|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010352 ID=TCONS_00010352|Name=TCONS_00010352|organism=Clytia hemisphaerica|type=transcript|length=860bp
ataaaatcaGAATTGAGACAAATTTTAACTAACAACCTTGTACCCATGGC
AACTCCTTACTTAAACACGTCTTTCTACAACTCAACTATCAATATCACAA
CACCTGTACCTGGGCGTGGCCCGCCTCCGCCCGATGAGCCAATGATAAAG
GATTGGTTATTAATCAGTGTTTTCTCCATCATAATGGTTTCAGGAGTCAC
TGGCAATGCTTTAGTTGTGTATGTGTTTGGTAAAAAACGGCTTCTCAATA
ACACTGAACTGCTTATTCTGTACCTTGGAATCATCGATGTAATCTCCTCT
TTTTTCGTACCCATACTGAATATATATTGGATATATACTGGATATAAAAC
GTGGCATTTCGGAGAAATAGGATGTAAAATCCTACCAATGATCAACCCAT
TCTTAACCAAGGCTTCAGGCTGGGTCTTATTGATCTTTGCTGTTGAACGA
TATTGCGCCATTGTAACGCCCTTTACCAAAAGGCTTACGCCCTTTTTAAT
CAAGATGTTGTGTCTTGGTTCCTTACTTATTTCAGCTGCAATGTACGTTC
ATTACTCCGTTGCATTAACGCATAAATTCTACGGTGGTCAGTGTGTAGTT
CCGAATATAACAGTGTCCGAATTCGGATTCCCGGAATGTGTTTTTATCAT
CGTCCGGCTACTTTCGTTTCTTTTCATATTCATTTTCACCAATGTTCGGA
TCTATATAACGTTACGGAAAAACAATAAGCGTTTTGTAAGCAAGGAATTA
CGAGAGTCTCAAACGAATCGAACTAAAAAGACTATGCGTATTTTAAGTGC
TATGGGAATCGTCTTCATAATGCTTGTATTTCCTAAGGAACTTCTACAAC
TTGTTTATAC Run BLAST on NCBI protein sequence of TCONS_00010352-protein >TCONS_00010352-protein ID=TCONS_00010352-protein|Name=TCONS_00010352-protein|organism=Clytia hemisphaerica|type=polypeptide|length=286bp
IKSELRQILTNNLVPMATPYLNTSFYNSTINITTPVPGRGPPPPDEPMIK
DWLLISVFSIIMVSGVTGNALVVYVFGKKRLLNNTELLILYLGIIDVISS
FFVPILNIYWIYTGYKTWHFGEIGCKILPMINPFLTKASGWVLLIFAVER
YCAIVTPFTKRLTPFLIKMLCLGSLLISAAMYVHYSVALTHKFYGGQCVV
PNITVSEFGFPECVFIIVRLLSFLFIFIFTNVRIYITLRKNNKRFVSKEL
RESQTNRTKKTMRILSAMGIVFIMLVFPKELLQLVY Run BLAST on NCBI transcript from alignment at sc0000104:262250..263109 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010352 ID=TCONS_00010352|Name=TCONS_00010352|organism=Clytia hemisphaerica|type=transcript|length=860bp|location=Sequence derived from alignment at sc0000104:262250..263109 (Clytia hemisphaerica)
GTATAAACAAGTTGTAGAAGTTCCTTAGGAAATACAAGCATTATGAAGAC
GATTCCCATAGCACTTAAAATACGCATAGTCTTTTTAGTTCGATTCGTTT
GAGACTCTCGTAATTCCTTGCTTACAAAACGCTTATTGTTTTTCCGTAAC
GTTATATAGATCCGAACATTGGTGAAAATGAATATGAAAAGAAACGAAAG
TAGCCGGACGATGATAAAAACACATTCCGGGAATCCGAATTCGGACACTG
TTATATTCGGAACTACACACTGACCACCGTAGAATTTATGCGTTAATGCA
ACGGAGTAATGAACGTACATTGCAGCTGAAATAAGTAAGGAACCAAGACA
CAACATCTTGATTAAAAAGGGCGTAAGCCTTTTGGTAAAGGGCGTTACAA
