtggttataaaatttcgtgggaatttttctttttctcaaatattatgac
ttttatTGTATCTATTGGGTGCATAAACAACATCAGTAGATTCCAAATGT
GAATATGTCCTTTCTGGCGTTCTATTTGAAGATTCAGCGAAAAAAACGAA
CGGCTTTTCAATGTACAGCTGACCAAGTCTTAATAAAGCTCTTTGAGCCA
ACTCGAAATGGGGCTTTCACCcgggggaagggggggggggtcacttAGGT
AAAATTGGGTatggggacgtgccgctggccAGGATCCCTTTTTTAGACTG
AAACTTTCTGacaattttgctactcaagctaagaatgccatatttacagc
attttcaattataaattgccagtTACCCTTAAGTAGGGCTCACTTATTTC
ACAAAAGTACCATTTTACGCTTGAGAGATACTTaaaaatctagtctgaat
taggatcctaacctaagaatgctgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005835XLOC_005835Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010376-exon-sc0000104-1491911889:616740..617214TCONS_00010376-exon-sc0000104-1491911889:616740..617214Clytia hemisphaericaexon
TCONS_00010376-exon-sc0000104-1510915933:616740..617214TCONS_00010376-exon-sc0000104-1510915933:616740..617214Clytia hemisphaericaexon
TCONS_00010376-exon-sc0000104-1575043694:616740..617214TCONS_00010376-exon-sc0000104-1575043694:616740..617214Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:616740..617214 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.24366	2.47117	1.06329	0.593963	0.181397	0.143528	0.171475	0.490254	0.224785	0.13994	0	0.088827	1.42824	1.96837	0	0	0	0	4.11164	2.8189	0	0.188698	1.09023	0.973218	0.143199	0.12861	0	0	0.150662	0.632556
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010376 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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