TCONS_00010302 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010302
Unique NameTCONS_00010302
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2740

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010302 ID=TCONS_00010302|Name=TCONS_00010302|organism=Clytia hemisphaerica|type=transcript|length=2740bp
AAAAAAGGCTTTTGAGACTTCTTCGACAATCTTTGCTTCAGAATGAACGT
GTTCAGCAAATTTGGAGAAACACTCCACTCAGTCGATGCGCATGCGCTAT
TGAAATCAATCGGTCTTGAACAAATGATGTCAGATGCGCCAACAGACCAT
AAATATCTAGCCTACCTTAGTGGTGGAATCCTAGCTTCGGCTGCAGTATT
ATTTGTCGGTAACCGTTTGTTTCATGATCGTCTTTCCAGTTGGAACCTAC
CAGGACCGAAAAGTTCACTCCTGCCGATAGACCTGTTCAAAGGTCACAAA
AACCAACACCAACTACACTTATTGTTAGACGACTATGTGAAAACTTACGG
CGAAACTTTCGCTTTTAATTACAAAGGACAGCCTGTTGTCGCAACGACAG
ACGAGGATATCATACATAAAATATTATGGAAAGAATTCCCAAACTTTGAA
AACAGAAAGTTCTTTGTCGAGATGCCGTGGCCTTGTCAACACATGGTAAC
CATGGCAAAAGGAGCAAAGGCCAAAATGATCAGAAACCTTTTGAAAGCTG
TATTAGACgccaaaagtatcaaaaataaTTGGGCTCATTTTCAAGAAGCG
AACCAGGACGTGGAAGAGCTCTTGAGGGACGCCGCGTTAAACATGCTAGA
AGTTAATTCGACAAGTTTAGCAAATGGATATATCATGCAGATCATCACCA
AGATGGCATTTTCGCTTGATTGCTCCAACCAATCAGATCTCAACAAACAA
TTGGTCCAACTATCACACCTCTTTACTAGACCTCCAACATGGCTTCAAAG
CTGTTCCAGTCTCCCAATCATTGGAAACTTGTTGAAACTTTCCCCATGGG
GATTTAACTCAAGTTTGCATCAGTTCATAAAGATTGCAACAGACATTGTT
GTGGAAAGACGCAAAGAAAAGAATCGCGAACCACAGGATGTATTGGACGT
TCTGTTAGCAGCACAATCCAAAGACTCCAACATCAGCACTGAAATTCTAT
TAGCTCAGGCTATTGTTCTCCTCACTGTCGTCCACGCTTCAACCGCCACG
ACGATCTCCATAGCAACCTATTATATCGCCAAACACAAAGATGTACAAAG
GAGACTACAACAAGAGATTGACAGTATCTCAATGGAAGATGGATTTCCAT
CTTGGGAACATCTACATAAACAGTTGCCATACCTTGGACAAGTTGTCAAT
GAAACTTTACGCCTCTACCCGTCAGCCTTTATGTTGATGCGTGAATGTAC
AAAGCCAACAACAGTCAATGGCATCTCCTTTGAAAAAGGTGACGGAGTTC
TCATCCCAACCTATTCGATGCATCGAGATCCTAAAGTTTTCACTGATCCT
GAACAATTCAATCCAGACCGGTTCGAGACCAAACCATCAAGACATTATTA
TCCGTTCGGTGACGGCTACCGTATGTGTCCGGGAAAAGAAATGGCTTTGT
CCGAAATTAAAACCTACTTAGCTTCGAtgttgaaaaactttgatttgTCA
CTTGTTGACGAGAACCAAGAATTATGCGTCAAATCATACATTTCAGCTCA
AACCACAATGGCGGTGGATGAACCAATCCAAATTCGTGTACAAAAAAGAC
GTCATTAGATGTAATTTATAATGTAACCAAGGATGTCCTATATCTACCAT
CGgttaaattttgcagatttttcgaATCCATGGAAACAATTGATGATCTG
TTTTCTGGATGTTATATCTCTGATCAACCTCTACACCAATACTTCATGAC
AAAGAGTACGAGTTTACTTGTGTCTAATGACGGATGTTTGAAGTCATTGA
TGTGTTTTAATAGATACACTCTCTTGGACCCCCCTCCCCCTGACCCACTG
Gaaagtttttccaaattttcgtccccggtagaaaaaaataccctaaaatt
tcaggCCTATTTGCTTTTTTGACCgctaaaaacaaaagaattttattCCC
CATTGGCGGGAGTTCGATAGagattttatccccactgtgggaagaaTTTC
TAACGGGGCTTAGTGACAGAGGTGTAGATACAGATATTTGACTCCGATAA
GTCCGAACACAACCTTCTTGTGAATTTCGGGTTAACTGGTATATTCGGTT
AATGAAAGACTGTATTAtagtatggcgcgccaaaaggctatttaatacta
actttttttataataccaacttttttttataatatcaactttttttataa
tatcaacttttttttttataataccaacttttttttttataaaaccaact