TGGCGCAATATCGTTCAACAGCAAAGATCAATAAGACCCAGCCTGAAGCC
TTGGTTAAGAATGGGTTGATCATTGGTAGGATTTTACATCCTATTTCTCC
GAAATGCCACGTTTTATATCCAGTATATATCCAATATATATTCAGTATGG
GTACGAAAAAAGAGGAGATTACATCGATGATTCCAAGGTACAGAATAAGC
AGTTCAGTGTTATTGAGAAGCCGTTTTTTACCAAACACATACACAACTAA
AGCATTGCCAGTGACTCCTGAAACCATTATGATGGAGAAAACACTGATTA
ATAACCAATCCTTTATCATTGGCTCATCGGGCGGAGGCGGGCCACGCCCA
GGTACAGGTGTTGTGATATTGATAGTTGAGTTGTAGAAAGACGTGTTTAA
GTAAGGAGTTGCCATGGGTACAAGGTTGTTAGTTAAAATTTGTCTCAATT
Ctgattttat Coding sequence (CDS) from alignment at sc0000104:262250..263109 >TCONS_00010352 ID=TCONS_00010352|Name=TCONS_00010352|organism=Clytia hemisphaerica|type=CDS|length=858bp|location=Sequence derived from alignment at sc0000104:262250..263109 (Clytia hemisphaerica)
ATAAACAAGTTGTAGAAGTTCCTTAGGAAATACAAGCATTATGAAGACGA
TTCCCATAGCACTTAAAATACGCATAGTCTTTTTAGTTCGATTCGTTTGA
GACTCTCGTAATTCCTTGCTTACAAAACGCTTATTGTTTTTCCGTAACGT
TATATAGATCCGAACATTGGTGAAAATGAATATGAAAAGAAACGAAAGTA
GCCGGACGATGATAAAAACACATTCCGGGAATCCGAATTCGGACACTGTT
ATATTCGGAACTACACACTGACCACCGTAGAATTTATGCGTTAATGCAAC
GGAGTAATGAACGTACATTGCAGCTGAAATAAGTAAGGAACCAAGACACA
ACATCTTGATTAAAAAGGGCGTAAGCCTTTTGGTAAAGGGCGTTACAATG
GCGCAATATCGTTCAACAGCAAAGATCAATAAGACCCAGCCTGAAGCCTT
GGTTAAGAATGGGTTGATCATTGGTAGGATTTTACATCCTATTTCTCCGA
AATGCCACGTTTTATATCCAGTATATATCCAATATATATTCAGTATGGGT
ACGAAAAAAGAGGAGATTACATCGATGATTCCAAGGTACAGAATAAGCAG
TTCAGTGTTATTGAGAAGCCGTTTTTTACCAAACACATACACAACTAAAG
CATTGCCAGTGACTCCTGAAACCATTATGATGGAGAAAACACTGATTAAT
AACCAATCCTTTATCATTGGCTCATCGGGCGGAGGCGGGCCACGCCCAGG
TACAGGTGTTGTGATATTGATAGTTGAGTTGTAGAAAGACGTGTTTAAGT
AAGGAGTTGCCATGGGTACAAGGTTGTTAGTTAAAATTTGTCTCAATTCt
gattttat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010352-exon-sc0000104-1491911889:262250..263109 | TCONS_00010352-exon-sc0000104-1491911889:262250..263109 | Clytia hemisphaerica | exon |
| TCONS_00010352-exon-sc0000104-1510915933:262250..263109 | TCONS_00010352-exon-sc0000104-1510915933:262250..263109 | Clytia hemisphaerica | exon |
| TCONS_00010352-exon-sc0000104-1575043694:262250..263109 | TCONS_00010352-exon-sc0000104-1575043694:262250..263109 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000104 | supercontig | sc0000104:262250..263109 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
|