ttttttttatagtaccaactttttttttagttcaaagttttttcataaCA
CCAATTTTTGTCTCGCTTACTATGCGTGTATAATCGATCAAGTGTATTaa
aatgaaagttggtattataaaaaaaaagttgatattataaaaaaagttgg
tattataaaaaaaagctggtattataaaaaaaagttagtattaaaaagcc
tttttggcGCGCCATATTATAGCCTCACATTCGTAACAAAAGTTGTGCAG
GTATCATAACATATCCACATTAAAACGGAGTATGGGAGGTGTTGAAGAAC
CAAGAACTTTTGTATATGGTTCATTGCAGAAGAAAAAGTTGGTAATATTT
TGTTTGGTTAAATTCAAGAAGgaataaatttattttaaaaagacaattat
TTCTTCATTATGTTAATTGTAAATAATCATGCATATATATAATCTTTAAT
ATggtgcttattaaaaaaacacatGAATCTTAAAATAGCA
Run BLAST on NCBI

transcript from alignment at sc0000104:175374..187829-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010302 ID=TCONS_00010302|Name=TCONS_00010302|organism=Clytia hemisphaerica|type=transcript|length=12456bp|location=Sequence derived from alignment at sc0000104:175374..187829- (Clytia hemisphaerica)
AAAAAAGGCTTTTGAGACTTCTTCGACAATCTTTGCTTCAGGTACTTGCA
TATTGTTGTTCTTTTTAGCGTATGTATAGAATGGCGTAATTTGGGCACTG
GCATTTGTATATAAAGGTCAGTCTTTCCATGATGGCGTAATGACGTTATA
AAGATATTGGCGTGATATCTGAATCGGGAAAGATTTGATGGGTGATGCCT
GATTTGGGTTATAATCGATATTCTTGCACAGTAAACAAATTTTTGTAAAT
TTTTATGAGGTCAAAATATTTGGGCGCGCTAATTTTCTTCTAATTATTAC
GCTTAGTCATGAAAAGTTAGACTAGGAGCAATATTTTTATATTAAGGATG
GAATCCTTGTCAAAATGAAAGAGTATTGAACATTGAGGAATGGAGCTGCC
AGTACTGCGGGGACGTGTAGAAATACAAGCTCAAGGTTACACAAAAGATT
GGTTAGCAGTTTCGGATAAATCAATAAAGTTCACTTGCACAGTAAATACA
TTTTCCTCTAATTATCTTATAAGAACATAAGGCTTCGATGGCCAAAATGT
TGAGAACGAGTTAAGAACATTTTAAAGCTTTGCGAACTCTAAAACACCCG
ATTTCTTAGGAAAACAGACAACAATGCCCACAAAATGGTTAAAACTAGAA
CATATCAAGAACACTTTTAGGCTATTTCATCGTCCTTAAGAATTATACTA
TTATACATTATTGATAACAGCGCCCGCCATCAAGCATGCTTCAATTGTCA
ATAAAACTGATTCTGAAGCCGGAACTTAAAAATCGCTGGAACAGCCGAGA
ATCGCCGGAAAACGGGTTCTCTTGAATTTCTAGAGTTTTTTTATGAAATT
TTGCACACTGATGCAAAATGGCAATACCTAAAATATGACGGCGCCTGATT
TTTAAAAGAAAAAAAATTCCGGCCAAAAATGCCTGAAATATGCCGGAAAA
ACCGGTTATTGGCATTTTCTCGAGATTTCATCATTAGTATTTTCTGATTT
TTTGCTCAAAGATGCGTAATAGCAATGTCGGATTTTTGAGAACAATTTTT
TCGGCCGAAAATGTCGGAAATATGCTGAAAATCACCGTTTTTGCAGATTT
TCACTGGGCTTTTTTCCTAATATTTCTATATTTTTATTTTCACACAAACG
TTGAACTGGAAGTAAAATCTCCAGCTTAATTTGAAAAGTGAAAAACCTGA
AAACAAAAAAGTGTTAAGAGACTTGTTAACCCTATTATTATCAGGCTTTT
TCGGATTTTGTATTCTCAAGGGGGGGTGTTTTCCACCAGCCTTGCATAAC
TTTTGATCTAGAAAAGATATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTATATTAAAAGTCAAAAACTTTCAGAGTGTTAAAAA
AAAATTTCAGTGAGCTATTAGCAAAATAGTGCCAGCCTGGTGGAAAACAC
CCCCCCTGATAAAAAGGGTTGGTGTAATTTAAGATGCACGATCTAACGAT
TTACGATTCACGATGTGCGATCCATGCATAAAGTATGCTGATTATTCCTA
ATAATTATCATAAAACTTAAATTATATTGTATAATTCTAAAACAGTGGCA
TAATCTTTTCTCGCTTTTGTTTACCACGGTAAATTCAAGTAAATTTATGC
AAAAAAAACGAAATATGTAAGCAATGAAAGTACGAATAATTACGACCGTA
AAATTATGAAAAAACTTACATAATGTTGATAATAAAAACTACCAGACTAC
CTTGTGAACATAAACAATGCACAAGAAATATTTTTGCTCTCAGTTTTAAC
AATCATAATCGAATATAGGAATTTCTTTCTTAAAAGCAAAGAAAAGAATA
TATTGGCGAACAATATGTTTTGCGGACCGTAATGTACGAAGCAAAAAACG
GGTGCTCTATTATGAGAAAGAATTTTCTTTTGGTAAACAATTCCCCTATA
TTGATTCAAGTTTATGAAAAAGAGAGAGAGGAGAGTACAGAAAGTGAATA
CACGTGGCTTTCACTTTCTTTTAATCTATGACTGAATTGAAATTGAAAAG
AGAAAGGGATTATGGCATAATCAGGAAAACGCACTGAAAGCTTCTTTAAA
TATAATTTGTATAATTTTACATGAATGATGTTTTTAAAAATAATTGAGTT
TCAGCGAATGAAAGTTTGTAAATTGCCTAAATATTTTATCATGATTAGCA
TAATTACGCATGAATTAACATATTTTATGCATGGATCGCGAATCGTGCAT
CGTAAATCGTTAGATCGTGCATCTTAAATTACACCAACCCTGATAAAAAT
AGGGTTAAGTCTCAAGAATTACTAATAACTACTATTTGTCGAATTTTGAT
GACCATTTGTTTATTTTTTTTCAGTCCCCGTACGTTTCTTATTTTACTTC
CTTCTCTATTTTCATTCTATATTTATCATTAGGTAGGTCCAATATGCATT
GAGCTTGTCTTCCTTCATTGAATTGTCGTTATCTCATTCGAAATATATTC
TCAGAAAATAGAGCTCTGTTTAAGTGTTTGTTAATTTGATTCTTTTTATA
CGTTTTGTTGATGTTATTTGTGTTGTTCGAGTTTGAAATTTGATTCGTAA
AAATCGTTCATTTTGGTTCATTTTCAGCGATACATCATATTTGATTATGT
GTATTTCAAAACTAACTGCAAGTAAACTATTAAGTTCGACTTATATTACT
TGATTTCATGTACGTAGTAAAGATAATTCCGAGTTTTATTGTTAATTGAA
GGGACCATAACGCTTGTTCGAGTAAAGGAGACATTCGATTTTTAGTGAAT
AAACTTCTTTACACATCTTCATATAGTCATGCTGTGACGTCATTAGTGTC
CAGGTCTTGCTGCGAATTAATACGCTATCACTTCAATTCATGGTGTTCTA
ATTATATAAGTATACTTGCCGGTATCTTAAACATCTGTTAAAATAGGCGA
TTGAAATTTATGTACCTTTTTTATAAGAATCAATAAATTTTGGCTTAGGC
TTATAGCTGATCTTATTTTTTTCGTGATTTTCAGGCGTAAAATTTTCTTA
CTTAAAAAAAGAGACATAAGATCTAGCATTTCTATAATCTGGGAGGCCTG
GAATGTTCATAGCTTGGTCTTACGGTATTGTTCTTATTGAAGAATTTGAT
TGATAGAAGGTCGGTCTTTTACTGGGGTATGGTTTTGAAATTTGCTACGA
CTTTCCGAGTGAGTGTTTTATTTTGTCGATGATGCCAATCAGCGTGTATT
TAAAAACCTACTAGCTTATTGAAACTAATTTTCGCAGGAACTAATATTCA
TGGTCGAAAAAAAATCGGAAAAATTGCATTTCGCGGGTTTTAATTTTCGT
GGTTTTGCCCTTTTTTTGGACAAATTTCTTTCATTTTCCTAGGGATTTTT
CAAATTTTTCGATAAAATTGGAAAAATTGTATTTTGTGGCTTCAGATTTT
GGCGGTTTTACAAAAAAACCGTGAAAAACGCTAAACTTAATTCCCGCGAA
AATTAGTTCTAATAAAGTAATACTTGTTACCACTTCCGAAATCTCTCTTG
AGATATTTAGAGTATAGTATTTGCTTTTTTAAAAGGTTCGGCTTTTTAAA
AGCCAGTTTGACTTCGGTTTAAAGCCATGCTCATATTTTAAAGGATTTTC
TTGACTGGTCAGCACGATCATTTCATTGTAAAGAAAATTTGAAATAATCC
AAATTGTTTGAACGATCAAGCTAATTGCATAACAGACCCCCCAGAGCGAC
TCAAACGAGCCGAAAAACTTTTTGCTGTCTTATTTTAGTTTTTTTTGTTT
AGACTCTGGCCATATTTCTAAACTTTTAGTATTGCTGAAATTTTGTGATG
TTACGGGAAAGTTGATAAGTTTGCGCGATTGGATTTTGAGGAAATCCACT
TAAAAGAGACAAGTTTTATTCTGTTTTTGTAATCAACCCAGATACATAAA
AACGCCTTCGTCATCAGGAGATTGCTATTTGTGTGACAGCTCTTGTGATG
AAATTGCCAGCCATGAGATTTGATGTGAATTTAGTTCGAATGGTTGAATC
AAAGAGACTTCTATTAGTAACTCTTAAAAAGCTAATAAAATTTAAAGATT
CTAAAATTAAATGGAGTTTTGTTGGTATTTTTGGGCTTTTTAAGATGAGT
ATCATGGATCTATTAGATATATTTTGGATTTTTGGAGTAAAGCTGAGTAA
CTTAGTAGTTGAATAAAGCTTAGTTTTTTCTTTTTTATCTATAGAATGAA
CGTGTTCAGCAAATTTGGAGAAACACTCCACTCAGTCGATGCGCATGCGC
TATTGAAATCAATCGGTCTTGAACAAATGATGTCAGATGCGCCAACAGAC
CATAAATATCTAGCCTACCTTAGTGGTGGAATCCTAGCTTCGGCTGCAGT
ATTATTTGTCGGTAACCGTTTGTTTCATGATCGTCTTTCCAGTTGGAACC
TACCAGGACCGAAAAGTTCACTCCTGCCGATAGACCTGTTCAAAGGTCAC
AAAAACCAACACCAACTACACTTATTGTTAGACGACTATGTGAAAACTTA
CGGCGAAACTTTCGCTTTTAATTACAAAGGACAGCCTGTTGTCGCAACGA
CAGACGAGGATATCATACATAAAATATTATGGAAAGAATTCCCAAACTTT
GAAAACAGAAAGGTTTGTTTCTTTACGTGAAAAATTTACCTATTCACAAC
TATTCGACCTCTTTTGAGTAAAGTGCAAATAATTGGATGAAGGCCAAGAA
TGGACCATTCAAATGACATCGAGGGCTTCGTTTATGTAAGGTGGTTGCCC
TGTATTTTTAAATATTTGACCCACTTCCTTGGCTTTTAATGAGAAAAATC
CCTTTCACAATTTCCAGCTTAGTGATCTTTTGGTATTGATACGCAATACG
CCTTTTCTACTAAAGATCCCCTAATTTTCTTTACCACATTTACAAGCTTA
GACCATAGTCATTATAAAAAACACCGGTCTGGCAATGTATTGTTATAGCT
TTTTGTTCAATTTTCTTTTTTTACAAATAAAAGACAAGTTGCGATCTGCA
TACTTTTTGATCACGTTACCAAAGTCTCCTCTTGGGATTGGTCTATTTTC
TAATCACATGATCAAAAAGTTTGCAAAATAAATCGATTTTGGTAAGCTCT
ATCTTTTAACAATAAGAAGAGACAAAAGCCTTCCAGACCAGTATTTTTAT
AATGACTATGCTTAGACGGCCCGACACGTTTTCAATTGGGCCCTTTAATA
TGTATTTTGTTCACCTTACAGTTCTTTGTCGAGATGCCGTGGCCTTGTCA
ACACATGGTAACCATGGCAAAAGGAGCAAAGGCCAAAATGATCAGAAACC
TTTTGAAAGCTGTATTAGACGCCAAAAGTATCAAAAATAATTGGGCTCAT
TTTCAAGAAGCGAACCAGGACGTGGAAGAGCTCTTGAGGGACGCCGCGTT
AAACATGCTAGAAGTTAATTCGACAAGGTAAAGGCTTTTAATGAGATGTT
CATTTCTTGAATACTTTTGGAAGTCTGAGCCCGGGGTCTACCTTAATGGA
AGAAATCTTCGTTGGAATGAACTTTTGCGGAACGAATTTTTGCGGAAATA
AACTTTTGCGGAACGAATTTTCGCGGAATTTAATTTCGCGGTTTTTTTGA
CAAATCCGCGAGATAAAATTTCGCGAAACACGAATATTTTTAGGATTTAA
AGTTTACCTTAAGGTAGTTAGAATGAAGCAAGGCATTTATTTGAAAAAAA
AGGGTATTGAAAAGATGTGTTTCATGTTGGCGACTTCGTCAAATTCTCCT
AATCTACTTCACTGAACCCAAGGGCATCAAAAATCATTAAAAAAGTAGAA
ATTAGCCAGAATTAGACTTGGAAGGGTTCTAGGTTCGTTGATAAACAGCC
TATAAAATCTACCGCACGAAGAATAGATTCAATCTGTCGTAAAAATGCGG
CGCGAAAATTTTTTTTATCTAAAAACANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAAAGACTTAATAGTGGGAAGATTTCGTATATG
ATCTCCGAGGTTATTCCATTCATTTATGCAAAAAGGAAAGAAAGAGGCAC
GATAACGCTCGGTTCTACAAAAAGGTGCCTCGAGTGGTGGTTTTATCCTT
CGCCCTGCATTGCGTTCTTCCTCTCCTCTCTGGGGAGGAAGAATATTCTT
TAAGGCTTTTAAAGGCTTTTAATGAGACGTTCATTTCTTGAATACTTTTA
GAAGTCTTAGCCCGGGGTCTACCTTAAGGGAAGAAATTTTCGCGGGAATG
AACTTTTGCGGAACGAATTTTTGTGGAAATAAACTTTTGCGGAACGAATT
TTCGCGGAATTTAATTTCGCGGTTTTTTGACAAATCTGCGAAATTAAATT
TCGCGAAACACGAATATTTTTAGGATTTAAAGTTTAGCTTAAGGTAGTTG
GTTTGGATTTTTAAAATAGAATGAAGCAAGGCATTTATTTGAAAAAAGGG
TATTGAAAAGATGTGTTTCATGTTGGCGACTTCGTCAAATTCTCCTAATC
TACTTCACTGAACCCAAGGGCATCAAAAATCATTAAAAAAGTAGAAATTA
GCCAGAATTAGACTTTAGTCTGGAAGGGTTCTAGGTTCGTTGATAAACAG
CCTATAAAATCTACCGCACGAAGAATAGTCAATCTGTCGTAAAAATGCGG
CGCGAAAATTAAGTTTTTTGTATCTAAAAACAAGCTTAACTTTTATCGAT
TTATCTATCGATGTCTATAGTCATTTCTAAATATGTTTAGTTTAGCAAAT
GGATATATCATGCAGATCATCACCAAGATGGCATTTTCGCTTGATTGCTC
CAACCAATCAGATCTCAACAAACAATTGGTCCAACTATCACACCTCTTTA
CTAGACCTCCAACATGGCTTCAAAGCTGTTCCAGTCTCCCAATCATTGGA
AACTTGTTGAAACTTTCCCCATGGGGATTTAACTCAAGTTTGCATCAGTT
CATAAAGATTGCAACAGACATTGTTGTGGAAAGACGCAAAGAAAAGAATC
GCGAACCACAGGTAAGCGCCTGAGTAACTAGCATGCTGGCATCCACTAAC
GGATTCTTCTTCCTCATACTAACTGCAGTTTGGTAGAGGTCTGAGATTTA
GATTACTGAGCAACCTCATCCCTAAGCATGGAGTGATTCACCTTCAAGAA
AAACTTTGTCCAAACAAATAACTTTGTGAGAGAATCACTACAGATTATGA
TTTTTCACGAAAAATAGTTTTCTACCGAGTACGAGTAATGACTAATAGTC
TCTATAAAATTGATTACAATTCAGTTGTTTTTATTGATGATGCAACGTTG
GCTCGAAAGTATATGTTTAGACAAACGTGTAGTATACTCTTCGCAATTTC
ATATTTTGCCTGTTTGTCTGTCAAATAATTTTTTTCTATTTGGAAAACTA
CATACTTACAATCTGGCTCTCCCAGTGTCGTTCGAGTGTCATGGTATACG
CCATGGCTTGGCAGCTCGCGTCTGTCTAGTTGCAGTGTCTGTCAGCGCCG
TGATTCCTACTCTTTCGTGGGTAGGACCCATCCCAAATGCATTCGGAGGG
CTATCTATCTATATCTATATATCTATCTATTATACTTACAATCAACCTAC
TTCCAAGACTATTAATATAAATATTTGTCAACAATCAATACTTTTGCTTC
TCTTTCTAGGATGTATTGGACGTTCTGTTAGCAGCACAATCCAAAGACTC
CAACATCAGCACTGAAATTCTATTAGCTCAGGCTATTGTTCTCCTCACTG
TCGTCCACGCTTCAACCGCCACGACGATCTCCATAGCAACCTATTATATC
GCCAAACACAAAGATGTACAAAGGAGACTACAACAAGAGATTGACAGTAT
CTCAATGGAAGATGGATTTCCATCTTGGGAACATCTACATAAACAGTTGC
CATACCTTGGACAAGTTGTCAATGAAACTTTACGCCTCTACCCGTCAGGT
AAATATTCTATGTTTCTTTCATAGACGAGACAATATTAATTTAACTTTTT
TTTGTTTTACGGGACGAGATGGAGTTTTTACTAGCTCCTATTTGATTTGA
AATTAATAAGTTAATAAGTACAAACAATTACTAGACATAGGAAGGCGGAA
TTCAAGGATAAATCAGGGAAGTCAGCGCTTATACTTACGTGTTTGAAATA
CAGGTGACGCTCTCTTATTCGGTTTCAAGGGTTTGGATTTTTATCGAATA
AAGGGAGCTTATTGAATGGGAGAACGTCGTTTATGAAACTTTGTTGTTGG
CAGTGACTTTCAATATAATCAAACAATGGAGCGTATCTACAGAAGAACCT
TAGAATTAGGGGACAAGCTGGAGTTTTTTACAAGCTCTTATTTGATTTGG
TTGGTCGTTAACCAGTAATAAAACAATTCTGTTACTTTTTTCTAAAGAAC
GCGTCATCTCTATCACTTCAAATGACCAATTAGTGAAGTATCTTGTAAAA
ACTCAACTCATCACAGAATTAGAGAGCGTAACGACCTCGTACAAGTTCGA
ATTAGAGATAGCCAACTGTACTTTCTTTTATTCAGCCTTTATGTTGATGC
GTGAATGTACAAAGCCAACAACAGTCAATGGCATCTCCTTTGAAAAAGGT
GACGGAGTTCTCATCCCAACCTATTCGATGCATCGAGATCCTAAAGTTTT
CACTGATCCTGAACAATTCAATCCAGACCGGTTCGAGTAAGTCCATCAAA
GCTCATTTTGAACTTGAAAAACCCAGTGGAATACCAAAGTGTTGTCAGCC
AATATTTCACTGTACCCTAAGCTCCCAAATAAATGTCTCCCCCGCTTATT
AAGTCGAAAAGTTTTTGCCTATCTATCTAAGGTGAAGTCGTCCTTCAGGT
TTTTTTATAAAATATCCCATCATGGACCATCACTTCAGGATTGCTCCCAA
AGGGATAGAGAATGGTGTGATATTTCGGGAAATTTGCGATCGTTATCCTA
ATGCTGCTTGTGGATGTGTGAATATGGAAAGATGGAAAGATGGGTACCCT
CCCTAGGAAGTGACATTCGGAGAAGGGATAAAATTAAAAAGGTTTTTTGA
AATTTAGGTGCAAATACGGAAAATAATTGAAACTTGAAAGGAATATATGA
ATCATAATTTTGTCCTTATATTTTATGCAGTTTTCCTTTTCCCTGTGAGA
AAATTTTCTTGCGCCTATTGTGAAAAATCACATCATCCAGTATCCAACCA
GGATTACTCTGGGTGGGATAATGTTGGTGGGATATTTCTGGACATTTGCG
GTCGTATCCTAAAACAGCTATGTAATTTATAAAATATCAGTGGATGAAAT
TGATAGACCCCTCAAAGTGTTCGAAATTATGTACAGTTCCAGAATTGTTG
AGGTTTCAGAGTTTGTTGAATATAATATGTTTCAAAGTTATATCAATGAG
GATGTTTTGTAAGTGAAGTATTTTGTGGAGTATGTAAAATTGTTTATTTT
GATCAGCTTTTGGAAAAAATCCCAAGGCCAAGAGAGTTAAAGGTGAGAAT
ATGTAGAGTCTGTGTGAAAAATTGAAAATTAAAATAAGAAAAGAACTTTC
TATGCTCTGGAGGTGGAGTATGCACAATATTTGCATATTTATTTGGTAGA
CTTGAGCGCCCCAAGACTGTGCAATTGAATAGAGCTGTGGGAGAAAAATT
CTGGTAGAATGTCTTTGGGGTGATAATAGACTAGAATTGCAGATTTTATG
CAATGAAGACTGCTGTAGCAGAAGATCTTAATGTTAAAATGTGAAATTAA
AATGAACAACAGATGAGATGGAGACACCCCCACCAAGGGGGTGCCTGGAG
ACAGGTGCGGATCCTGGAGTAAGCTCTCCTTGCCACTCTAGAGTCACCCA
CCACTCCAACGCCCCCTTTCCTATTAGAACCACTAGTTTAGCTAACACAA
GCTGAATTGCTTTTAGGCTGCGCGCATCTCCGGTTTTGATTTTGATATAG
TGGATGCTGCGTATCATGTATAAAATTTCCGTCCGAGATTTACCCTAATA
TTTACCCTGTTTCAATTTCATTTAAAAAGTTATAAAAATTAGTGATTGTA
TTAACATCTAATCATTCAAATTTTTAATTGAAATTTGATGAAATTTAAAG
ATCTATCATATTACATATTACTTTATCAAGCTAATCAATTTTCAAAAATT
CAAAAACAGAAAGACGGACGGGAATTTTATACACGATATGCTGCTCCGAG
ATCTAATAATTTCCAAAGGATCAAACTATTTCTATAATAAAGAGGAAAGA
TAAACATTTATCAAATTTGGCCAAATTTGACGTAGATTTAAAAAATCAAA
TGCAAAAACAAAGGTTTTTGTCGTATTAAAAGTTAAGGCCCTTTGGAGAA
CTACCGGTATCTCGACCACGCTACTATAAGTATACTATCGTAGTCGGCAG
AGAACGTGTTCAAGATTCCCCATCTTTTGTAGAGTAAAAACTATTTTTAC
ACTTAGTTGTAAATGTAGTTTCAAAATAATTAACTATTTTAGGACCAAAC
CATCAAGACATTATTATCCGTTCGGTGACGGCTACCGTATGTGTCCGGGA
AAAGAAATGGCTTTGTCCGAAATTAAAACCTACTTAGCTTCGATGTTGAA
AAACTTTGATTTGTCACTTGTTGACGAGAACCAAGAATTATGCGTCAAAT
CATACATTTCAGCTCAAACCACAATGGCGGTGGATGAACCAATCCAAATT
CGTGTACAAAAAAGACGTCATTAGATGTAATTTATAATGTAACCAAGGAT
GTCCTATATCTACCATCGGTTAAATTTTGCAGATTTTTCGAATCCATGGA
AACAATTGATGATCTGTTTTCTGGATGTTATATCTCTGATCAACCTCTAC
ACCAATACTTCATGACAAAGAGTACGAGTTTACTTGTGTCTAATGACGGA
TGTTTGAAGTCATTGATGTGTTTTAATAGATACACTCTCTTGGACCCCCC
TCCCCCTGACCCACTGGAAAGTTTTTCCAAATTTTCGTCCCCGGTAGAAA
AAAATACCCTAAAATTTCAGGCCTATTTGCTTTTTTGACCGCTAAAAACA
AAAGAATTTTATTCCCCATTGGCGGGAGTTCGATAGAGATTTTATCCCCA
CTGTGGGAAGAATTTCTAACGGGGCTTAGTGACAGAGGTGTAGATACAGA
TATTTGACTCCGATAAGTCCGAACACAACCTTCTTGTGAATTTCGGGTTA
ACTGGTATATTCGGTTAATGAAAGACTGTATTATAGTATGGCGCGCCAAA
AGGCTATTTAATACTAACTTTTTTTATAATACCAACTTTTTTTTATAATA
TCAACTTTTTTTATAATATCAACTTTTTTTTTTATAATACCAACTTTTTT
TTTTATAAAACCAACTTTTTTTTTATAGTACCAACTTTTTTTTTAGTTCA
AAGTTTTTTCATAACACCAATTTTTGTCTCGCTTACTATGCGTGTATAAT
CGATCAAGTGTATTAAAATGAAAGTTGGTATTATAAAAAAAAAGTTGATA
TTATAAAAAAAGTTGGTATTATAAAAAAAAGCTGGTATTATAAAAAAAAG
TTAGTATTAAAAAGCCTTTTTGGCGCGCCATATTATAGCCTCACATTCGT
AACAAAAGTTGTGCAGGTATCATAACATATCCACATTAAAACGGAGTATG
GGAGGTGTTGAAGAACCAAGAACTTTTGTATATGGTTCATTGCAGAAGAA
AAAGTTGGTAATATTTTGTTTGGTTAAATTCAAGAAGGAATAAATTTATT
TTAAAAAGACAATTATTTCTTCATTATGTTAATTGTAAATAATCATGCAT
ATATATAATCTTTAATATGGTGCTTATTAAAAAAACACATGAATCTTAAA
ATAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005784XLOC_005784Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010302-exon-sc0000104-1575043694:187789..187829TCONS_00010302-exon-sc0000104-1575043694:187789..187829Clytia hemisphaericaexon
TCONS_00010302-exon-sc0000104-1575043694:182618..183035TCONS_00010302-exon-sc0000104-1575043694:182618..183035Clytia hemisphaericaexon
TCONS_00010302-exon-sc0000104-1575043694:181803..182008TCONS_00010302-exon-sc0000104-1575043694:181803..182008Clytia hemisphaericaexon
TCONS_00010302-exon-sc0000104-1575043694:180219..180489TCONS_00010302-exon-sc0000104-1575043694:180219..180489Clytia hemisphaericaexon
TCONS_00010302-exon-sc0000104-1575043694:179282..179570TCONS_00010302-exon-sc0000104-1575043694:179282..179570Clytia hemisphaericaexon
TCONS_00010302-exon-sc0000104-1575043694:178544..178694TCONS_00010302-exon-sc0000104-1575043694:178544..178694Clytia hemisphaericaexon
TCONS_00010302-exon-sc0000104-1575043694:175374..176737TCONS_00010302-exon-sc0000104-1575043694:175374..176737Clytia hemisphaericaexon
TCONS_00010302-exon-sc0000104-1510915933:187789..187829TCONS_00010302-exon-sc0000104-1510915933:187789..187829Clytia hemisphaericaexon
TCONS_00010302-exon-sc0000104-1510915933:182618..183035TCONS_00010302-exon-sc0000104-1510915933:182618..183035Clytia hemisphaericaexon
TCONS_00010302-exon-sc0000104-1510915933:181803..182008TCONS_00010302-exon-sc0000104-1510915933:181803..182008Clytia hemisphaericaexon
TCONS_00010302-exon-sc0000104-1510915933:180219..180489TCONS_00010302-exon-sc0000104-1510915933:180219..180489Clytia hemisphaericaexon
TCONS_00010302-exon-sc0000104-1510915933:179282..179570TCONS_00010302-exon-sc0000104-1510915933:179282..179570Clytia hemisphaericaexon
TCONS_00010302-exon-sc0000104-1510915933:178544..178694TCONS_00010302-exon-sc0000104-1510915933:178544..178694Clytia hemisphaericaexon
TCONS_00010302-exon-sc0000104-1510915933:175374..176737TCONS_00010302-exon-sc0000104-1510915933:175374..176737Clytia hemisphaericaexon
TCONS_00010302-exon-sc0000104-1491911889:187789..187829TCONS_00010302-exon-sc0000104-1491911889:187789..187829Clytia hemisphaericaexon
TCONS_00010302-exon-sc0000104-1491911889:182618..183035TCONS_00010302-exon-sc0000104-1491911889:182618..183035Clytia hemisphaericaexon
TCONS_00010302-exon-sc0000104-1491911889:181803..182008TCONS_00010302-exon-sc0000104-1491911889:181803..182008Clytia hemisphaericaexon
TCONS_00010302-exon-sc0000104-1491911889:180219..180489TCONS_00010302-exon-sc0000104-1491911889:180219..180489Clytia hemisphaericaexon
TCONS_00010302-exon-sc0000104-1491911889:179282..179570TCONS_00010302-exon-sc0000104-1491911889:179282..179570Clytia hemisphaericaexon
TCONS_00010302-exon-sc0000104-1491911889:178544..178694TCONS_00010302-exon-sc0000104-1491911889:178544..178694Clytia hemisphaericaexon
TCONS_00010302-exon-sc0000104-1491911889:175374..176737TCONS_00010302-exon-sc0000104-1491911889:175374..176737Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:175374..187829 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.78116e-07	4.47067e-05	8.67141e-10	0	2.84987e-06	0	0.00068216	0.00039023	0.000236235	0	0	0.00418493	3.21635e-09	0	0.000510685	0.168268	1.45208e-06	0.000907606	0.0318882	3.66637e-05	0.0182669	0.351509	0.000286602	0.00813578	0.000902852	1.98956e-09	0.0434059	0.0130075	0.000659336	8.40635e-05
Blast
[Close]
BLAST of TCONS_00010302 vs. Swiss-Prot (Human)
Match: CP3A4 (Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1 SV=4)

HSP 1 Score: 168.318 bits (425), Expect = 4.988e-44
Identity = 137/477 (28.72%), Postives = 239/477 (50.10%), Query Frame = 1 
Query:  223 HDRLSSWNLPGPKSSLLPIDLFKGHKNQHQLHLLLD-DYVKTYGETFAFNYKGQPVVATTDEDIIHKILWKE-FPNFENRKFFVEMPWPCQHMVTMAKGAKAKMIRNLLKAVLDAKSIKNNWAHFQEANQDVEELLRDAALNMLEVNSTSLANGYIMQIITKMAFSLDCSNQSDLNKQLVQLSHLFTR----PPTWLQSCSSLPIIGNLLK-LSPWGFNSSLHQFIKIATDIVVERRKEKNREPQ-DVLDVLLAAQ-SKDSN----ISTEILLAQAIVLLTVVHXXXXXXXXXXXXXXXKHKDVQRRLQQEIDSISMEDGFPSWEHLHKQLPYLGQVVNETLRLYPSAFMLMRECTKPTTVNGISFEKGDGVLIPTYSMHRDPKVFTDPEQFNPDRFETKPSRH-----YYPFGDGYRMCPGKEMALSEIKTYLASMLKNFDLSLVDENQELCVKSYISAQTTMAVDEPIQIRVQKR 1599
            H       +PGP     P+       + H+   + D +  K YG+ + F    QPV+A TD D+I  +L KE +  F NR+ F  + +  +  +++A+  + K +R+LL     +  +K       +    +   LR  A     V    +   Y M +IT  +F ++  + ++     V+ +    R     P +L S +  P +  +L+ L+   F   +  F++ +   + E R E  ++ + D L +++ +Q SK++     +S   L+AQ+I+ +   + +T++ +S   Y +A H DVQ++LQ+EID++      P+++ +  Q+ YL  VVNETLRL+P A  L R C K   +NG+   KG  V+IP+Y++HRDPK +T+PE+F P+RF  K   +     Y PFG G R C G   AL  +K  L  +L+NF      E Q   +   +S    +  ++P+ ++V+ R
Sbjct:   30 HGLFKKLGIPGPT----PLPFLGNILSYHKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVGF-MKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFGVNIDSLNNPQDPFVENTKKLLRFDFLDPFFL-SITVFPFLIPILEVLNICVFPREVTNFLRKSVKRMKESRLEDTQKHRVDFLQLMIDSQNSKETESHKALSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTYDTVL-QMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKETQ---IPLKLSLGGLLQPEKPVVLKVESR 496
The following BLAST results are available for this feature:
BLAST of TCONS_00010302 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CP3A44.988e-4428.72Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1... [more]
back to top